BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471862
Length=2663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16630.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 2320 0.0
AT2G16270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 235 2e-60
> AT1G16630.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT2G16270.1); Has 10587 Blast hits to 5736 proteins
in 617 species: Archae - 88; Bacteria - 963; Metazoa -
3686; Fungi - 820; Plants - 541; Viruses - 438; Other Eukaryotes
- 4051 (source: NCBI BLink). | chr1:5682118-5684867 REVERSE
LENGTH=2750
Length=2750
Score = 2320 bits (1256), Expect = 0.0
Identities = 1573/1722 (91%), Gaps = 37/1722 (2%)
Strand=Plus/Plus
Query 975 GAAGACGCAGAGAAAATTGTAGATGTGGATGGTGATGAGCGTTTGGAAGCAGCGGTGAGT 1034
|||| ||||||| ||||| | ||||| |||||||| |||||||||||||| | | ||||
Sbjct 1025 GAAGCCGCAGAGGAAATTCTGGATGTTGATGGTGAAGAGCGTTTGGAAGCTGTAGAGAGT 1084
Query 1035 GATGATGATGAAGAAG-A--AGTAGTTGGTGAAAGCATTGAAGAAGAAGAAACTCATCAG 1091
|||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1085 GATGATGAAGAAGAAGAAGTAGTAGTTGGCGAAAGCATTGAAGAAGAAGAAACTCATCAG 1144
Query 1092 ATTTCAAAACTGTCTCGTTT---CAAGACATCCAAGTTGCTTGGTTGGATTTTGGCTCTT 1148
|||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1145 ATTTCAAAACAGTCTCGTTTCAGCAAGACATCCATGTTGCTTGGTTGGATTTTGGCTCTT 1204
Query 1149 GGTGTGGCGTATCTGTTGGTGGTTTCTTCAACCAC-TTTTGCTGAACAAAACATCTCAGA 1207
|||||||||||||||||| ||||||||||||| || |||| || |||||| |||| ||||
Sbjct 1205 GGTGTGGCGTATCTGTTGTTGGTTTCTTCAACGACGTTTT-CTCAACAAACCATCACAGA 1263
Query 1208 TTCACCTTTCTATCAATTTCACATTTCACCAGAGATCATAATGGCTGCAAGGGCCAACTT 1267
||||||||||||||| ||| |||| || ||||||||||||||| |||| || | |||||
Sbjct 1264 TTCACCTTTCTATCAGTTTAACATCTCTCCAGAGATCATAATGTCTGCTAGCGAGAACTT 1323
Query 1268 TGAGCAGTTGGGTGCAAAGCTAAGGATGTGGGCAGAGTCATCACTTATGTATCTTGATAA 1327
||||||||||||||||||||| |||||||||||||| |||||| || |||||||||||||
Sbjct 1324 TGAGCAGTTGGGTGCAAAGCTGAGGATGTGGGCAGAATCATCATTTGTGTATCTTGATAA 1383
Query 1328 GCTGGTCTCAAGTCTACGAGAAGAAGAGGGATA-TGTTCCTTTTCAATTTCATAACTTGA 1386
|||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||
Sbjct 1384 GCTGGTCTCAAGTCTACGAGAAGAGGAGGGA-AGTGTTCCTTTTCAATTTCATAACTTGA 1442
Query 1387 CAGATGTTTTGGAAGACAAAAGATTGTCTGATACTGTTTTCCAGCCAACTAGTGGTGAAA 1446
||| | |||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||
Sbjct 1443 CAGTTCTTTTGGAAGACAAAAGGTTGTCTGATGCTGTTTTCCAGTCAACTAGTGTTGAAA 1502
Query 1447 TCAGTGTTGCTGGGTTCATAGTGGATAGCTTAGAAATGGATATAGAAGAAGAGACTGTTG 1506
||| ||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 1503 TCATTGTTGATGGGTTCATAGTGGATAGCTTAGAAGTGGATATAGAAGAAGTGAATGTTG 1562
Query 1507 GTCATCAGGAACCTGAAAAAGAACCGGAGAACAGTGGTGAAATCAGTTTTGAAGCTGTCT 1566
||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||
Sbjct 1563 GTCATCAGGAACCTGAAGAAGAATCGGAAAACAGTGGTGAAATCAGTCTTGAAGCTGTCT 1622
Query 1567 ACGAAG-AG--GGTGAT-AA-T---G-A--AG---G-AGAA-G--AGGTAAGCTCAGAAA 1608
