BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471866
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16700.1 | Symbols: | Alpha-helical ferredoxin | chr1:57097... 1616 0.0
AT1G79010.1 | Symbols: | Alpha-helical ferredoxin | chr1:29724... 931 0.0
> AT1G16700.1 | Symbols: | Alpha-helical ferredoxin | chr1:5709725-5711902
FORWARD LENGTH=1061
Length=1061
Score = 1616 bits (875), Expect = 0.0
Identities = 971/1015 (96%), Gaps = 15/1015 (1%)
Strand=Plus/Plus
Query 1 TTCCGATGATCGTGAATCACTAGCAAAGGATTC--G----TGTTCTTGTGAGATCGAACT 54
|||||| || |||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 29 TTCCGACGACCGTGAATCACCAGCAAAGGATTCGTGTCAATGTTCTTGTGAGATCGAACT 88
Query 55 TTCTCTGGGTTCGTGCAGAAGC-TTACTTCTTTGAGTATCGTGTTTAAGGCACATCGAAG 113
|||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||
Sbjct 89 TTCTCTGGGTTCGTGCAGAAGCTTTGCTTTTTTGAGTATCGCGTTTAAGGCACATCGAAG 148
Query 114 AAGAAAGACCCAAATTTGATATTCGGAGTTCTATCGATGGCTTCGTTACTGGCTCGCAGG 173
|||| |||||| ||||||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 149 AAGAGAGACCCTAATTTGATATTTTGAGTTCTATCGATGGCTTCGCTACTAGCTCGCAGG 208
Query 174 TCGTTCAGTGCTCTCCGAGCTCGACAACTCGCTTTTTCAGGGCAAGGTTTACAGGGATCT 233
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 209 TCGTTCAGTGCTCTCCGAGCTCGACATCTCGCTTTTTCAGGGCAAGGTTTACAGGGATCT 268
Query 234 CATCTCTGTGGGCTACAGTCCCGTGCTATATCTTATGGAAGCAACAAAGATGATGAAGAA 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CATCTCTGTGGGCTACAGTCCCGTGCTATATCTTATGGAAGCAACAAAGATGATGAAGAA 328
Query 294 GCTGAGCAGCTTGCTAAAGAGATCTCCAAGGACTGGAGTACTGTCTTTGAACGGAGCATG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GCTGAGCAGCTTGCTAAAGAGATCTCCAAGGACTGGAGTACTGTCTTTGAACGGAGCATG 388
Query 354 AACACCCTATTTCTCACTGAAATGGTCAGGGGTTTGTCGCTGACCCTCAAGTACTTCTTT 413
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 389 AACACCCTATTTCTCACTGAAATGGTCAGGGGTTTGTCACTGACCCTCAAGTACTTCTTT 448
Query 414 GATCCAAAAGTTACAATCAATTATCCTTTTGAGAAGGGTCCATTGAGCCCTCGCTTCCGT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 449 GATCCAAAAGTTACAATCAATTATCCTTTTGAGAAGGGTCCATTGAGCCCTCGTTTCCGT 508
Query 474 GGTGAACATGCTCTTCGAAGGTATCCAACTGGGGAAGAACGCTGCATTGCCTGCAAACTC 533
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GGTGAACACGCTCTTCGAAGGTATCCAACTGGGGAAGAACGCTGCATTGCCTGCAAACTC 568
Query 534 TGTGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAGGAGCGGGAAGATGGA 593
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TGCGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAGGAGCGGGAAGATGGA 628
Query 594 AGCCGCAGAACCACTAGGTATGATATCGACATGAC-AAAGTGCATCTACTGTGGTTTCTG 652
||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 629 AGCCGCAGAACCACTAGGTATGATATCGACATGACGAAA-TGCATCTATTGTGGTTTCTG 687
Query 653 CCAAGAAGCTTGCCCTGTTGATGCAATTGTCGAAGGACCAAACTTTGAGTTTGCAACTGA 712
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 688 CCAAGAAGCTTGCCCTGTTGATGCAATCGTGGAAGGACCAAACTTTGAGTTTGCAACCGA 747
Query 713 GACACATGAGGAACTTCTGTATGACAAAGAGAAGCTTCTTGAGAATGGAGATAGGTGGGA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GACACATGAGGAACTTCTGTATGACAAAGAGAAGCTTCTTGAGAATGGAGATAGGTGGGA 807
Query 773 GACAGAGATTGCAGAGAATCTGAGGTCGGAGAGCCTCTACCGCTGAATATTGATCCGAAT 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GACAGAGATTGCAGAGAATCTGAGGTCGGAGAGCCTCTACCGCTGAATATTGATCCGAAA 867
Query 833 ATGTCTTTTGTCTAATTCTTCAGGAAACGTTTTCGTTTGCTTCTGTTACAAATAAAGATG 892
