BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471871
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16750.1 | Symbols: | Protein of unknown function, DUF547 |... 2769 0.0
> AT1G16750.1 | Symbols: | Protein of unknown function, DUF547
| chr1:5729097-5731870 REVERSE LENGTH=1895
Length=1895
Score = 2769 bits (1499), Expect = 0.0
Identities = 1774/1900 (93%), Gaps = 46/1900 (2%)
Strand=Plus/Plus
Query 1 AACTCATCTTCACACATGTCTC-A--AG----ctctc--tctct-t-tctctctcttctt 49
|||||||||||||| ||||||| | || ||||| ||||| | |||||||||||||
Sbjct 1 AACTCATCTTCACAGATGTCTCAAGCAGCTCTCTCTCTTTCTCTCTCTCTCTCTCTTCTT 60
Query 50 tctctGATCACAA-GGTTAATTTGTCTGAATCTCATTCTATTGAGTCATTATTGACCTCT 108
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTGATCACAAGGGTT-ATTTGTCTGAATCTCATTCTATTGAGTCATTATTGACCTCT 119
Query 109 GGAGAGATCCAGACTAAGTTTTGAAACCG------A--CC-A-AA--A--G----T-C-A 148
| |||||||| ||| |||||||||||||| | || | || | | | | |
Sbjct 120 GCAGAGATCCGGACAAAGTTTTGAAACCGACCACAAGTCCAAGAATCATCGATCATACAA 179
Query 149 CAATGTCTGGAGACTCTCTGCTCACATCTAAAC-A--AGGAGGTTCTTTGTCCAGATTCT 205
||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||
Sbjct 180 CAATGTCTGGAGACTCTCTGCTCACATCTAAACAAGGAGGAGGTTCTTTGTCCATATACT 239
Query 206 CAAAGCCAAAGAATGTTACTAAAGAGTTCAACGGTTGTGATTCCCCCAAGAGCAGCAAAT 265
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 240 CACAGCCAAAGAATGTTACTAAAGAGTTCAACGGTCGTGATTCCCCCAAGAACAGCAAAT 299
Query 266 TTCACC-TCTACAGATTTGAACTCGAGCACGATGTGCAGCGGTT-AAAAGATCAACTGCA 323
| |||| | ||||||||||| ||||||||||||||| |||| || |||| ||||| ||||
Sbjct 300 TCCACCAT-TACAGATTTGAGCTCGAGCACGATGTGAAGCGATTGAAAA-ATCAATTGCA 357
Query 324 GAAAGAGACTGCACTGCGCGCTCTATTGCTCAAAGCTTCAGATCAAAGCCATAAGATTGA 383
||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 358 GAAAGAGACTGCAATGCGCGCTCTTTTGCTGAAAGCTTCTGATCAAAGCCATAAGATTGA 417
Query 384 GCTGTCTCACGCATCTTCTCTTCCGCGTAGCGTTCAAGAACTTCTCTCCAACATAGCAGC 443
|||||||||||||||||||||||| || || ||||||||||||||| |||| ||||||||
Sbjct 418 GCTGTCTCACGCATCTTCTCTTCCTCGCAGTGTTCAAGAACTTCTCACCAATATAGCAGC 477
Query 444 TATGGAAGCTACGGTCTCTAAGCTCGAACAAGAGATCATGTCTCTGCATTTCTTGCTGAT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TATGGAAGCTACGGTCTCTAAGCTCGAACAAGAGATCATGTCTCTGCATTTCTTGCTGAT 537
Query 504 TCAAGAACGAAACGAGAGAAAACTTGCCGAGTACAACCTCACTCATTCGCTATCTCCACC 563
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 538 TCAAGAACGAAACGAGAGAAAACTTGCCGAGTACAACCTCACCCATTCTCTATCTCCACC 597
Query 564 TAATGCTTTAGATTTGGTTAGACTTTCCGAGAACAACGAAACTTTACGCAGTAAACATCA 623
|||||||||||||||||||||||||||||| || || |||| | ||||| |||| | ||
Sbjct 598 TAATGCTTTAGATTTGGTTAGACTTTCCGAAAAGAATGAAAGTCTACGCCCTAAAGACCA 657
Query 624 CAGAGCACAACCTAGAAGCAAACTGGCAAAGTCCTTGCAAAGTTTTGATAATGCTAATGA 683
|| ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 658 CAAAGCACAACCTAGAAGCAAAGTGGCAAAGTCCTTGCAGAGTTTTGACAATGCTAATGA 717
Query 684 ACTATCCAAGGAGATGATCAGATGCATGAGAAACATATTTGTGTCTCTAGGAGAGACATC 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACTATCCAAGGAGATGATCAGATGCATGAGAAACATATTTGTGTCTCTAGGAGAGACATC 777
Query 744 CGCAGGATCCAAATCCTCACAAGAGACTACCAGTGTTTCTTCTCGTGAGAATCCTCCATC 803
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 778 TGCAGGATCCAAATCCTCACAAGAGACTGCCAGTGTTTCTTCTCGTGAGAATCCTCCATC 837
Query 804 ATCATCAACATCGTGGTGGTCTCCTTCAGAACACTCACGGATCTCCAGGTGGGCACAGAG 863
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATCATCAACGTCATGGTGGTCTCCTTCAGAACACTCACGGATCTCCAGGTGGGCACAGAG 897