|||||| || | | || || | | | || | |||| | |||||| || |||||
Sbjct 1623 ACGAAGAAGATGATAATGAAGTCGAGCAGGAGAATGAAGAAGGAAAGGTAAACTTAGAAA 1682
Query 1609 TTGTTGATGAATGTGATGAGCAGGCTGAGATCAAGATAGCCACAGATACAGAGGTGAATG 1668
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1683 TTGTTGATGAATGTGATGAGCAGGCTGAGATCAAGATAGCTACAGATACAGAGGTGAACG 1742
Query 1669 GAGGTGAAAGGTATTCAGAATCTCTTTCTGAAGAAGGAAATGGTGGCCAAGAAACTGATG 1728
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1743 GAGGTGAAAGGTATTCAGAATCTCTTTCTGAAGAAGGACATGGTGGCCAAGAAACTGATG 1802
Query 1729 TTGTTGAAGGGCAGGGAGAATATGAAGAAAATGACCAGAAGAACATACAAGAAGCTGTTT 1788
||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 1803 TTGTTGAAGGGCAGGAAGAATATGAAGAAAATGACCAGAATAACATGGAAGAAGCTGAAT 1862
Query 1789 CCGACGCACACCAGCTTGATGATGTGGAGTCTGCTGCAATCAGTGGTCACCAGCAAGAAC 1848
|||||||||| | |||||| |||||| ||||||||||||||||| || ||||||||||||
Sbjct 1863 CCGACGCACAACTGCTTGACGATGTGCAGTCTGCTGCAATCAGTAGTAACCAGCAAGAAC 1922
Query 1849 AAACAGAAGTAGCCAATGTTGAAACTGTACCAGAAGAAGAAGGTGTTGGGGAAATTGCTG 1908
|||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1923 AAACCGGAGTAGCCAATGTTGAAACTGTACAAGAAGAAGAAGGTGTTGGGGAAATTGCTG 1982
Query 1909 GAAGTAGCCGCAGTGTTTCAGAAGAAGCTACAGATTTTGAACATGATGGTAATGATTTAA 1968
|| |||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 1983 GAGGTAGCCTCAGTGTTTCAGAAGAAGCTACAGATGTTGAACATGACGGTAATGAAGTAG 2042
Query 1969 AAGAAGAAGAGAGTGGGTTTGCTGAAGTTGTTAATGATGCAGGCTCGGAGGAGATTTTGT 2028
||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 2043 AAGAAGAAGAGAGTGGGTTTGGTGAAGTTGTTAATGATGCAGGTTCGGAGGACATTTTGT 2102
Query 2029 TGAGTAACCAGAAGAAAGTGATAGTCTTGTTTTCGACTCTGATGGTTCTACTTGCAGCAG 2088
||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 2103 TGAGTGGCCAGAAGAAAGTGTTAGTCTTGTTTTCGACTATGATGGTTATACTTGCAGCAG 2162
Query 2089 CAGCAGCTGGTTTCTTGTTATCCAAGAAGAAGACAAACCCTGTCATGCTGCAACATGAAG 2148
||||||||||||| | ||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct 2163 TAGCAGCTGGTTTCCTATTAGCCAAGAAGAAGACAAAACCTGTGATGCTGCAACATGAAG 2222
Query 2149 ATGGTGAACCAACAACAATCTCTGCAACTAAAGTTGTTGAGCATGTGCCAGTAGAGAATC 2208
|||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2223 ATGGCGAACCAACAGCAATCTCTGCAACTAAAGTTGTCGAGCATGTGCCAGTAGAGAATC 2282
Query 2209 TGATAAAAGAAAGGCTTTCTTCACTGAATTTCAA-G--GAAGAAGAAGAAGTTGGTGATG 2265
|||| | |||||||||||||||| |||||||||| | ||||||||||||||||||||||
Sbjct 2283 TGATCAGAGAAAGGCTTTCTTCATTGAATTTCAAGGAAGAAGAAGAAGAAGTTGGTGATG 2342
Query 2266 ACAGAAAAAGAGAGGTATCATCATTCCCTTCTGAGATGAGTTTCAGTTTCAGTAAGAACA 2325
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2343 ACAGAAAAAGAGAGGTATCATCATTCCCTTCTGAGATGAGTTTCAGCTTCAGTAAGAACA 2402
Query 2326 AATCATTACACAGCTGCAGCAACAACAGAA-ATGATCTTAAAGAATATCAAAGCGGAGGA 2384
|| |||||||||||||||||||||| | || |||||||||||||| ||||||||||||||
Sbjct 2403 AACCATTACACAGCTGCAGCAACAAGA-AAGATGATCTTAAAGAACATCAAAGCGGAGGA 2461
