BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471892
Length=2016
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16900.1 | Symbols: | Alg9-like mannosyltransferase family ... 3125 0.0
> AT1G16900.1 | Symbols: | Alg9-like mannosyltransferase family
| chr1:5779021-5782433 REVERSE LENGTH=2084
Length=2084
Score = 3125 bits (1692), Expect = 0.0
Identities = 1897/1993 (95%), Gaps = 25/1993 (1%)
Strand=Plus/Plus
Query 34 CACGACCTCCATTTTCGTACTGA-AATCATCTAAGCTCGATGGATCTAACGACGACGCGT 92
|||||||||||||||||| |||| | || |||||||||||||||||||||||||||||||
Sbjct 93 CACGACCTCCATTTTCGTGCTGAGATTC-TCTAAGCTCGATGGATCTAACGACGACGCGT 151
Query 93 CAGAGGCGTCCACTTATATCTGACTCTTCTTCTTCGTCTTCCACGAAATCTTACTCGAAG 152
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 152 CAGAGGCGTCCACTTATATCTGACTCTTCTTCTTCGTCTTCTACGAAATCTTACTCGAAG 211
Query 153 ACCGATAAGCCTGGCCGACCTAACGGCAGG-GATGCGGAGGATGGTGGTCTCCGGTGGTT 211
|||||||| ||||||||| |||| ||| || ||||||||||||||||||||||| |||||
Sbjct 212 ACCGATAAACCTGGCCGATCTAATGGC-GGTGATGCGGAGGATGGTGGTCTCCGATGGTT 270
Query 212 CTTGCCGTTTATGGCGCTTTGTTATCTTCGTTACATGAGCGCGACTTCTAACATCATTCA 271
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 271 CTTGCCGTTTATAGCGCTTTGTTATCTTCGTTACATGAGCGCGACTTCTAATATCATTCA 330
Query 272 TGACTGCGATGAAGTGTTCAATTACTGGGAGCCTCTTCATTATCTTCTCTACAAGTCCGG 331
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 331 TGACTGCGATGAAGTGTTCAATTACTGGGAGCCTCTTCATTATATTCTCTACAAGTCCGG 390
Query 332 ATTTCAGACCTGGGAATACAGTTCCAACTTTGCTCTTCGGTCGTACTTATACATCCTTTT 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 391 ATTTCAGACCTGGGAATACAGTTCCAACTTTGCTCTTCGGTCGTACTTATACATTCTATT 450
Query 392 CCATGAATTGGCTGGACGGCCTGCTTCTTGGTGGTTCGGTGATGACAAGGTTAGAGTTTT 451
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 451 CCATGAATTGGCTGGACGGCCTGCTTCTTGGTGGTTTGGTGATGACAAGGTTAGAGTTTT 510
Query 452 CTATGCTGTGAGACTCTTTCTCGGACTGGTTTCTGCAGTTTCAGACACTGTCCTGGTTAT 511
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 511 CTATGCAGTGAGACTCTTTCTCGGACTGGTTTCTGCAGTTTCAGATACTGTCCTGGTTGT 570
Query 512 TGCGCTTTCCAGAAAGTACGGCAAACGTCTTGCTACATATGCAGTTGCGATGCTCTGCTT 571
|||||| ||||||||||| || |||||| | ||||| |||||||||||||||||||||||
Sbjct 571 TGCGCTCTCCAGAAAGTATGGGAAACGTATCGCTACCTATGCAGTTGCGATGCTCTGCTT 630
Query 572 AACCAGTGGCTGCTTCTTTGCTAGCACCAGTTTCCTCCCCAGTTCATTTTCTATGTACGC 631
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 631 AACCAGTGGCTGCTTCTTTGCTAGTACCAGTTTCCTCCCCAGTTCATTTTCTATGTACGC 690
