BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471873
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16770.1 | Symbols: | unknown protein; Has 109 Blast hits t... 1781 0.0
> AT1G16770.1 | Symbols: | unknown protein; Has 109 Blast hits
to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa
- 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes
- 2 (source: NCBI BLink). | chr1:5737878-5739377 FORWARD
LENGTH=1264
Length=1264
Score = 1781 bits (964), Expect = 0.0
Identities = 1088/1148 (95%), Gaps = 7/1148 (1%)
Strand=Plus/Plus
Query 1 AAGGTAGGAGAATTTTGCAACAATGGGACAAGGTAGAGAAGTTAAGACGAGACCAGATCC 60
||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1 AAGTTAGGAGAATTTTGCAACGATGGGACAAGGTAAAGAAGTTAAGACGAGACCAGATCC 60
Query 61 TCAAGTTGAGATTCAGGAAAGAGGAGAAATATTCTTCTTTTATAGGCCGAAGGTTAACAA 120
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 61 TCAAGTTGAGATTCAGGAAAGAGGAGAAATATTCTTCTTTTATAGACCAAAGGTTAACAA 120
Query 121 AGATGAAGCTCACAGTGTGGACGATGTTCAAAGGTTATACATAGTGATGCGTCCTGAGTC 180
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 AGAAGAAGCTCACAGTGTGGACGATGTTCAAAGGCTATACATAGTGATGCGTCCTGAGTC 180
Query 181 CGGTGAGAATCCCACCCAGGAGAAACAAGACCCTCTTTCAGGTAAAGAAGGTTCCTATAA 240
||||||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||
Sbjct 181 TGGTGAGAATCCCACCGAAGAGAAACAAGACCCTCTTTCAGGTAAAGAAGGCTCCGATAA 240
Query 241 AGATTCCGGTGACGGAGATGCGAGTAGTAGCTCCTCCGGCGCCAAGAACCAAGGTGAAGG 300
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 AGATTCCGGTGACGGAGAGGCGAGTGGTAGCTCCTCCGGCGCCAAGAACCAAGGTGAAGG 300
Query 301 AGGACACGGTGTCGAGAAAGTGAACATCGAGGAACAGCTTCTGCTACGATTCATTGTGAT 360
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 AGGACACGGCGTCGAGAAAGTGAACATCGAGAAACAGCTTCTGCTACGATTCATTGTGAT 360
Query 361 GGGTAAGAAAAGTCTTCCTGATCCAAGCAAGAAATCGCAACCTTTTTGGGGTTTCGTGGA 420
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 361 GGGTAAGAAAAGTCTTCCTGATCCGAGCAAGAAGTCGCAACCTTTTTGGGGTTTCGTGGA 420
Query 421 GATGGTGACGACCAATGTTGAAGATGTTAAAACTGCTCTCAAAGGAGACGAGTATGAGAC 480
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 421 AATGGTGACGACCAATGTTGAAGATGTTAAAAATGCTCTCAAAGGAGAGGAGTATGAGAC 480
Query 481 CAAGACTCGAGGACATAGACACAAACCGCCGGCGAGAGCTGTTGGAGAAGGAATATACAG 540
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 481 GAAGACTCGAGGACATAGACACAAACCTCCGGCGAGAGCTGTCGGAGAAGGAATATACAG 540
Query 541 AATTCTCCGACATAAACCTAGTCCGACTAGAAAGCACCACACACATCTTGTCTACAAACT 600
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 541 AATTCTCCGACATAAACCTAATCCGACAAGAAAGCACCACACACATCTTGTCTACAAACT 600
Query 601 CGAATTCCCATCGGATTT-GCAGACCAGAGCACACGAGCCACAAGAGTCGATGAACATTG 659
|||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 601 CGAATTCCCATCGG-TTTCGCAGACCAGAGAACACGAGCCACAAGAGTCGCTGAACATTG 659
Query 660 AGCCCGAAGGATCCTTCTTGATTCAAATACGAAATCCAGAGCAAGGAGGAGGAGGTAGGT 719
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCCAGAAGGATCCTTCTTGATCCAAATACGAAATCCAGAGCAAGGAGGAGGAGGTAGGT 719
Query 720 CAGGGTTTGGTGGGTTGCAGAGAAAGAGGAAGGCCCAGTTCCCGGCCCATCTTCAAGCTC 779
|||||||||||||| | ||||||||||| ||||||||||| |||| |||| |||| ||||
Sbjct 720 CAGGGTTTGGTGGGCTACAGAGAAAGAGAAAGGCCCAGTTTCCGGTCCATATTCAGGCTC 779
Query 780 ATTTAGGTCATACCCGGTTTGATCCAGCCGACCCGCCCGATTTCCTGAATTATGAAGGAT 839
||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 780 ATTTAGGTCATACCCGGTTTGGGCCAGCCGACCCACCTGATTTCCTGAATTATGAAGGAT 839
Query 840 GTGAGTTGTTACTGATCTCTGCTTCCGACGATATAGAGGAAGAGTTAGGGATGGAGTTGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTGAGTTGTTACTGATCTCTGCTTCCGACGATATAGAGGAAGAGTTAGGGATGGAGTTGG 899
Query 900 AGCCTGAGGGTGACGGTGATGAATCGACATGCGATCTTTTGAAGACTTTCGGGGATGATG 959
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 900 AGCCTGAGGGTGACGGTGAAGAATCGACATGCGATCTTTTGAAGACTTTCGGGGACGATG 959
Query 960 TTAAAGCTACTCCGCTGCTTCGCGGTACATGGGAGTAATGGCGGATGCTCACTAGTCACT 1019
|| ||||||||||| ||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 960 TTGAAGCTACTCCGTTGCTTCGTGGTACATGGGAGTAATAGCTGATGCTCACTAGTCACT 1019
Query 1020 AATATTTTAACTAGATGATAGCTACTAGCTAGTGTTTAAAGTATGGACGGCTTTATGTGG 1079
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 AATATTC---CTAGATGATAGCTACTAGCTAGTGTTTAAAGTATGGACGGCTTTAGGTGG 1076
Query 1080 TTATA-TT-GTCTTTCTCGGGTAAAATGATGATGTATTCTCTTGGTGTCAAGTTCTGTGT 1137
||||| || ||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1077 TTATAGTTTGTCTTTCTCGGGTAAAATGGTGATGTGTTCTCTTGGTGTCAAGTTTTGTGT 1136
Query 1138 AAATCTGT 1145
||||||||
Sbjct 1137 AAATCTGT 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5