BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471877
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16810.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 974 0.0
> AT1G16810.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865);
Has 395 Blast hits to 394 proteins in 162
species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi -
91; Plants - 65; Viruses - 0; Other Eukaryotes - 58 (source:
NCBI BLink). | chr1:5755588-5756895 FORWARD LENGTH=728
Length=728
Score = 974 bits (527), Expect = 0.0
Identities = 594/627 (95%), Gaps = 2/627 (0%)
Strand=Plus/Plus
Query 1 CAGCCAAGAGATGTCGGCATACGACAATGTTATTGGTGGGAAGCTGAAGCTAAAAGGGAA 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 83 CAGCCAAGAGATGTCGGCATACGACAATGTTATTGGTGGGAAGCTAAAGCTAAAAGGGAA 142
Query 61 GGCTTTGGATGTGAAAGCAGGTGGCGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGA 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 143 GGCTTTGGATGTGAAAGCAGGTGGAGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGA 202
Query 121 ACAAGCCCTTAAAATTACTGAACATGAACTCATAGAAGGAGAAAGCACAGAAGCATTGGG 180
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 203 ACAAGCTCTTAAAATTACTGATCATGAACTCATAGAAGGAGAAAGCACTGAAGCATTGGG 262
Query 181 TAAATTGATTGAAGGAGAAGAAGAAGGTGAAGAAATTG-GCAGGAGTGATAAGGCGAGCG 239
||||||||||||||||||||||| || |||||||| || ||||||||| ||||| ||||
Sbjct 263 TAAATTGATTGAAGGAGAAGAAGGAGATGAAGAAA-TGAACAGGAGTGAAAAGGCAAGCG 321
Query 240 AGGATGCGAAGTTGCAGCAGCAGCACGATGATGATGATCTCTTAACGCCAGCAGAAAGGC 299
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 322 AGGATGCGAAGTTGCAGCAGCAGCTCGATGATGATGATCACTTAACGCCAGCAGAAAGGC 381
Query 300 GATACATAGAACAGAAACAGAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAAT 359
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 382 GATACATAGAGCAGAAACAAAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAGT 441
Query 360 CTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACG 501
Query 420 ATATCCCTAAAGTCGGACCTGGTTAATATTATACTTTCTTGGCTTTGTTTTACTCTGCTT 479
||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 502 ATATCCCTAAAGTCGGACCTGGTTAATATAATTCTTTCTTGTCTTTGTTTTACTCTGCTT 561
Query 480 ATCTATTTGGCATTGTTAAACAACTACTTTGGATGTCTGCTATGCTTAGTCCCTATAACT 539
|||||||| |||| ||||||| ||||||||||||||||| |||| ||||||||| |||||
Sbjct 562 ATCTATTTTGCATCGTTAAACGACTACTTTGGATGTCTGTTATGTTTAGTCCCTTTAACT 621
Query 540 TTTCAATTATGTGATCGCCAATCTGTAATGTCAAAAACACATTTTCTTGGAATAATTCTT 599
||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 622 TTTGAATGATGTGATCGCAAATCTGTAATGTCAAAAACACATTTTCTTGGAATATTTCTT 681
Query 600 CTGCATTTCTCAATTTCCTTAATAAAA 626
||||||||||||| ||| |||| ||||
Sbjct 682 CTGCATTTCTCAACTTCTTTAAAAAAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30190722347
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5