BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471863
Length=1603
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16670.1 | Symbols: | Protein kinase superfamily protein | ... 2207 0.0
> AT1G16670.1 | Symbols: | Protein kinase superfamily protein
| chr1:5697324-5699769 FORWARD LENGTH=1720
Length=1720
Score = 2207 bits (1195), Expect = 0.0
Identities = 1365/1444 (95%), Gaps = 24/1444 (2%)
Strand=Plus/Plus
Query 1 TCAGTCTTCCATTTCAACAAATCCGTAATCTGATCTCACACACGGCAAGCCACAGATATA 60
|||||||||||||||||||||||| ||||||||||||||||||||| || ||| | |||
Sbjct 13 TCAGTCTTCCATTTCAACAAATCCTTAATCTGATCTCACACACGGCGAG--ACACACATA 70
Query 61 TagagagagagagagaTAGCGACTCTGATCGCGTAAAGCCACTTGCTTTTTATACCAACT 120
|||| | ||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 71 TAGA-ATAGAGATAGACAGCGACTCTGATCGCGTAAAGCCACATGCTTTTTATACAAACT 129
Query 121 CTACCCAAGT-CGCAAG--TTTTTAACCTGCGATTTCTGAAT-C-TTT-T-tctctctct 173
|||||||| | | |||| ||||||| || | |||||||||| | ||| | |||||||||
Sbjct 130 CTACCCAAATAC-CAAGTTTTTTTAATCTCCCATTTCTGAATCCTTTTCTCTCTCTCTCT 188
Query 174 ctcGATTCTAGCTTCATCGCTGTTCCAAATTTAGG-AGTTTTCTGAGAAACAGGTCACAG 232
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 189 CTCGATTCTAGCTTCATCGCTGTTCCAAATTTAGGAAG-TTTCTGAGAAACAGGTCACAG 247
Query 233 GTCTG---T-C----TTACATTGATGGGTTGCTCCTGGTTCTCATGTCACAGGAGAGGAA 284
||||| | | ||||||||||||||||||||||||| || |||||||||||| |
Sbjct 248 GTCTGTCTTACATAGTTACATTGATGGGTTGCTCCTGGTTATCGTGTCACAGGAGA-G-- 304
Query 285 AAGCTACAGAAGTTGATGGAGAAATTGCAGCGATAGACAATGTAAAGATATACAAATATA 344
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 305 AAGCTACAGAAGTTGATGGAGAAATCGCAGCGATAGACAATGTAAAGATATACAAATATA 364
Query 345 GAGAGATACGTCAGGCCACTGATGATTTCAGTGCTGAAAATAAAATTGGAGAGGGAGGGT 404
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 365 GAGAGATACGTCAGGCCACTGATGATTTCAGTGCTGAAAATAAAATTGGAGAAGGAGGGT 424
Query 405 TTGGTTCTGTGTACAAGGGCTGTCTTAAAGATGGAAAGCTGGCGGCTATCAAAGTCCTCT 464
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 425 TTGGTTCTGTGTACAAGGGCTGTCTTAAAGATGGAAAACTCGCGGCTATCAAAGTCCTCT 484
Query 465 CGGCTGAGTCAAGACAAGGTGTAAAAGAATTCTTGACTGAGATCAATGTGATATCAGAAA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 CGGCTGAGTCAAGACAAGGTGTAAAAGAATTCTTGACTGAGATCAATGTGATATCAGAAA 544
Query 525 TACAGCATGAGAATTTGGTGAAGTTGTATGGATGCTGCGTGGAGGGGAATCACAGGATTC 584
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 545 TACAGCATGAGAATTTGGTTAAGTTGTATGGATGCTGCGTGGAGGGGAATCATAGGATTC 604
Query 585 TTGTTTACAATTTCCTTGAGAACAATAGTCTTGATAAGACGCTTCTAGCTGGGGGCTACA 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TTGTTTACAATTTCCTTGAGAACAATAGTCTTGATAAGACGCTTCTAGCTGGGGGCTACA 664
Query 645 CTCGGAGTGGGATACAGTTTGATTGGAGTAGTCGGGCCAATATTTGTGTTGGGGTTGCTA 704
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CTCGTAGTGGGATACAGTTTGATTGGAGTAGTCGGGCCAATATTTGTGTTGGGGTTGCTA 724
Query 705 AAGGTCTTGCCTTTCTTCATGAAGAAGTACGGCCACACATAATCCATAGAGATATCAAAG 764
|||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct 725 AAGGTCTTGCCTTTCTTCATGAGGAAGTACGCCCACACATAATTCACAGAGATATCAAAG 784
