BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471887
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16870.1 | Symbols: | mitochondrial 28S ribosomal protein S... 2780 0.0
> AT1G16870.1 | Symbols: | mitochondrial 28S ribosomal protein
S29-related | chr1:5770732-5773251 REVERSE LENGTH=1769
Length=1769
Score = 2780 bits (1505), Expect = 0.0
Identities = 1643/1707 (96%), Gaps = 19/1707 (1%)
Strand=Plus/Plus
Query 1 AGAGATACGAACCAGAGAAATGTGGAAGTTC-GTCGGAAGAATCGCCGCCGGGAATGTCA 59
||||||||||||||||||||||||||||| | || |||||||||||||||||||| ||
Sbjct 76 AGAGATACGAACCAGAGAAATGTGGAAGTACGGT-TTAAGAATCGCCGCCGGGAATGCCA 134
Query 60 AATTGAATCGGAGGTCTTCGATTCTAAATGATACCGTTTGTCATTTCTCACCGCCGACTT 119
|||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 135 AATTGAATCGGAAGTCTTCGATTCTAAATAATACCGTTTGTCATTTCTCACCTCCGACTT 194
Query 120 CAGCCGCCGTGGGAACACTTTTTCCGAGTTTAGATCACGTCCATCGCA-GCTTTTCATCT 178
|||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||
Sbjct 195 CAGCCGCCGTGGGAACACTTTTCCCGAGTTTAGATCACGTTCATCG-ATGCTTTTCATCT 253
Query 179 TCGAAGAGCACGAAATCTTCAATAACCAAGACGAAGAAATCTGAAGGCAAAAAATCCAAA 238
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 254 TCGAAGAGCACGAAATCTTCAATCACCAAAACGAAGAAATCTGAAGGCAAAAAATCCAAA 313
Query 239 CCTAAAGGCGGCGATCCTGGTGCTGCCGGAGCCGAGGACGGAGAGTTTGGAGCCGCCGGT 298
||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 314 CCTAAAGGCGGCGATCCTGGTGCCGCCGGAGCTGAGGAAGGAGAGTTTGGAGCCGCCGGT 373
Query 299 GGAGATGACCTCGAAGCGGGTCGTGCCAAGAGACTAGCTGATGATGAGAAGATTCCGTCT 358
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 GGAGACGACCTTGAAGCGGGTCGTGCCAAGAGACTAGCTGATGATGAGAAGATTCCGTCT 433
Query 359 TTAGATGTTGGTCCTAATGGAAGGCCTCTCTTTACTCCCAAAGATACTACACTTTCGCAG 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 434 CTAGATGTTGGTCCTAATGGAAGGCCTCTCTTTACTCCCAAAGATACTACACTATCGCAG 493
Query 419 CT-ATCTCACAAGGATATTGGCTCCTACTTCAAATTCGATGAGGCAGCATTGAAAGCAGT 477
|| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 494 CTGA-CTCACAAGGATATTGGCTCCTACTTCAAATTCGATGAGGCAGCACTGAAAGCAGT 552
Query 478 TCTTCCGGAGGGATTAGCTTCAGGGATTGAAGATGAGTTCAATGAATCATGGAGACCTGC 537
||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 553 TCTGCCGGAAGGATTAGCTTCAGGAATTGAAGATGAGTTTAATGAATCATGGAGACCTGC 612
Query 538 ATTGCTTGTGAGAAAAAGTTTCTTGGCTCTGAGGGATAATTTTAGCCGCATTGCTGATCC 597
||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 613 ATTGCTTGTCAGAAAAAGTTACTTGGCTCTGAGGGATAATTTTAGACGCATTGCTGATCC 672
Query 598 TCCCATGTGGCCAAGTGACGGTAAAGGTGTCAAACTTAAGAAGCAGATTGTCTTGGATGG 657
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 673 TCCCATGTGGCCAAGTGACAGTAAAGGTGTCAAACTTCAGAAGCAGATTGTCTTGGATGG 732
Query 658 CCCTGTTAAGTGTGGAAAGAGTATTGCTCTGGCGATGCTTGTTCACTGGGCACGTGACGA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CCCTGTTAAGTGTGGAAAGAGTATTGCTCTGGCGATGCTTGTTCACTGGGCACGTGACGA 792
Query 718 AGGCTGGCTAGTTTTATATGCACCAAAAGGACGTGACTGGACTCACGGAGGCTACTTCTA 777
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 793 AGGCTGGTTAGTTTTATATGCACCAAAAGGACGTGACTGGACTCACGGTGGCTACTTCTA 852
