BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471863 Length=1603 Score E Sequences producing significant alignments: (Bits) Value AT1G16670.1 | Symbols: | Protein kinase superfamily protein | ... 2207 0.0 > AT1G16670.1 | Symbols: | Protein kinase superfamily protein | chr1:5697324-5699769 FORWARD LENGTH=1720 Length=1720 Score = 2207 bits (1195), Expect = 0.0 Identities = 1365/1444 (95%), Gaps = 24/1444 (2%) Strand=Plus/Plus Query 1 TCAGTCTTCCATTTCAACAAATCCGTAATCTGATCTCACACACGGCAAGCCACAGATATA 60 |||||||||||||||||||||||| ||||||||||||||||||||| || ||| | ||| Sbjct 13 TCAGTCTTCCATTTCAACAAATCCTTAATCTGATCTCACACACGGCGAG--ACACACATA 70 Query 61 TagagagagagagagaTAGCGACTCTGATCGCGTAAAGCCACTTGCTTTTTATACCAACT 120 |||| | ||||| ||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 71 TAGA-ATAGAGATAGACAGCGACTCTGATCGCGTAAAGCCACATGCTTTTTATACAAACT 129 Query 121 CTACCCAAGT-CGCAAG--TTTTTAACCTGCGATTTCTGAAT-C-TTT-T-tctctctct 173 |||||||| | | |||| ||||||| || | |||||||||| | ||| | ||||||||| Sbjct 130 CTACCCAAATAC-CAAGTTTTTTTAATCTCCCATTTCTGAATCCTTTTCTCTCTCTCTCT 188 Query 174 ctcGATTCTAGCTTCATCGCTGTTCCAAATTTAGG-AGTTTTCTGAGAAACAGGTCACAG 232 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 189 CTCGATTCTAGCTTCATCGCTGTTCCAAATTTAGGAAG-TTTCTGAGAAACAGGTCACAG 247 Query 233 GTCTG---T-C----TTACATTGATGGGTTGCTCCTGGTTCTCATGTCACAGGAGAGGAA 284 ||||| | | ||||||||||||||||||||||||| || |||||||||||| | Sbjct 248 GTCTGTCTTACATAGTTACATTGATGGGTTGCTCCTGGTTATCGTGTCACAGGAGA-G-- 304 Query 285 AAGCTACAGAAGTTGATGGAGAAATTGCAGCGATAGACAATGTAAAGATATACAAATATA 344 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 305 AAGCTACAGAAGTTGATGGAGAAATCGCAGCGATAGACAATGTAAAGATATACAAATATA 364 Query 345 GAGAGATACGTCAGGCCACTGATGATTTCAGTGCTGAAAATAAAATTGGAGAGGGAGGGT 404 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 365 GAGAGATACGTCAGGCCACTGATGATTTCAGTGCTGAAAATAAAATTGGAGAAGGAGGGT 424 Query 405 TTGGTTCTGTGTACAAGGGCTGTCTTAAAGATGGAAAGCTGGCGGCTATCAAAGTCCTCT 464 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 425 TTGGTTCTGTGTACAAGGGCTGTCTTAAAGATGGAAAACTCGCGGCTATCAAAGTCCTCT 484 Query 465 CGGCTGAGTCAAGACAAGGTGTAAAAGAATTCTTGACTGAGATCAATGTGATATCAGAAA 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 CGGCTGAGTCAAGACAAGGTGTAAAAGAATTCTTGACTGAGATCAATGTGATATCAGAAA 544 Query 525 TACAGCATGAGAATTTGGTGAAGTTGTATGGATGCTGCGTGGAGGGGAATCACAGGATTC 584 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 545 TACAGCATGAGAATTTGGTTAAGTTGTATGGATGCTGCGTGGAGGGGAATCATAGGATTC 604 Query 585 TTGTTTACAATTTCCTTGAGAACAATAGTCTTGATAAGACGCTTCTAGCTGGGGGCTACA 644 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 TTGTTTACAATTTCCTTGAGAACAATAGTCTTGATAAGACGCTTCTAGCTGGGGGCTACA 664 Query 645 CTCGGAGTGGGATACAGTTTGATTGGAGTAGTCGGGCCAATATTTGTGTTGGGGTTGCTA 704 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 CTCGTAGTGGGATACAGTTTGATTGGAGTAGTCGGGCCAATATTTGTGTTGGGGTTGCTA 724 Query 705 AAGGTCTTGCCTTTCTTCATGAAGAAGTACGGCCACACATAATCCATAGAGATATCAAAG 764 |||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||| Sbjct 725 