Query 765 CAAGCAACATTCTACTCGACAAATATTTATCCCCCAAGATCTCTGATTTTGGACTCGCTA 824
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 785 CAAGCAACATTCTACTTGACAAATATCTATCCCCCAAGATCTCTGATTTTGGACTTGCTA 844
Query 825 GGCTTATGCCACCTAACATGACTCATGTCAGCACTCGTGTCGCTGGTACAATTGGTTATT 884
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 845 GACTTATGCCACCTAACATGACTCATGTTAGCACTCGTGTCGCGGGTACAATTGGTTATT 904
Query 885 TAGCACCAGAGTATGCTGTTAGGGGACAGTTGACGCGGAAAGCAGATATATACAGCTTTG 944
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 905 TAGCACCAGAGTATGCGGTTAGGGGACAGTTGACGCGTAAAGCTGATATATACAGCTTTG 964
Query 945 GAGTCCTTCTGATGGAGATAGTCAGTGGAAGAAGTAACAAAAACACCCGATTACCCACGG 1004
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 965 GAGTCCTTCTGATGGAGATAGTCAGTGGAAGAAGTAACAAAAACACCCGATTACCCACTG 1024
Query 1005 AATATCAATATCTTCTGGAAAGAGCTTGGGAACTTTATGAGCGGAATGAGCTTGTGGATC 1064
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1025 AGTATCAATATCTTCTGGAAAGAGCTTGGGAACTTTATGAGCGGAATGAGCTCGTGGATC 1084
Query 1065 TTGTTGATTCAGGTTTAAATGGAGTCTTTGATGCAGAGGAAGCTTGTCGGTACCTAAAAA 1124
||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1085 TTGTTGATTCAGGGTTAAATGGAGTGTTTGACGCAGAGGAAGCTTGTCGGTACCTAAAAA 1144
Query 1125 TCGGTCTTTTGTGCACACAAGACAGTCCTAAGCTAAGACCAAGTATGTCCACAGTGGTGA 1184
| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1145 TTGGTCTTTTGTGCACACAAGACAGTCCCAAGCTAAGACCAAGTATGTCCACCGTAGTGA 1204
Query 1185 GGTTGTTAACAGGGGAGAAGGATATAGACTACAGGAAAATAAGCAGACCAGGCTTGATTT 1244
||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 1205 GGTTGTTAACAGGGGAGAAGGATATAGACTACAAGAAAATAAGCAGACCGGGTTTGATTT 1264
Query 1245 CTGATTTCATGGATATGAAAGTGAGAGGACCTGTGGCAACAAAGTCAGAGCAAGTGAACA 1304
|||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 1265 CTGATTTCATGGATTTGAAAGTGAGAGGACCTGTGGCGACGAAGACAGAGCAAGTGAACA 1324
Query 1305 GACAAAACTACACAAACCCTTCTTCTTCGTCTAATGCCTCATCTAGAGATCACTCAAATG 1364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1325 GACAAAACTACACAAACCCTTCTTCTTCGTCTAATGGCTCATCTAGAGATCACTCAAATG 1384
Query 1365 CTTACTCATCAGGGGCTTCATCAGCCAATGCTGGTAATACATTCAGCAGTACCATTTAGA 1424
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1385 CTTACTCATCAGGGGCTTCATCAGCTAATGCTGGTAATACATTCAGCAGTACCATATAGA 1444
Query 1425 AAGA 1428
||||
Sbjct 1445 AAGA 1448
Score = 159 bits (86), Expect = 6e-38
Identities = 106/115 (92%), Gaps = 4/115 (3%)
Strand=Plus/Plus
Query 1493 CTGCAGAAAAGGCGGTCTCTGCCTTGCTGTTGTTCAAGTC-GTCTTCAGTTGCAAACAGA 1551
|||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||
Sbjct 1604 CTGCAGAAAAGGCGGTCTCTGCCTCGCTCTTGTTCAAGTCAGTCTTCAGTTGCAAACAGA 1663
Query 1552 GAGATTTGAGTGT---ATGTATGTAAATATATATATTTATAGATTGAAGTTGAAT 1603
||||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct 1664 GAGATTTGAGTGTTGTATGTATGTATGTAAATATATTTATAGATTGAAGTTGAAT 1718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79166259465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5