BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471848
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16500.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1426 0.0
AT1G79160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 150 2e-35
> AT1G16500.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G79160.1);
Has 136 Blast hits to 134 proteins in 17 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses
- 1; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5639032-5640173
FORWARD LENGTH=1005
Length=1005
Score = 1426 bits (772), Expect = 0.0
Identities = 909/974 (93%), Gaps = 14/974 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctctctctGC-TTCTTGGGTATGGCTGCTGACGTCAGCTCTCTCGTACG 59
||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 18 TCTCTCTCTCTTTCTCTCTGCTTTCTT-GGTATGGCTGCTGACGTCAGCTCTCTCGTACG 76
Query 60 GATACTTG-GTAGGTACAAGGATGATCGGACGGTGGTAAAAGATTCCACCGGACCAAGAT 118
||||| || |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 77 GATAC-TGAGTAGGTTCAAGGATGATCGGACGGTTGTAAAAGATTCCACCGGACCAAGAT 135
Query 119 CGACGGTGACACTCATGACACGCGATCTCCTCGGAAGCGGCGGTTGTGTGggaggaggag 178
| |||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 136 CCACGGTGGCGCTCATGACACGCGATCTCCTCGGAATCGGCGGTTGTGTGGGTGGAGGAG 195
Query 179 gaggagaaggagACGAACAGTCGCTGGAACTTGACCTTGACCTCCAAGTCCCTAACGGAT 238
|| | | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 196 GA-G-G-AGGAGACGAACAGTCGCTGGAGCTTGACCTTGACGTCCAAGTCCCTAACGGAT 252
Query 239 GGGAAAAACGTCTCGACCTAAAGTCAGGGAAAGTGTATCTGCAACAACAACGCAATTCAA 298
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 253 GGGAAAAACGTCTCGACTTAAAGTCAGGGAAAGTGTATCTGCAACAACAATGCAATTCAA 312
Query 299 CGAGCTCTTCGTCATCGTCTCATAATCATCATAATCATCACGCAGACCAAACCAACCAAG 358
||||||| || |||||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 313 CGAGCTCGTCATCATCGTCTCATCATCATCATCATCATCACGAAGACCAAACCAACCAAA 372
Query 359 CAGTTCCGAGATTTCAAGATTTGAATGTCCCGCCGATCTCCGACAAATCTCCGGCGAAAC 418
||||||| |||||||||||||||||||| || ||||| ||||| || | |||||||||||
Sbjct 373 CAGTTCCAAGATTTCAAGATTTGAATGTGCCACCGATTTCCGATAAGTTTCCGGCGAAAC 432
Query 419 CATTGCTAAACCTCTTCGACGACGACGACGACACAAGCCTTGAACTGAAGCTActtccgt 478
||||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 433 CATTGTTAAGCCTCTTCGACGATGACGACGACACAAGCCTTGAACTGAAGCTAGTTCCGT 492
Query 479 cttctctctctcgtcctcttccacctcctctgtcttcttattctccAAATACA-TCGCTC 537
||||| |||||||||||||||| |||||||||||||||| |||||||||| || || |||
Sbjct 493 CTTCTATCTCTCGTCCTCTTCCTCCTCCTCTGTCTTCTTTTTCTCCAAAT-CAGTCTCTC 551
Query 538 TCATATCTATCGAGTGTTTGCACACTAGACAAAGTGAAATCGGCTTTGGAGAGGGCGGAG 597
|| |||||||||||||||||||||||||| || ||||||| ||||||||| |||||||||
Sbjct 552 TCGTATCTATCGAGTGTTTGCACACTAGATAAGGTGAAATTGGCTTTGGAAAGGGCGGAG 611
