BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471855
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16560.1 | Symbols: | Per1-like family protein | chr1:56684... 2050 0.0
> AT1G16560.1 | Symbols: | Per1-like family protein | chr1:5668413-5670708
FORWARD LENGTH=1446
Length=1446
Score = 2050 bits (1110), Expect = 0.0
Identities = 1310/1405 (93%), Gaps = 20/1405 (1%)
Strand=Plus/Plus
Query 235 AGATGGCATTCCACTACTGGACAGCCCTGTTTCTATTGTTGTCATGCCTTTTCAGTATTT 294
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 51 AGATGGCAGTCCACTACTGGACAGCCCTGTTTCTATTGTTGCCATGCCTTTTCTGTATTT 110
Query 295 CAAATTCTAGTGCTGGCGATGCCGATCCAGATTACAGGACATGTGTTTCAGAATGTGAGA 354
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 111 CAAATGCTAGTGCTGGCGATGCTGATCCAGATTACAGGACATGTGTTTCAGAATGTGAGA 170
Query 355 TAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCGGATGGTGGTC 414
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 171 TAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCCGATGGTGGTC 230
Query 415 CATGGTACATACAAGAACCTCTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATT 474
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 231 CATGGTACATCCAAGAACCTTTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATT 290
Query 475 GCCGTTATCAATGTATGGTTAATAGAGAGAGGGAACGGGAAACTCTCGGCCAAGCCCCTG 534
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 291 GCCGTTATCAATGTATGGTTAATAGAGAGACTGAACGGGAAACTCTCGGTCAAGCCCCAG 350
Query 535 TCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTG 410
Query 595 TTGCGTTCTCTGTGCTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCA 654
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTGCTTTCTCTGTACTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCA 470
Query 655 CGCTCTACTATAAATTGCCTCTGAAACAAGATAAGTCAGCGTACTATGAATACGTCGGTT 714
| |||||||||| ||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 471 TGATCTACTATAAGTTGCCTCTGAAACAAGATAGGACAGCGTACTATGAATACGTTGGTT 530
Query 715 TGTGGCATATCTACGGTCTTCTGTCCATGAACTCTTGGTTCTGGAGTGCTGTTTTCCACA 774
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TGTGGCATATCTACGGTCTCCTGTCCATGAACTCTTGGTTCTGGAGTGCTGTTTTCCACA 590
Query 775 GCCGGGATGTTGACCTCACAGAGAGGTTGGACTACTCATCCGCAGTAGCCG-TTCTCGGA 833
|||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 591 GCCGGGATGTTGACCTTACAGAGAGGTTGGACTACTCATCCGCAGTAG-CGATTCTCGGA 649
Query 834 TTCTCACTCATCTTAGCCATTTTACGAACCTTTGATATTCGGGTCGAGGCTACAAGGGTT 893
||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 650 TTCTCACTCATCTTAGCCATTTTACGAACATTTGATATTCGGGTTGAGGCTGCAAGGGTC 709
Query 894 ATGGTATCCGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTAC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATGGTATCCGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTAC 769
Query 954 AAACTCGACTATGGTTGGAACATGATTGTGTGTGTGACAATGGGAGTCACTCAGCTTTTT 1013
|||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 770 AAACTCGACTATGGCTGGAACATGATTGTGTGTGTGGCAATGGGAGTCTCACAGCTTTTC 829
Query 1014 CTATGGGCAAGATGGGCTGCTGTCTCGAGCCATCCTTCTAACTGGAAACTTTGGGTGGTT 1073
||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 830 CTATGGGCAAGATGGGCCGCTGTCTCAAGCCACCCTTCTAATTGGAAACTTTGGGTGGTT 889
Query 1074 GTGATAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGC 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GTGATAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGC 949
Query 1134 TACTTCGATGCTCACTCGATTTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGG 1193
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 950 TACTTCGATGCTCACTCGATCTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGG 1009
Query 1194 AGCTTCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGCTTCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACG 1069
Query 1254 AAGGCAAAGTGAGT-TCTTCGCTAAATTTCAGAAGGATTTATATTCGACCGTACAAATTT 1312
|||||||||||||| |||| ||||| ||| | |||||||| ||| ||||| ||| | | |
Sbjct 1070 AAGGCAAAGTGAGTCTCTTTGCTAAGTTTTACAAGGATTTTTATCCGACCATACGAGTAT 1129
Query 1313 GCA-AGCAC-AGGAGAAAAACAAAAGGTGGAAATGGATTCAAGCATCACGAAGAAGGAAG 1370
||| | ||| ||| |||||||||||| |||||||||||| || |||||||||||||| ||
Sbjct 1130 GCAGA-CACGAGG-GAAAAACAAAAGATGGAAATGGATTTAAACATCACGAAGAAGGCAG 1187
Query 1371 AGTCTTTTGTTCAAAGCTAGCTGGTTTC-G-ATTCTCAGGTTTCTCCAGTTTAtttt-tt 1427
||||||||||| ||||||||||||||| | |||| ||||||||| |||||| |||| ||
Sbjct 1188 AGTCTTTTGTTTAAAGCTAGCTGGTTTATGGATTCACAGGTTTCTTCAGTTTTTTTTATT 1247
Query 1428 tGT-TATTGTTTAAGCATTAACTGTGGAATTTGCTTTCAGCCTTTCACAAAATTTTCTT- 1485
| | ||||||| | |||||||||| ||||||||||| ||||||||| |||||||
Sbjct 1248 T-TATATTGTT-A--CATTAACTGTTGAATTTGCTTTGAGCCTTTCAGTGT-TTTTCTTT 1302
Query 1486 GGCCTTACTTTTGGTTAATTGAGATTTTGATATCATTCACTCGTTCATACAAAGACTCCT 1545
|||||||||||||||||| |||||||||||||||| |||| |||||||| |||||| |
Sbjct 1303 GGCCTTACTTTTGGTTAAGAAAGATTTTGATATCATTTACTCATTCATACACAGACTCAT 1362
Query 1546 GCCAAATCATTTCGGAAT-CAGATTTTGTCAATATTT-CGAGACAATCTTGTAATCTATA 1603
|| ||| ||||| | ||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1363 GCGAAACCATTTTG-AATTCAGATTCTGTCAATATTTTCGAGACAATCTTGTAATCTATA 1421
Query 1604 TGATTGTGTACAAAAATTTGGATCT 1628
|||| |||| ||||||||||||||
Sbjct 1422 GGATTTTGTATAAAAATTTGGATCT 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5