Query 632 CATAAGCCTCTCATCTGGTTTATTACTTTTCGAGAAGTATGCCATGGCTGTTGCAGTTTC 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CATAAGCCTCTCATCTGGTTTATTACTTTTCGAGAAGTATGCCATGGCTGTTGCAGTTTC 750
Query 692 GGTTGTCGGGGTGATTCTTGGCTGGCCATTTTCTATCTTGGCCTTTTTACCTGTTGTTAT 751
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 751 GGTTGTCGGGGTGATTCTTGGCTGGCCATTTTCTATCTTGGCCTTTTTACCTGTCGTTAT 810
Query 752 TTACTCTCTGGTTAAGAGATTCAAGCAAGCATTTATCTCTGGCGCTGTCACTTCTCT-TT 810
||||||||||||||||||||||||||||||||||||| |||| || ||||| || | ||
Sbjct 811 TTACTCTCTGGTTAAGAGATTCAAGCAAGCATTTATCGCTGGTGCAGTCACCACTATATT 870
Query 811 TCCTC-TTAGGAGTCTCACTACTTGTGGATTACTATTATTATAAGAGATGGACATCATCG 869
|| || || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 871 TC-TCCTT-GGAGTCTCACTACTTGTGGATTACTATTATTACAAGAGATGGACATCATCA 928
Query 870 GTTTTGAATCTCTTGATATACAATGTGTTAGGGGGTGGAGAGAGCCATCTCTATGGGACT 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 GTTTTGAATCTCTTGATATACAATGTGTTAGGGGGTGGAGAGAGCCATCTCTATGGGACT 988
Query 930 GAAGGAGCACTT-TTTTATATAAGAAATGGATTTAACAACTTCAACTTCTGTTTCATTTT 988
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 GAAGGAGCG-TTATTTTATATAAGAAATGGATTTAACAACTTCAACTTCTGTTTCATTTT 1047
Query 989 GGCCATGTTGTTTGTCGCAATATATCCTGTTATCAGAAGAAAGTATGACCGTGGCCTGCT 1048
||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1048 GGCAATGTTGTTTGTCGCAATATATCCTGTTATCAGAAGGAAGTATGACCGTGCCCTGCT 1107
Query 1049 GGTTGTGATTTCGCCGATGTATATTTGGCTGGCATTCATGTCACTTCAGCCCCACAAAGA 1108
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1108 GGTTGTGATTTCCCCGATGTATATTTGGCTGGCGTTCATGTCACTTCAGCCCCACAAAGA 1167
Query 1109 AGAAAGGTTCCTTTATCCTATATACCCTCTTATATGTGTCTCTGCTTCTGCTGTTATTGA 1168
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1168 AGAAAGGTTCCTTTATCCTATATACCCTCTTATTTGTGTCTCTGCTTCTGCTGTTATTGA 1227
Query 1169 GAACATCCCTGAGCTGTTCCGGGAAAAGTATAGCTCACGTGAAAGTCTTCTGGTGACAAT 1228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 GAACATCCCTGAGCTGTTCCGGGAAAAGTATAGCTCACGTGAAAGTCTTCTGGTGACAAT 1287
Query 1229 AACCAAATACATGCGACCTGTGATTCTTGGTTTTATCTTATGTGCTTCACATTCTCGCAC 1288
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1288 AACCAAATACATGCGACCTGTGATTCTTGGTTGTATCTTATGTGCTTCACATTCTCGCAC 1347
Query 1289 ATTTGCTCTTATTAATGGCTATTCCGCTCCCTTAGAGGTCTACAAACTACTAGAGCACCA 1348
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 1348 ATTTGCTCTTATTAATGGCTATTCCGCTCCCTTGGAGGTCTACAAACTACTGGAGCATCA 1407
Query 1349 TGATGATGCAGGACCAGGTTCTGTTCTATGTGTGGGAAGTGAATGGCATCGATACCCATC 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 TGATGATGCAGGACCAGGTTCTGTTCTATGTGTGGGAAGTGAATGGCATCGATACCCATC 1467