Query 598 AAAGACACAAAGAAACGCCCATCGCCTGACGATGACGGTGTTTACGATGGAACCGCTTCT 657
||||| ||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||
Sbjct 612 AAAGATACAAAGAAACGCCAATCTCCTGAAGATGACGGCGTTTACGATGGAACCGCTTCT 671
Query 658 GCCACCACCGCCGCGGCGTCTCAAGTGGCGGCTGGATGTCCAGGGTGCTTATCGTACGTG 717
| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 672 G---CCACCGTCGCGGCGTCTCAGGTGGCGGCTGGATGTCCAGGGTGCTTATCGTACGTG 728
Query 718 TTTGTGGCGAAGAACAATCCGAAATGCCCGAGGTGTCATTCGTTTGTTCCTTTGCCTGCC 777
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TTTGTGGCAAAGAACAATCCGAAATGCCCGAGGTGTCATTCGTTTGTTCCTTTGCCTGCC 788
Query 778 ATGAAGAAGCCTAAGATTGATCTCAACATTTCGATTTGaaaaaaaCTCTGGGGGATAGAA 837
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 789 ATGAAGAAGCCTAAGATTGATCTTAACATTTCGATGTGAAAAAAACTTTGGGGGATAGAA 848
Query 838 TTGAATGGCTTTATTTTGTAGGTTCGATTTCTGTAAATGATAGATAAAATCAGGGGGTTT 897
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TTGAATGGTTTTATTTTGTAGGTTCGATTTCTGTAAATGATAGATAAAATCAGGGGGTTT 908
Query 898 CATTGAAAAGAAATTGAATGCAGAAAGGAAGAGATGGATGTTATTTTGTAAATTGTTATG 957
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CATTGAAAAGAAATTAAATGCAGAAAGGAAGAGATGGATGTTATTTTGTAAATTGTTATG 968
Query 958 TA-TGGGATTTTCT 970
|| ||| |||||||
Sbjct 969 TAATGG-ATTTTCT 981
> AT1G79160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G16500.1);
Has 104 Blast hits to 102 proteins in 13 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29779721-29780773
REVERSE LENGTH=966
Length=966
Score = 150 bits (81), Expect = 2e-35
Identities = 241/314 (77%), Gaps = 28/314 (9%)
Strand=Plus/Plus
Query 2 ctctctctctctctctctGCTTCTTGGGTATGGCTGCTGACGTCAGCTCTCTCGTACGGA 61
|||||||| |||||| || ||||| | |||||||||||||||||||||||||||||||
Sbjct 90 CTCTCTCTATCTCTCGATGATTCTT-GATATGGCTGCTGACGTCAGCTCTCTCGTACGGT 148
Query 62 TACTTGGTAGGT-ACAAGGATGATCG-GACGGTGGTAAAAGATTCCACCGGA-CCAAGAT 118
|||| | ||| |||| |||||||| | ||||||| |||||||| ||||| |||| ||
Sbjct 149 TACTAAGC-GGTTACAAAGATGATCGAG-CGGTGGTTAAAGATTCTGCCGGAGCCAA-AT 205
Query 119 CGACGGTGACACTCATGACACGCGATCTCCTCGGAAGCGGCGGTTGTGTGggaggaggag 178
| ||| | | || ||||| || || || || |||| |||| || |||||
Sbjct 206 CCTCGGCGGCGCTGATGACTCGTGACCTTCTTGGAAACGGC-----------AG-AGGAG 253
Query 179 gaggagaaggagACGAACAGTCGCTGGAACTTGACCTTGACCTCCAAGTCCCTAACGGAT 238
|||||| | ||| | ||| | || |||||||| ||||| |||||||| | ||| |
Sbjct 254 GAGGAG--G----CGATCGGTCTTTAGAGCTTGACCTCGACCTTCAAGTCCCCACCGGTT 307
Query 239 GGGAAAAACGTCTCGACCTAAAGTCAGGGAAAGTGTATCTGCAACAACAACGCAATTCAA 298
|||||||| |||||| | |||||||||||||||||| |||||| | |||||||||
Sbjct 308 ATGAAAAACGCCTCGACTTGAAGTCAGGGAAAGTGTATTTGCAACGAT---GCAATTCAA 364
Query 299 CGAGCTCTTCGTCA 312
||||||| ||||||
Sbjct 365 CGAGCTCGTCGTCA 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5