BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471861
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:56... 1491 0.0
> AT1G16610.3 | Symbols: SR45 | arginine/serine-rich 45 | chr1:5675848-5678852
REVERSE LENGTH=1521
Length=1521
Score = 1491 bits (807), Expect = 0.0
Identities = 1051/1160 (91%), Gaps = 51/1160 (4%)
Strand=Plus/Plus
Query 1 GTCCGTCGCTCTCCTCTAATCTTTTTTATCCGCTAGGGTTTTGAAGCAAGGTTTCTCGCG 60
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GTCTGTCTCTCTCCTCTAATCTTTTTTATCCGCTAGGGTTTTGAAGCAAGGTTTCTCGCG 144
Query 61 ATTTTCTCG--A-GTATCGCCCATGGCGAAACCAAGTCGTGGCCGTCGTTCCCCTTCCGT 117
||||||||| | | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 145 ATTTTCTCGATATCTCTCGCCCATGGCGAAACCAAGTCGTGGCCGTCGTTCCCCCTCCGT 204
Query 118 GTCTGGCTCATCATCTCGTTCCAGTTCCAGATCTCGTTCCCGCTCCGGTTCTAGTCCCTC 177
||||||||| |||||||||||||||||||||||||||| || ||||| || |||||
Sbjct 205 GTCTGGCTCGTCATCTCGTTCCAGTTCCAGATCTCGTT--CG----GGTTCGAGCCCCTC 258
Query 178 CAGGTCTCTTTCCCGCTCCCGCTCCCGGTCCCGTTCTAGATCGCTCTCTTCATCCTCATC 237
||||||| |||||||||| || | |||||||||||||||||||||||||| |||||
Sbjct 259 CAGGTCTATTTCCCGCTCACG----C--TCCCGTTCTAGATCGCTCTCTTCATCTTCATC 312
Query 238 TCCTTCCCGGAGCGTCAGTTCTGGGAGTCGCAGTCCTCCTCCTCGTGGAAAGAGTCCTGC 297
|||||| || ||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct 313 TCCTTCGCGAAGCGTCAGTTCTGGGAGTCGCAGTCCTCCACGTCGTGGAAAAAGTCCTGC 372
Query 298 TGGACCTGCTAGGCGAGGTCGctctcctcctcctcctcctccACAATCTAAAAGAGCATC 357
||||||||||||||||||||| || ||||||||||||||| ||||||| |||||||
Sbjct 373 TGGACCTGCTAGGCGAGGTCG-----CT-CTCCTCCTCCTCCACCATCTAAAGGAGCATC 426
Query 358 TTCACCTTCTAAGAAAGCTGTTCAAGAATCTCTTGTTCTTTATGTTGATTCTCTTAGCAG 417
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 427 TTCACCTTCCAAGAAAGCTGTTCAAGAATCTCTTGTTCTCCATGTTGATTCTCTTAGCAG 486
Query 418 GAATGTGAATGAAGGCCATCTCAAAGAGATATTCGGCAACTTTGGTGAAGTTATACACGT 477
|||||||||||||| |||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 487 GAATGTGAATGAAGCCCATCTCAAAGAAATCTTTGGCAACTTTGGTGAAGTTATACATGT 546
Query 478 CGAAATTGCCATAGATCGATCTGTTAATCTTCCAAAAGGACATGCTTATGTTGAGTTCAA 537
||||||||| || |||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct 547 CGAAATTGCGATGGATCGAGCTGTTAATCTTCCAAGAGGACATGGTTATGTTGAGTTCAA 606
Query 538 GGCAAGAGCTGATGCTGAGAAAGCGCAGCTGTTCATGGATGGTGGCCAAATTGATGGAAA 597
|||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||
Sbjct 607 GGCAAGAGCTGATGCTGAGAAAGCTCAGCTCTACATGGATGGTGCCCAAATTGATGGAAA 666
Query 598 GGTTGTTAAAGCAACGTTCACACTACCACCTCGTCAGAAAGTATCTTCACCGCCTAAACC 657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 667 GGTTGTTAAAGCAACGTTCACACTACCACCTCGTCAGAAAGTATCTTCACCCCCTAAACC 726
Query 658 TGTCTCAACTGCACCAAAAAGAGATGCTCCTAAATCTGATAATGCTGGTCCTGACACTGA 717