Query 1409 ATCGTTTTTTGTGCCTGACTACATCAGCGAAGTACGGTGGATCGATGATGGATTCCGCGG 1468
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1468 ATCGTTTTTTGTGCCCCACTACATTAGCGAAGTACGGTGGATCGATGATGGATTCCGCGG 1527
Query 1469 TCTTCTTCCATTCCCATTTAACAGTACACTTGGAGGCACTGCAGCAGCACCTGCATACTT 1528
||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||||
Sbjct 1528 TCTTCTTCCATTCCCATTTAACAATACACTTGGAGGCACTTCAGCATCACCTCCATACTT 1587
Query 1529 CAACAACAAGAACCAAGCATCTGAAGAACAATATTTAAAGAACATCGAAACTTGTACATT 1588
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1588 CAACAACAAGAACCAAGCATCCGAAGAACAATATTTAAAGAACATCGAAACTTGTACATT 1647
Query 1589 CCTCATTGAGTTGCAGCTTAGCAGACCGTATCAATATCGAGGCAGCGACTTATCTACGTG 1648
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1648 CCTCATTGAGTTGCAGCTTAGCAGACCGTATCAGTATCGAGGCAGCGACTTATCTACATG 1707
Query 1649 GGAGGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTTTCGCCAGCTAAGTATAGATC 1708
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1708 GGAGGCTATTGCGGTGTTGCCTTATTTGGACAGAGAGCTGTCGCCAGCTAAGTATAGATC 1767
Query 1709 GTTCTTCATCCCGTACATGTGGCAGGAGAAAAACGTGTTTGGCAAATACGTAGCACTTAG 1768
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1768 GTTCTTCATCCCGCACATGTGGCAGGAGAAAAATGTGTTTGGCAAATACGTAGCACTGAG 1827
Query 1769 AAGAGTCCCAAAATGATCACAAATCCTTAAGACTCTCT-AGACTTGTAGCTTTAACTCAG 1827
||||||||||||||||||||||||| |||| |||| || |||||||||||||||||||||
Sbjct 1828 AAGAGTCCCAAAATGATCACAAATCGTTAAAACTC-CTTAGACTTGTAGCTTTAACTCAG 1886
Query 1828 TTCATTGGGCAGTTTTGAGCGGAATGTAATAACTAATAACTGATTAGTATCGGCTTTTAA 1887
||||||||| ||||||| | | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1887 TTCATTGGGTAGTTTTGGGAG-AATGTAATAACTAATAACTGATTAGTATCGGCTTT-AA 1944
Query 1888 GTTCA----CGTTCACGGTTCGTAGTGGTAAAGTCGTTAAAGAGACTAGTTTTGACTTTG 1943
||||| ||||||||||||||||| || || || ||||||||||||||| ||||||
Sbjct 1945 GTTCAGGTACGTTCACGGTTCGTAGTTGTGTTGTTGTGAAAGAGACTAGTTTTAACTTTG 2004
Query 1944 TAAGAAATCTCCAAATGGCAACTGGTCAGAAGAACGTGAAAGATTATGTTGATGACATTA 2003
|||||||||||||||||| | |||||||||||| ||||||||||| |||||||||
Sbjct 2005 TAAGAAATCTCCAAATGG----T---CAGAAGAACGTGGAAGATTATGTTTATGACATTA 2057
Query 2004 TTGTGCAAAGTCT 2016
|||||||||||||
Sbjct 2058 TTGTGCAAAGTCT 2070
Score = 65.8 bits (35), Expect = 2e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1 TTTTCTTCATTGCTTCGTCGAGAAGAGAATGAACA 35
|||||||||||||||||||||||||||||||||||
Sbjct 23 TTTTCTTCATTGCTTCGTCGAGAAGAGAATGAACA 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99899084550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5