AAGGTCTTGCCTTTCTTCATGAGGAAGTACGCCCACACATAATTCACAGAGATATCAAAG 784 Query 765 CAAGCAACATTCTACTCGACAAATATTTATCCCCCAAGATCTCTGATTTTGGACTCGCTA 824 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| Sbjct 785 CAAGCAACATTCTACTTGACAAATATCTATCCCCCAAGATCTCTGATTTTGGACTTGCTA 844 Query 825 GGCTTATGCCACCTAACATGACTCATGTCAGCACTCGTGTCGCTGGTACAATTGGTTATT 884 | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 845 GACTTATGCCACCTAACATGACTCATGTTAGCACTCGTGTCGCGGGTACAATTGGTTATT 904 Query 885 TAGCACCAGAGTATGCTGTTAGGGGACAGTTGACGCGGAAAGCAGATATATACAGCTTTG 944 |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| Sbjct 905 TAGCACCAGAGTATGCGGTTAGGGGACAGTTGACGCGTAAAGCTGATATATACAGCTTTG 964 Query 945 GAGTCCTTCTGATGGAGATAGTCAGTGGAAGAAGTAACAAAAACACCCGATTACCCACGG 1004 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 965 GAGTCCTTCTGATGGAGATAGTCAGTGGAAGAAGTAACAAAAACACCCGATTACCCACTG 1024 Query 1005 AATATCAATATCTTCTGGAAAGAGCTTGGGAACTTTATGAGCGGAATGAGCTTGTGGATC 1064 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1025 AGTATCAATATCTTCTGGAAAGAGCTTGGGAACTTTATGAGCGGAATGAGCTCGTGGATC 1084 Query 1065 TTGTTGATTCAGGTTTAAATGGAGTCTTTGATGCAGAGGAAGCTTGTCGGTACCTAAAAA 1124 ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1085 TTGTTGATTCAGGGTTAAATGGAGTGTTTGACGCAGAGGAAGCTTGTCGGTACCTAAAAA 1144 Query 1125 TCGGTCTTTTGTGCACACAAGACAGTCCTAAGCTAAGACCAAGTATGTCCACAGTGGTGA 1184 | |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| Sbjct 1145 TTGGTCTTTTGTGCACACAAGACAGTCCCAAGCTAAGACCAAGTATGTCCACCGTAGTGA 1204 Query 1185 GGTTGTTAACAGGGGAGAAGGATATAGACTACAGGAAAATAAGCAGACCAGGCTTGATTT 1244 ||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| Sbjct 1205 GGTTGTTAACAGGGGAGAAGGATATAGACTACAAGAAAATAAGCAGACCGGGTTTGATTT 1264 Query 1245 CTGATTTCATGGATATGAAAGTGAGAGGACCTGTGGCAACAAAGTCAGAGCAAGTGAACA 1304 |||||||||||||| |||||||||||||||||||||| || ||| ||||||||||||||| Sbjct 1265 CTGATTTCATGGATTTGAAAGTGAGAGGACCTGTGGCGACGAAGACAGAGCAAGTGAACA 1324 Query 1305 GACAAAACTACACAAACCCTTCTTCTTCGTCTAATGCCTCATCTAGAGATCACTCAAATG 1364 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1325 GACAAAACTACACAAACCCTTCTTCTTCGTCTAATGGCTCATCTAGAGATCACTCAAATG 1384 Query 1365 CTTACTCATCAGGGGCTTCATCAGCCAATGCTGGTAATACATTCAGCAGTACCATTTAGA 1424 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1385 CTTACTCATCAGGGGCTTCATCAGCTAATGCTGGTAATACATTCAGCAGTACCATATAGA 1444 Query 1425 AAGA 1428 |||| Sbjct 1445 AAGA 1448 Score = 159 bits (86), Expect = 6e-38 Identities = 106/115 (92%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 1493 CTGCAGAAAAGGCGGTCTCTGCCTTGCTGTTGTTCAAGTC-GTCTTCAGTTGCAAACAGA 1551 |||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| Sbjct 1604 CTGCAGAAAAGGCGGTCTCTGCCTCGCTCTTGTTCAAGTCAGTCTTCAGTTGCAAACAGA 1663 Query 1552 GAGATTTGAGTGT---ATGTATGTAAATATATATATTTATAGATTGAAGTTGAAT 1603 ||||||||||||| ||||||||| || ||||||||||||||||||||||||| Sbjct 1664 GAGATTTGAGTGTTGTATGTATGTATGTAAATATATTTATAGATTGAAGTTGAAT 1718 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79166259465 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5