||||||| |||||||||||||||||||||| |||||||||||||||| | ||||| ||||
Sbjct 727 TGTCTCAGCTGCACCAAAAAGAGATGCTCCAAAATCTGATAATGCTGCTGCTGACGCTGA 786
Query 718 GAAAGATGG-G--CCCAGGCGCCCAAGAGAGA------------G-A---C-----TTTC 753
||||||||| | ||||||||||||||||||| | | | ||||
Sbjct 787 GAAAGATGGTGGTCCCAGGCGCCCAAGAGAGACATCTCCTCAACGGAAAACAGGGCTTTC 846
Query 754 TCCAAGAAGGCGATCACCTCTACCTAGGAGAGGCTTATCACCTAGGAG---ATTTCCTGA 810
||| ||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 847 TCCGAGAAGGCGATCACCTCTACCTAGGAGAGGCTTATCACCTAGAAGGCGATCACCTGA 906
Query 811 TTCTCCCCATCGCCGGAGGCCGGGATCTCCTATCCGTCGTCGCGGTGATACACCTCCTAG 870
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 907 TTCTCCCCATCGCCGGAGGCCGGGCTCTCCTATCCGCCGTCGCGGTGATACACCTCCTAG 966
Query 871 GCGCAGGCCAGCATCACCATCTAGAGGCCGTTCTCCATCTTCTCCGCCTCCAAGACGAAA 930
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 967 ACGTAGGCCAGCATCACCATCTAGAGGCCGTTCTCCATCTTCTCCCCCTCCAAGACGATA 1026
Query 931 TAGATCTCCTCCAAGCAGGGGATCCCCTAGAAGAATCCGTGGCAGTCCTGTTCGAAGACG 990
||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 1027 TAGATCTCCTCCAAG--GGGC-TCCCCTAGAAGAATTCGTGGCAGTCCTGTTCGAAGAAG 1083
Query 991 GTCTCCTCCTCCTCTAAGACGAAGGTCTCCACCTCCAAGGAGACTACGCAGTCCTCCCAG 1050
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GTCTCCTCTTCCTCTAAGACGAAGGTCTCCACCTCCAAGGAGACTACGCAGTCCTCCCAG 1143
Query 1051 AAGATCTTCAATCCGCAGGCGTAGCCGATCCCCAATTCGTAGGCCTGGTCGCTCTCGTTC 1110
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 AAGATCTCCAATCCGTAGGCGTAGCCGATCCCCAATTCGTAGGCCTGGTCGCTCTCGTTC 1203
Query 1111 AAGGTCCATCTCACCCCGCA 1130
||| ||||||||||||||||
Sbjct 1204 AAGTTCCATCTCACCCCGCA 1223
Score = 327 bits (177), Expect = 1e-88
Identities = 239/265 (90%), Gaps = 19/265 (7%)
Strand=Plus/Plus
Query 1131 GGGGACGAGGTCCAGCTGGGAGACGTGGGAGGTCTTCTTCTTACTCTAGTTCGCCAAGTC 1190
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1257 GGGGACGAGGTCCAGCTGGGAGACGTGGGAGGTCATCTTCTTACTCTAGTTCACCAAGTC 1316
Query 1191 CCAGAAGGATTCCTAGGAAGATTTCAAGGAGCCGCAGTCCTAGGAGGCCACTGAGAGGAA 1250
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1317 CCAGAAGGATTCCTAGGAAGATTTCAAGGAGCCGCAGTCCTAAGAGGCCACTGAGAGGAA 1376
Query 1251 AAAGAagcagcagtaacagcagcagcagcagTTCACCGccaccaccaccaccaccTCGCA 1310
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1377 AAAGAAGCAGCAGTAACAGCAGCAGCAGCAGTTCACCGCCACCACCACCTCCACCTCGTA 1436
Query 1311 AAACTTaaa----a-aaaaa--aaaaaaa------------CTTGAGTCTTCATGTAGCT 1351
||||||||| | ||||| ||||||| |||||||||| ||||||||
Sbjct 1437 AAACTTAAAGGTGATAAAAATTAAAAAAAAAAAAAAAAAAACTTGAGTCTTGATGTAGCT 1496
Query 1352 CTCTTTCTCCATCTTTATCTTTATC 1376
||||||||||||||||||| |||||
Sbjct 1497 CTCTTTCTCCATCTTTATCGTTATC 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5