BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471850
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16520.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1808 0.0
> AT1G16520.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G56080.1);
Has 243 Blast hits to 234 proteins in 69 species: Archae
- 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | chr1:5648760-5651167
FORWARD LENGTH=1291
Length=1291
Score = 1808 bits (979), Expect = 0.0
Identities = 1129/1198 (94%), Gaps = 24/1198 (2%)
Strand=Plus/Plus
Query 1 AATCGGACAATTCCAGAGCT-AAAAACCCTAATCTTCTCGGGCTTGTCATCTCCAAAATT 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCGGACAATTCCAGAGCTAAAAAACCCTAATCTTCTCGGGCTTGTCATCTCCAAAATT 60
Query 60 TGGGGCTCAATTTC-TCACCATAGAAGATAGAACGTTATCTCCGGCGTCGAAGGAGATTT 118
||| |||||||| ||||||||||||||| | |||||||||||||||| |||| || ||
Sbjct 61 CAGGGTTCAATTTCTTCACCATAGAAGATATAGCGTTATCTCCGGCGTCTAAGGGGACTT 120
Query 119 TAGGGGCATTCTTGTGGTGGAGAAATGGGAGACGACCAGCTAGATTTCGAACTACCC-GA 177
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 121 TAGGGACATTCTTGTGGTGGAGAAATGGGAGACGACCAGCTAGATTTCGAGCT-CCCAGA 179
Query 178 GGAGGTTTTGTCGGTGATTCCGATGGACCCTTTTGAGCAGCTGGATCTCGCGAGGAAGAT 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAGGTTTTGTCGGTGATTCCGATGGACCCTTTTGAGCAGCTGGATCTCGCGAGGAAGAT 239
Query 238 TACATCGATGGCGATAGCTTCAAGGGTGTCGAATCTGGACTCTGAGGTGGTGGAATTGAG 297
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TACATCAATGGCGATAGCTTCAAGGGTGTCGAATCTGGACTCTGAGGTGGTTGAATTGAG 299
Query 298 ACAGAAGCTTCTGGAG-AAGGAAAGTGTTGTCCGTGAGCTTGAGGAGAAATCGTCTCGCC 356
|||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 ACAGAAGCTTCTGG-GTAAGGAAAGTGTTGTCCGTGAGCTTGAGGAGAAAGCGTCTCGCC 358
Query 357 TGGAGAGAGACTGCCGCGAGGCTGATTCGAGATTGAAGGTCGTCCTCGAGGATAATATGA 416
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 359 TGGAGAGAGACTGCCGCGAGGCTGATTCGAGATTGAAGGTCGTTCTCGAAGATAATATGA 418
Query 417 ACCTGACAAAGGAGAAGGATTCACTGGCAACGACTGTAACGAAACTCACCCGTGATTTGG 476
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 ACCTGACAAAGGAGAAGGATTCACTGGCAATGACTGTAACGAAACTCACCCGTGATTTGG 478
Query 477 CTAAGTTGGAGACGTTCAAGCGGCAGTTAATCAAATCCCTGAGCGATGAGAGTGGTCCGC 536
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTAAGCTGGAGACATTCAAGCGGCAGTTAATCAAATCCCTGAGCGATGAGAGTGGTCCGC 538
Query 537 AAACAGAACCTGTTGATATTAGGACATGCGACCAGTCAGT-TCCCAAAGACCATGCA--G 593
||||||||||||||||||||||||||||||||||| ||| || | | ||| ||| |
Sbjct 539 AAACAGAACCTGTTGATATTAGGACATGCGACCAGCCAGGATC--ATAT-CCAGGCAAAG 595
Query 594 ATGAAAGGACCAATGCACACTCAAT-AAACCATGCTTACAGTGGATCTACAGAC-CTGAA 651
||| ||||| ||||||||||||||| |||| | ||||||||||||||||||||| | |||
Sbjct 596 ATGGAAGGATCAATGCACACTCAATTAAACAA-GCTTACAGTGGATCTACAGACAC-GAA 653
Query 652 CAATCCAATTGTTGAAGCTTCAAAATACACTGGAAACAAATTTTCAATGACACCATACAT 711
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 654 CAATCCAGTTGTTGAAGCTTCAAAATACACTGGAAACAAATTTTCAATGACATCATACAT 713
Query 712 CTCTCCACGTCTTACCCCAACCGCAACACCAAAGATCATCTCCACAAGTGTATCTCCTCG 771
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 714 ATCTCCACGTCTTACCCCAACCGCAACACCAAAGATCATCTCCACAAGTGTGTCTCCTCG 773
Query 772 AGGATATTCTGCAGCAGGTTCTCCTAAAAGAACATCAGGTGCAGTTTCTCCCAAAAAGGC 831
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 774 AGGCTATTCTGCAGCAGGTTCTCCTAAAAGAACATCAGGTGCAGTTTCTCCCACAAAGGC 833
Query 832 AACACTCTGGTACCCGTTAAGTCAGCAATCATCGGCTGCAAATTCCCCTCCTCGCAACCG 891
||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 834 AACACTCTGGTACCCGTCAAGTCAGCAATCATCGGCTGCGAATTCTCCTCCTCGCAACCG 893
Query 892 CACACTCCCAGCTCGTACACCTCGGATGGATGGTAAAGAATTTTTCCGGCAAGCCAGGAG 951
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 894 CACACTCCCAGCTCGTACACCGCGGATGGATGGTAAAGAATTCTTCCGGCAAGCCAGGAG 953
Query 952 CCGATTATCCTATGAACAATTCAGTTCCTTCCTAGCTAACATCAAGGAGCTCAACGCCCA 1011
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 954 CCGATTATCCTATGAACAATTCAGTTCCTTCTTAGCTAACATCAAAGAGCTCAACGCCCA 1013
Query 1012 GAAGCAAACCCGAGAGGAAACTCTGAGGAAAGCAGATGAGATATTTGGGGAAGATAACAA 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 GAAGCAAACCCGAGAGGAAACTCTGAGGAAAGCAGATGAGATATTTGGGGAAGAGAACAA 1073
Query 1072 AGATCTTTATTTATCTTTCCAAGGTCTCCTTAACAGAAACATGCGTTGAACTTTTTCATA 1131
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1074 AGATCTTTATTTATCTTTCCAAGGTCTCCTTAACAGAAACATGCGTTAAACTTT--CATA 1131
Query 1132 AGCCGTTATCTTTAATCCTGG-CCAACGTGATAGGATC--T-T-AACCATTGTAGTAT 1184
|||||||||||| |||| ||| |||| |||||||||| | | ||||||||||||||
Sbjct 1132 AGCCGTTATCTTGAATC-TGGGCCAATGTGATAGGATGGATATTAACCATTGTAGTAT 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59638247460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5