BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471888
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16880.1 | Symbols: | uridylyltransferase-related | chr1:57... 1801 0.0
> AT1G16880.1 | Symbols: | uridylyltransferase-related | chr1:5773592-5776308
FORWARD LENGTH=1260
Length=1260
Score = 1801 bits (975), Expect = 0.0
Identities = 1101/1160 (95%), Gaps = 16/1160 (1%)
Strand=Plus/Plus
Query 49 Ctttttt-tt-ttttCTCATGGCGGATAACACGAGACCTGTCCAAAGG--C-TCTTCTTC 103
||||||| || | |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 78 CTTTTTTATTATCCTCTCATGGCGGATAACACGAGACCTGTCCAAAGGCTCTTCTTCTTC 137
Query 104 TTC-T--T--C-ACTACTAGTCCTCTCTAACGTTTTCCTCATTCTTCTTAATTCCGATAT 157
||| | | | ||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 138 TTCGTCATCACTACTACTACTCCTCTCTAACGTTTTCCTCATTCTTCTTAATTCCGATTT 197
Query 158 TTGAGTTATGGCTATGGCGTCTGCTTCTGGTTCTGCTCTTTGCTTCACTGATGCTTCTAG 217
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TTGAGTGATGGCTATGGCCTCTGCTTCTGGTTCTGCTCTTTGCTTCACTGATGCTTCTAG 257
Query 218 CTCTCTAGCTTTAAGACGCGATTGTGGAGCTCTTTGCTTGCCTCCTAGGACAATTACGTT 277
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 258 CTCTCTTGCTTTAAGACGCGATTGTGGAGCTCTTTGCTTGCCTCCTAGGACAGTTACGTT 317
Query 278 TGGATTTGTCGATAAATCTCTT-TCCAATCTCGAGCGATTAAGATTATCCAGTTTGAAGC 336
|||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||
Sbjct 318 TGGATTTGTCGATAAACCTCTTGT-CAATCTCGAGCGATTAAGATTATCCACTTTGAAGA 376
Query 337 CTCGAGCATCAAATGCTACTGCTGTCGAGAATGGAAAGCAAGGTGAAAGTGCCGCTGATT 396
| |||||||||||||||||||||| |||||||||||||||| | |||||| |||||||
Sbjct 377 TTAGAGCATCAAATGCTACTGCTGTGGAGAATGGAAAGCAAGAAGGAAGTGCTGCTGATT 436
Query 397 CTGATAAAGTTCCAACTCCAGTTGTTATAATCGACCAAGATTCTGACCCTGATGCTACCG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 437 CTGATAAAGTTCCAACTCCAGTTGTTATAATCGACCAAGATTCTGACCCTGATGCAACCG 496
Query 457 TTCTTGAAGTTACATTTGGAGATCGTCTTGGAGCTTTACTTGACACTATGAATGCGCTCA 516
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TTCTTGAAGTTACATTCGGAGATCGTCTTGGAGCTTTACTTGACACTATGAATGCGCTCA 556
Query 517 AAAACTTGGGATTGAATGTTGTCAAGGCAAATGTTTACCTCGATTCTTCCGGCAAGCACA 576
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 557 AAAACTTGGGATTGAATGTCGTCAAGGCAAATGTTTACCTTGATTCTTCCGGCAAGCACA 616
Query 577 ACAAATTTGCCATTACTAAAGCGGATAGTGGAAGAAAAGTAGAAGACCCTGAATTGCTTG 636
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 617 ACAAATTTGCCATTACTAGAGCAGATAGTGGAAGAAAAGTAGAAGACCCTGAATTGCTTG 676
Query 637 AGGCCATTCGTCTCACAGTCATAAACAATCTGCTTGAGTTTCATCCTGAATCAAGTTCTC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 AGGCCATTCGTCTCACAGTCATAAACAATCTGCTTGAGTTTCATCCTGAATCAAGTTCTC 736
Query 697 AATTGGCAATGGGAGCAGCTTTTGGTGTTCTTCCTCCAACTGAACTGATTGATGTGGACA 756
| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 737 AGTTGGCAATGGGAGCAGCTTTTGGTGTTCTTCCTCCAACTGAACCGATTGACGTGGACA 796
Query 757 TAGCAACACATATAACCATTGAAGATGATGGACCAAACCGCAGTTTACTCTACATAGAAA 816
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 797 TAGCAACACATATAACCATTGAAGATGATGGACCAGACCGCAGTTTACTCTTCATAGAAT 856
Query 817 CAGCGGATAGACCTGGACTATTAGTTGAGCTGGTGAAGATCATTTCAGATATCAGCGTCG 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CAGCGGATAGACCTGGACTATTAGTTGAGCTGGTGAAGATCATTTCAGATATCAGCGTCG 916
Query 877 CTGTTGAATCTGGAGAATTCGACACCGAGGGTTTGTTGGCTAAGGTAAAGTTCCATGTAA 936
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 917 CTGTTGAATCTGGAGAATTCGACACCGAGGGTTTGTTGGCTAAGGTGAAGTTTCATGTAA 976
Query 937 GCTACAGGAACAAAGCACTAATCAAGCCTCTCCAGCAGGTTCTTGCTAATAGTCTGAGGT 996
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 977 GCTACAGGAACAAAGCCCTAATCAAGCCTCTCCAGCAGGTCCTTGCTAATAGTCTGAGGT 1036
Query 997 ACTTCTTGAGGCGTCCATCAACTGACGAGTCAAGTTTCTGATGATGCCCATTTTTCAAAA 1056
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1037 ACTTCTTGAGGCGTCCATCAACTGACGAGTCAAGTTTCTGATTATGCCCATTTTTCAAAA 1096
Query 1057 TCTGAAGTCCCATTCCTCGTGACTACT-TTTT-ACCACGtttttttttttttACATTTGA 1114
||| ||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 1097 TCTCAAGTCTCATTCCTCGTGACTACTATTTTTACCACTTTTTTTTTTTTTTACATTTGA 1156
Query 1115 CCAAAATAAGCTGTGTTCATACACCTGTAATAGTAATATTCTCCATCATTCATCAAATTT 1174
||||||||||||| ||||||||||||||||||||| ||| | ||||||||||| |||||
Sbjct 1157 CCAAAATAAGCTGC-TTCATACACCTGTAATAGTAACATTATGCATCATTCATCCAATTT 1215
Query 1175 ACTTTGATTCACAACCTGTG 1194
||||||||||||||||||||
Sbjct 1216 ACTTTGATTCACAACCTGTG 1235
Score = 100 bits (54), Expect = 3e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 AGAGAAATGGCGATCTAACGTTGAAGATAATAAGAAGGACGAAACGGACttttttttttt 60
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1 AGAGAAATGGCGATCTAACGTTGAAGATAATAAGAAGGACGAAACGGGCATTTTTTTTTT 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5