Query 778 TAAGAATCCACATACAGGGTTTTGGGACACTCCTCTACAAGCTGAGAATATTCTCAAGGA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 TAAGAATCCACATACAGGGTTTTGGGACACTCCTCTACAAGCTGAGAATATTCTCAAGGA 912
Query 838 TTTTGTCAAGTTCAATGAATCCCGCTTAAGAGAGTTGCGATGCAAAATCCATGATCCTAT 897
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 913 TTTTGTCAAGTTCAATGAATCCCGCTTAAGAGAGTTACGGTGCAAAATCCATGATCCTAT 972
Query 898 CGTGCTTGGAGAGGGTGCGGGTGTAGGATACTTGAAAGGAGCAGATACTATGCCGATTCC 957
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||
Sbjct 973 CGTGCTTGGAGAGGGTGCGGGTGTTGGATACTTGAAAGGAGCAGATGCTATGCCTATTCC 1032
Query 958 CGAGGATTCAACTCTGTATGACCTTGTGCAAATGGGAATTAAGAGCACTCATGCAGCTGT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CGAGGATTCAACTCTGTATGACCTTGTGCAAATGGGAATTAAGAGCACTCATGCAGCTGT 1092
Query 1018 TAATGTCGTAGTGCGACTTAGAAAAGAACTCTCAGTTGTAAAAGATGTACCAGTGTTGAT 1077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TAATGTCGTTGTGCGACTTAGAAAAGAACTCTCAGTTGTAAAAGATGTACCAGTGTTGAT 1152
Query 1078 TGTAATTGATCAATATAACAGTTGGTTTACATTCAGCGAGTTTGAAGAGCCCGTAACACC 1137
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TGTAATCGATCAATATAACAGTTGGTTTACATTCAGCGAGTTTGAAGAGCCCGTAACACC 1212
Query 1138 ACGTTCTTGCCGACCTATACATGCCAGAGAACTTACAACGGTGAATGCTTTCAGAAGCAT 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GCGTTCTTGCCGACCTATACATGCCAGAGAACTTACAACGGTGAATGCTTTCAGAAGCAT 1272
Query 1198 GATGCATGAAGATATGATGGTGGGTGCATTCTCACATTCAACAGCAGTAGGAAAACTACG 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 GATGCATGAAGATATGATGGTGGGTGCATTCTCACATTCAACAGCAGTAGGAAAACTACG 1332
Query 1258 CAAAGACTTGCCAGATGTTCCAGTTGATGCTCGTCAGCAATTCCCACGTTATTCTTTGGA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CAAAGACTTGCCAGATGTTCCAGTTGATGCTCGTCAGCAATTCCCACGTTATTCTTTGGA 1392
Query 1318 TGAAGCAGAAGCTGTCTGCTATTACTACCTTCGGCAAAGACTAGTTCGGCGTGAAGTATT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 TGAAGCAGAAGCTGTCTGCTATTACTACCTTCGGCAAAGACTAGTTCGGCGTGAAGTATT 1452
Query 1378 CACCGAAGAAAACTGGAAGAAGATATACTATCTGGCAAATGGAAATGGAGCAGAGATGCG 1437
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CAACGAAGAAAACTGGAAGAAGATATACTATCTGGCAAATGGAAATGGAGCAGAGATGCG 1512
Query 1438 TTGGTTAGTCCCCTT-CATGCGTTGAGGAACAAACACACAAACAAACAAAATAGATTGTG 1496
|||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1513 TTGGTTAG-CCCCTTTCATGCGTTGAGGAACAAT-ATACAAACAAACAAAATAGATTGTG 1570
Query 1497 ATTTTGATTACTTTAATGTCGCCTTTTCTGGTGTTTTAAGTTATCCCGTTAGTTTGGGAG 1556
|| |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 ATCTTGATT--T-----GTCGCCTTTTCTGGTGTTTTAAGTTATCCCGTTAGTTTGGGAG 1623
Query 1557 GGAAACTCTTTTCATTGACCTTTCTGAATTAAAAGGAAGAtttttgttgtttgagtttat 1616
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1624 AGAAACTCTTTTCATTGACCTTTCTGAATTAAA-GGAAGATTTTTGTTGTTTGAGTTTGT 1682
Query 1617 agttttaggttt--ttgttgtctgtaaaacactggtttttgGACCTAAATTTCTTTCTAA 1674
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 AGTTTTAGGTTTCCTTGTTGTCTGTAAAACACTGGTTTTTGGACCTAAATTTCTTTCTAA 1742
Query 1675 TAAAATCAGTGCCTCTCATTTATCATC 1701
||||||||||||||||||||||| |||
Sbjct 1743 TAAAATCAGTGCCTCTCATTTATTATC 1769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84085912875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5