BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471880
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16840.4 | Symbols: | unknown protein; BEST Arabidopsis tha... 773 0.0
> AT1G16840.4 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G78890.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr1:5762713-5764034 REVERSE LENGTH=934
Length=934
Score = 773 bits (418), Expect = 0.0
Identities = 480/510 (94%), Gaps = 4/510 (1%)
Strand=Plus/Plus
Query 70 GATGATGGCTCGATCTCTATCTCGTTCACTTTCTCTATCTAAAGGCCGTGTCGCCGCCGG 129
||| |||||||||||| | |||||||||||||||||||| ||||||||| |||||||||
Sbjct 47 GATAATGGCTCGATCTTTCTCTCGTTCACTTTCTCTATCCAAAGGCCGTTTCGCCGCCGC 106
Query 130 GTCATCCTCTCTTCTCCCTTCGTCACAACTTGTTTCATTCCGATCTCAATCTTCCGATCG 189
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 107 GTCATCCTCTCTCCTCCCTTCGTCGCACCTTGTTTCATTCCGATCTCAATCTTCCGATCG 166
Query 190 TCGGGGAGATCTGTACGAGATTGATACAGCCGCGGCCTCGCAATCGCCGTCGGATCCTTT 249
||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 167 TCGGGGAGATCTGTACGAGATTGATACCTCCGCGGCTTCTCAATCGCCGTCGGATCCTTT 226
Query 250 AATACAGAAGCTAGAGGACGCCGTTCACCGGATATTTGTGCGCCGAGCTCAACCTGATTG 309
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 227 AATACAGAAGCTAGAAGACGCCGTTCACCGGATTTTTGTGCGCCGAGCTCAGCCTGATTG 286
Query 310 GCTCCCTTTTGTTCCTGGTGCGTCTTATTGGGTCCCGCCTCCTGGATCTGGATCTCAGTC 369
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 287 GCTCCCTTTTGTTCCTGGTGCGTCTTATTGGGTCCCTCCTCCTGGATCTGGATCTCAGTC 346
Query 370 TCATGGAATCGCTCAGCTCGTTGTGAAACTCGCGAATCCGTTAACCCACGAAGAATCTTT 429
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 347 TCATGGAATCGCTCAGCTCGTTGTGAAACTCGCGAATCCGTTAACACACGAAGAATCTTT 406
Query 430 ATCTACCAATTCTTCTCATGGATGGCCTTCCTCCGATTATTTCCTTAAAGGTGTACAACC 489
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 407 ATCTACCAATTCTTCTCATGGATGGCCTTCCTCCGATTATTTCCTTAAAGGTGTTCAACC 466
Query 490 TCAATTGATGGAGACCAAGACCGAGGCAGCTTCAAATACTGAGTCTCACTCCGAGGACGA 549
||||||||||||||||||||||||| || |||||||| | ||||||||||| ||||||||
Sbjct 467 TCAATTGATGGAGACCAAGACCGAGACAACTTCAAATTCCGAGTCTCACTCTGAGGACGA 526
Query 550 GGAAGCGTAAA--TCGACACTACTT-TTTG 576
||||| ||||| | |||||| ||| ||||
Sbjct 527 GGAAGTGTAAAAAT-GACACTGCTTGTTTG 555
Score = 278 bits (150), Expect = 7e-74
Identities = 188/205 (92%), Gaps = 8/205 (4%)
Strand=Plus/Plus
Query 593 TTCGGACGACCAAGAGCAAGTGCAAAGACGTGAAATAG-ACGACCATATTTCTATACCTG 651
||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 728 TTCGGACAACCAAGAGCAAGTGAAAAGACGTGAAATAGAACGACCATATTTCTATACCTG 787
Query 652 ATCCCGAAATGTGGAATATCGAATAAGAGTAGTTGTTGTAGGC-T-TGTAGCATGTCCCT 709
|| || |||||||||||||||||||||| ||| |||||||||| | |||||||||||||
Sbjct 788 ATACCAAAATGTGGAATATCGAATAAGACTAG-TGTTGTAGGCTTGTGTAGCATGTCCCG 846
Query 710 CTGTTTCTCTTTTTCACAGTTGTTG----TATATATCTCTGTTTCCTTGCTCTTTCACTT 765
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 847 CTGTTTCTCTTTTAAACAGTTGTTGTATATATATATCTCTGTTTCCTTGCTCTTTCACTT 906
Query 766 ATTTAACAAAGAGTTTATGTTAATG 790
||||||||||||||| |||||||||
Sbjct 907 ATTTAACAAAGAGTTCATGTTAATG 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5