BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471849
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16510.1 | Symbols: | SAUR-like auxin-responsive protein fa... 850 0.0
> AT1G16510.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:5644572-5645443 REVERSE LENGTH=872
Length=872
Score = 850 bits (460), Expect = 0.0
Identities = 583/640 (91%), Gaps = 17/640 (3%)
Strand=Plus/Plus
Query 1 TGTACTCTCTCCTCAATGCTCTCGTCATAGTCTTTCCATGtcttctctctatatatagta 60
||||||||||||||||||||||||||||| |||||||||||||||| ||| | |||| ||
Sbjct 84 TGTACTCTCTCCTCAATGCTCTCGTCATAATCTTTCCATGTCTTCT-TCTCTCTATA-TA 141
Query 61 tattacttaactctttctcactctctctctctAATTTTGAAATATATCTCTCATTAGTTT 120
|||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||||
Sbjct 142 TATTACTTAACTCTTTCTCA----CTCTCTCTAATTTT-AAATTTATCTATCATTAGTTT 196
Query 121 AAACCGCCGGAGACaaaaaaaaaaaTGAAGCATCTCATCCGTCGCCTCTCTAGAGTCGCC 180
|||||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 197 AAACCGCCGGAG----AACAAAAAATGAAGCATCTCATCCGCCGCCTCTCTAGAGTCGCC 252
Query 181 GACTCATCCTCCGAATTCTCCATCCGCCGTTCCACCTCATCCTTCCGCAACCGTCGCGGT 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 253 GACTCATCCTCCGAATTCTCCATCCGCCGTTCCACCTCCTCCTTCCGCAACCGTCGCGGT 312
Query 241 CATCACCGTCTCCACGCGCCGCCGCCTCAGTGGTCAATTTATCCGGCGAGAAGAGTCAAC 300
|| || |||||||||||||||||||||| ||||||||| | ||| || ||||||||||||
Sbjct 313 CACCATCGTCTCCACGCGCCGCCGCCTCCGTGGTCAATATGTCCAGCTAGAAGAGTCAAC 372
Query 301 ACCGTCCCCGCCGGTCACGTGCCTGTATACGTCGGCGAAGAGATGGAGAAGTTCGTGGTT 360
||||||||||| |||||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct 373 ACCGTCCCCGCTGGTCACGTACCTGTCTACGTCGGCGAGGAGATGGAGAGGTTCGTGGTT 432
Query 361 AGCGCGGAGCTTATGAACCATCCGATCTTCGTCGGTTTGCTTAACCGATCCGCTCAAGAA 420
||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 433 AGCGCAGAGCTTATGAACCACCCGATCTTCGTTGGTTTGCTAAACCGATCCGCTCAAGAA 492
Query 421 TACGGTTACGCTCAGAAAGGAGTTCTTCATATCCCCTGCCACGTCCTCGTGTTCGAGCGC 480
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 493 TACGGTTACGCTCAGAAAGGAGTTCTTCATATCCCTTGCCACGTCATCGTGTTTGAGCGC 552
Query 481 GTGGTGGAAACGCTCCGGCTGGGAGCATTCGAAGAGTCCGGTGAGGTACAGGAT-TTCGT 539
|||||||||||||||||| |||||| || |||| ||||||||| || || || || ||
Sbjct 553 GTGGTGGAAACGCTCCGGTTGGGAGGGTTTGAAGGGTCCGGTGATCTAGAGAATCTT-GT 611
Query 540 GGCTTCGTTGCTCTCCGGTGATGAATTGATACCTGAAACTACAGAGTAGCTTTTCAAGAA 599
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 612 GGCTTCGTTGCTCTCCGGTGATGAGTTGATACCTGAAACTACAGAGTAGCTTTTGAAGAA 671
Query 600 TAATAATCCAAATCGGCGATTTGATATTTTCTCCGATTTT 639
||| |||||||||||||||||||||||||| | ||||
Sbjct 672 GAAT---CCAAATCGGCGATTTGATATTTTCTCTG-TTTT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5