||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 868 ATGCCTTTTGCCTAATTCTTAAGGAAACGTTTTCGTTTGCTTCTGTTACAAATAAAGATG 927
Query 893 CTTCAGCTTTTGCACTGTTATTG-TAATCTGTATTGCTTGAGTTCATACCGATGGCAAAA 951
||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 928 CTTCAGCCTTTGCACTGTTATTGCTA-TCTGTATTTCTTGAGTTCATACCGATGGCAAAA 986
Query 952 TCAAACTTTGG-TTTGTTTCCGGTT-GTAGCTGGACCGTGAGGTAAATGGTTTAT 1004
||||| ||||| ||||||||||||| | |||||||||||| ||||||||| ||||
Sbjct 987 TCAAA-TTTGGCTTTGTTTCCGGTTTG-AGCTGGACCGTGCGGTAAATGGATTAT 1039
> AT1G79010.1 | Symbols: | Alpha-helical ferredoxin | chr1:29724879-29727028
REVERSE LENGTH=1023
Length=1023
Score = 931 bits (504), Expect = 0.0
Identities = 647/716 (90%), Gaps = 10/716 (1%)
Strand=Plus/Plus
Query 110 GAAGAA-GAAAG-ACCCAAATTTG-ATATTCGGAGTTCTATCGATGGCTTCG-TTACTGG 165
|||||| ||| | ||| |||| | || || || | || ||| ||||||||| || |||
Sbjct 54 GAAGAAGGAAGGAACCTAAATCGGAAT-TTGGGTGCTCCATCAATGGCTTCGATT-TTGG 111
Query 166 CTCGCAGGTCGTTCAGTGCTCTCCGAGCTCGACAACTCGCTTTT-TCAGGGCAAGGTTTA 224
|||||||||| | | | ||||||| |||||||| |||| |||| |||||||||| ||||
Sbjct 112 CTCGCAGGTCACTGAATACTCTCCGTGCTCGACATCTCG-TTTTGTCAGGGCAAGCTTTA 170
Query 225 CAGGGATCTCATCTCTGTGGGCTACAGTCCCGTGCTATATCTTATGGAAGCAACAAAGAT 284
|||||||||||||| | | | || |||||||||| |||||||||||| ||||||||||||
Sbjct 171 CAGGGATCTCATCTGTCTAGACTGCAGTCCCGTGGTATATCTTATGGCAGCAACAAAGAT 230
Query 285 GATGAAGAAGCTGAGCAGCTTGCTAAAGAGATCTCCAAGGACTGGAGTACTGTCTTTGAA 344
||||||||||| ||||| ||| |||| || |||||||||||||||| |||||||||||||
Sbjct 231 GATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGACTGGAATACTGTCTTTGAA 290
Query 345 CGGAGCATGAACACCCTATTTCTCACTGAAATGGTCAGGGGTTTGTCGCTGACCCTCAAG 404
|||||||| |||||||| || ||||| ||||||||| | |||||||||||||||||||||
Sbjct 291 CGGAGCATAAACACCCTGTTCCTCACAGAAATGGTCCGCGGTTTGTCGCTGACCCTCAAG 350
Query 405 TACTTCTTTGATCCAAAAGTTACAATCAATTATCCTTTTGAGAAGGGTCCAT-TGAGCCC 463
||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||
Sbjct 351 TACTTCTTTGATCCAAAAGTTACTATCAATTATCCATTTGAGAAGGGTCC-TCTGAGCCC 409
Query 464 TCGCTTCCGTGGTGAACATGCTCTTCGAAGGTATCCAACTGGGGAAGAACGCTGCATTGC 523
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 410 TCGCTTCCGTGGTGAACATGCTCTTCGAAGATATCCTACCGGGGAAGAACGCTGCATTGC 469
Query 524 CTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAGGAGCG 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 470 CTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAAGAGAG 529
Query 584 GGAAGATGGAAGCCGCAGAACCACTAGGTATGATATCGACATGACAAAGTGCATCTACTG 643
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 530 GGAAGATGGAAGCCGCAGAACCACTAGGTACGATATCGACATGACAAAATGCATCTACTG 589
Query 644 TGGTTTCTGCCAAGAAGCTTGCCCTGTTGATGCAATTGTCGAAGGACCAAACTTTGAGTT 703
|||||||||||||||||||||||| ||||||||||| || |||||||| |||||||| ||
Sbjct 590 TGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTTGAAGGACCTAACTTTGAATT 649
Query 704 TGCAACTGAGACACATGAGGAACTTCTGTATGACAAAGAGAAGCTTCTTGAGAATGGAGA 763
||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 650 CGCAACCGAGACACACGAGGAACTTCTCTATGACAAAGAGAAGCTTCTTGAGAATGGAGA 709
Query 764 TAGGTGGGAGACAGAGATTGCAGAGAATCTGAGGTCGGAGAGCCTCTACCGCTGAA 819
| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 710 TCGATGGGAGACAGAGATTGCTGAGAATCTGAGGTCGGAGAGTCTCTACCGCTGAA 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49179229913
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5