Query 2385 GAAGGCAAGAAGAGTAATGATAGCGGCGAATCCATGGCTTCCTCGGCATCAGAATACTCC 2444
| |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 2462 GGAGGCAAGAAGAGTAATGATAGCGGTGAATCCATGGCTTCCTCTGCATCAGAGTACTCC 2521
Query 2445 ATAGGCTCTGTATCATATGGGAGTTTCACAACATACGAGAAGATACAAACA-AGAAGTGG 2503
||||| ||||| |||||||| |||||||||||||| ||||||||||||| | ||||||||
Sbjct 2522 ATAGGTTCTGTTTCATATGGAAGTTTCACAACATATGAGAAGATACAAA-AGAGAAGTGG 2580
Query 2504 TCACAAAGAGAAAGAGATGATAACACCTGTGAGACGTTCAAGCAGGATCAGGAACAATCA 2563
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2581 TCACGAAGAGAAAGAGATGATAACACCTGTGAGACGTTCAAGCAGGATCAGGAACCATCA 2640
Query 2564 ACATTCTGGACAATGAATTAGAATTAGCTTT-GACTTTATGATCTACTGATTTGTAGGAA 2622
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2641 ACATTCTGGACAATGAGTTAGAATTAGCTTTTGACTTTATGATCTACTGATTTGTAGGAA 2700
Query 2623 G-CTTTTCCATCTCACTGAAGCTTAATTAGTATGTTGCTTTC 2663
| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2701 GGCTTTTCCATCTCACTGAAGCTTAATTAGTATGTTGCTTTC 2742
Score = 1369 bits (741), Expect = 0.0
Identities = 908/988 (92%), Gaps = 14/988 (1%)
Strand=Plus/Plus
Query 1 CATTCATAATCTTGCAGATTCTTGCATATTTTCTTTCCTTTAACGAGCGCAAAAGATCTG 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 13 CATTCACAATCTTGCAGATTCTTGCATATTTTCTTTCCTTTAACGAGCGCAAAAAATCTG 72
Query 61 AGATTTATTAAATAATTCATTCTGATTACCGAAGTTGATTTTCAATCATGGcttcttctc 120
|||||| |||||||| |||||||||| ||| || ||||||||| ||||||| |||||||
Sbjct 73 AGATTTGTTAAATAACCCATTCTGATTTCCGGAG-TGATTTTCATTCATGGCGTCTTCTC 131
Query 121 ctgctaggaacaagatctctgtttctccttcttctcttttgtcttcctcttctccttcAA 180
| || | |||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 132 CAGCAAAGAACAAGATCTCTGTTTCTCCTTCTTCTCTATTCTCTTCCTCTTCGCCTTCAA 191
Query 181 TGCCTTCCAGACCAAACCCTAAACTCAGAAACTCGGAGACCGGAGATCTGATGCGTCGCA 240
|||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 192 TGCCTTCCAGACCAAACCCTAAGCAAAGAAACTCGGAAACCGGAGATCTGATGCGTCGCA 251
Query 241 GTTTTCGAGGCAACCCATTTCCGGCGGATTCGTCCCGGAGAAACTCAATCGGTAGAGAAT 300
|||| |||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 252 GTTTCCGAGGCAATCCATTTTCGGCAGATCCGTCCCGGAGAAACTCAATCGGTAGAGAAT 311
Query 301 GCAACAATCGTGTTGAGTTTGGTGATAAAGAGAATCAGCACGACAAAGATCAAATCTG-T 359
||| |||||||||||| |||||||||||||||||||| ||||||| ||||||||| | |
Sbjct 312 GCAGTAATCGTGTTGAGATTGGTGATAAAGAGAATCAGAACGACAAGGATCAAATC-GCT 370
Query 360 AATGTCGTCAAAGTTCCAACAAAAGGTTCCAAGCATTTCATGTCACCGACAATTTCAGCC 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AATGTCGTCAAAGGTCCAACAAAAGGTTCCAAGCATTTCATGTCACCGACAATTTCAGCC 430
Query 420 GTTTCCAAGATCAATCCATCGCCGAGGAAGAAGATCTTGTCTGATAAAAACGAAGTGTCT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GTTTCCAAGATCAATCCATCGCCGAGGAAGAAGATCTTGTCTGATAAAAACGAAGTGTCT 490
Query 480 CGATCCTTTGACAAAACACATCATCAGGTTCAGGTGAAGTCGTCTGTCTCATTTTCTGAT 539
||||||||||||||| | ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 491 CGATCCTTTGACAAATCCCATCACCAGGTTCAGGTAAAGTCGTCTGTCTCGTTTTCTGAT 550