Query 864 TCCACGGATCGATATTCAGAAGAACTCAGATGTTTTAGCAACAGAGAGCAATGCATTTGA 923
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||
Sbjct 898 TCCACGGATCGATATTCAGAAGAACTCAGATGTTTTAGCCACAGAGAGCGATGTGTTTGA 957
Query 924 TCCATATACAGTCCAAGGAAAGCTGAGCTGGGCTGACATCGGGAGTTACAGATCTGCAAC 983
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TCTTTATACAGTCCAAGGAAAGCTGAGCTGGGCTGACATCGGGAGTTACAGATCTGCAAC 1017
Query 984 TGAAGTGGCTTCAATGTCTGTTGAGGAGAAAAGGCTCGCATATGCTTCAGATGAGTTATG 1043
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 TGAAGTGGCTTCAATGTCTGTTGAGGAGAAAAGGCTCGGATATGCTTCAGATGAGTTATG 1077
Query 1044 GAGATTCAGGAACCTCGTCGAAAGACTTGCCAGAGTAAATCCAACAGAACTAAGCCACAA 1103
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1078 GAGATTCAGGAACCTCGTTGAAAGACTTGCCAGAGTAAATCCAGCAGAACTAAGCCACAA 1137
Query 1104 TGAGAAGCTCGCCTTCTGGATCAACATACACAATGCCATGATCATGCATGCATACTTAGC 1163
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1138 CGAGAAGCTTGCCTTCTGGATCAACATATACAATGCCATGATCATGCATGCATACTTGGC 1197
Query 1164 TTACGGCGTACCAAAAACTGATTTAAAGCTCTTCTCCTTGATGCAAAAGGCTGCTTATAC 1223
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TTACGGCGTACCAAAAACTGACTTAAAGCTCTTCTCCTTGATGCAAAAGGCTGCTTATAC 1257
Query 1224 AGTTGGTGGACATTCATACAACGCAGTAACGATCGAATACATGACTCTAAAGATGAGCCC 1283
||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1258 AGTTGGTGGCCATTCATACAACGCAGCAACGATCGAATACATGACTTTAAAGATGAGCCC 1317
Query 1284 TCCTCTGCATCGTCCTCAAATTGCTCTGCTTCTCTCCATTCTCAAGCTGAAAGTATCAGA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TCCTCTGCATCGTCCTCAAATTGCTCTGCTTCTCTCCATTCTCAAGCTGAAAGTATCAGA 1377
Query 1344 TGAACAGAGACAAGCGGGGATAAGTACACCTGAACCTCTAGTGTCATTTGCTCTCAGCTG 1403
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1378 CGAACAGAGACAAGCGGGGATAAGTACACCGGAACCTCTAGTGTCATTTGCTCTCAGCTG 1437
Query 1404 CGGAATGCACTCATCTCCTGCGGTGAGGATATACACAGCCGAGAACGTAGGAGAAGAACT 1463
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1438 CGGGATGCACTCATCTCCTGCGGTGAGAATATACTCAGCCGAGAACGTAGGAGAAGAACT 1497
Query 1464 TGAAGAAGCTCAGAAAGACTATATCCAGGCGTCAGTGGGAGTGAGCCCCAGGGGGAAGTT 1523
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1498 TGAAGAAGCTCAGAAAGATTATATCCAGGCGTCAGTGGGAGTGAGCCCAAGGGGAAAGTT 1557
Query 1524 GATTGTGCCCCAAATGCTTCACTGTTTTGCCAAGAAATATGTCGATGACTGCAAGGTTGC 1583
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1558 GATTGTGCCCCAAATGCTTCACTGTTTCGCCAAGAAATCTGTCGATGACTGCAAGGTTGC 1617
Query 1584 TCTGTGGATTTCACGTCATTTGCCTCCTCGCCAAGCTGCATTTGTTGAGCAGTGTATTCA 1643
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TCTGTGGATTTCTCGTCATTTGCCTCCTCGCCAAGCTGCATTTGTTGAGCAGTGTATTCA 1677
Query 1644 CCGGCGACAACGGTGGGGTTTTCTGGGTTCATCTAGTAGCAAATGCGGCATAGTCCCCTT 1703
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1678 CAGGCGACAATGGTGGGGTTTTCTGGGTTCATCTAGTAGCAAATGCGGCATAGTTCCTTT 1737
Query 1704 TGATTCACGGTTCCGGTATTTGTTTCTTCCGTAGCAAGGCATTGATACGCAATGATGTGA 1763
||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1738 TGATTCACGGTTCCGATATTTGTTTCTTCCGTAGCAAGGCATTGATTCACAATGATGTGA 1797
Query 1764 TTAAAGCAAATACTGTTCCGATCCTAGGGTTTAGGTCTATAATTATTATTTAGGTGATTC 1823
|||||||||||||||||||||||||||||||||| ||||| |||||| | |||||||||
Sbjct 1798 TTAAAGCAAATACTGTTCCGATCCTAGGGTTTAGATCTATGATTATT-T--AGGTGATTC 1854
Query 1824 AATCTTCTTTTCTCTAAACTAATAAACAAATCAAA-GGAT 1862
|||||| ||||||| |||||||||||||||| ||| ||||
Sbjct 1855 AATCTTATTTTCTC-AAACTAATAAACAAAT-AAATGGAT 1892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92168200620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5