Query 540 GTGATTAGCATCATTGGGGAAGATAAAGATC-ATGAGCAGACTTACATCGATGAAAAGAA 598
||||| |||||||||||||||||||||||| | || |||| || ||||||||||| ||
Sbjct 551 GTGATAAGCATCATTGGGGAAGATAAAGATGTA-GACCAGATTTGCATCGATGAAACTAA 609
Query 599 GCAGCTTCATGAAGAGGAGTCGCATGACATTACTGTCACTGATTTCGATGAGACTATTGA 658
|||||||| ||||||||| || ||||| |||||||||| |||||||||||||| | ||||
Sbjct 610 GCAGCTTCGTGAAGAGGAATCACATGATATTACTGTCAGTGATTTCGATGAGATTCTTGA 669
Query 659 GAACAAGAGTAATGATGATTCAAGCTTCAAGATCAGTCCTCTTCCTCCTTCTGTTCCATA 718
|| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 670 GAGGAAGAGTAATGATAATTCAAGCTTCAAGATCAGTCCTCTTCCTCCTTATGTTCCATG 729
Query 719 CACATTCCCTGTGTTTGAGTCTCATGAAGTGGATCCTTTGGTGGCACCTTATGATCCAAA 778
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 730 CACATTTCCTGTGTTTGAGTCTCATGAAGTGGATCCAGTGGTGGCACCTTATGATCCAAA 789
Query 779 GAAGAATTACCTGTCACCGAGGCCTCAGTTTCTTCATTATAAGCCAAATCCAAGAATTGA 838
|||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 790 GAAGAATTACTTGTCACCGAGGCCTCAGTTTCTCCATTATAAGCCAAATCCAAAAATTGA 849
Query 839 CCATCATTTTGATGAGTGCAAGCAGCTTGAGGAGCTTTTCATCTCTGAAAGCTCTTCTTC 898
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GCATCGTTCTGATGAGTGCAAGCAGCTTGAGGAGCTTTTCATCTCTGAAAGCTCTTCTTC 909
Query 899 TGACACTGATTTGTCTGCAGA--G-GA--A--A-GC-CAACAAGAGGAGGAAGTTTCTTC 949
||||||||||||||||||||| | || | | | |||||||||||||||||| ||||
Sbjct 910 TGACACTGATTTGTCTGCAGAACGAGAGGAGGAAGGTCAACAAGAGGAGGAAGTTGCTTC 969
Query 950 TCAGGAAGGTGTAGTTGCAGGAGAAGAA 977
|||||||||||||||||||| |||||||
Sbjct 970 TCAGGAAGGTGTAGTTGCAGTAGAAGAA 997
> AT2G16270.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G16630.1);
Has 1844 Blast hits to 1256 proteins in 271 species: Archae
- 6; Bacteria - 283; Metazoa - 434; Fungi - 153; Plants - 91;
Viruses - 52; Other Eukaryotes - 825 (source: NCBI BLink).
| chr2:7045538-7048326 REVERSE LENGTH=2499
Length=2499
Score = 235 bits (127), Expect = 2e-60
Identities = 191/222 (86%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 704 TCCTTCTGTTCCATACACATTC-CCTGTGTTTG-AGTCTCATGAAGTGGATCCTTTGGTG 761
||||||||||||||| ||| || |||| ||||| || || |||||| ||| | ||| ||
Sbjct 565 TCCTTCTGTTCCATATACA-TCTCCTGAGTTTGCAG-CTTGTGAAGTTGATACATTGTTG 622
Query 762 GCACCTTATGATCCAAAGAAGAATTACCTGTCACCGAGGCCTCAGTTTCTTCATTATAAG 821
| ||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 623 CCTCCTTATGATCCCAAGAAGAATTTTCTGTCGCCGAGGCCTCAGTTTCTTCATTATAAG 682
Query 822 CCAAATCCAAGAATTGACCATCATTTTGATGAGTGCAAGCAGCTTGAGGAGCTTTTCATC 881
|| ||||||||||| || | | |||||||||||| |||||||||||||| |||||||||
Sbjct 683 CCGAATCCAAGAATCGAGAAGCGTTTTGATGAGTGTAAGCAGCTTGAGGAACTTTTCATC 742
Query 882 TCTGAAAGCTCTTCTTCTGACACTGATTTGTCTGCAGAGGAA 923
||||||||||||||| ||||||||| ||||||| ||| |||
Sbjct 743 TCTGAAAGCTCTTCTGATGACACTGAATTGTCTGTAGAAGAA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132240061748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5