BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471893
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16905.1 | Symbols: | Curculin-like (mannose-binding) lecti... 2023 0.0
> AT1G16905.1 | Symbols: | Curculin-like (mannose-binding) lectin
family protein | chr1:5782455-5783840 REVERSE LENGTH=1386
Length=1386
Score = 2023 bits (1095), Expect = 0.0
Identities = 1285/1377 (93%), Gaps = 12/1377 (1%)
Strand=Plus/Plus
Query 1 GTTTCTATCAAGACCTTG--AAAATGGCATTAGCATCACATAttcttattcttctttctc 58
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTCTATCAAGACCTTGAAAAAATGGCATTAGCATCACATATTCTTATTCTTCTTTCTC 60
Query 59 tttttcttctCATCTCGCTCGCCCGACCACAAGTTCCTTCATTGGAGCAATTCCGGTTCC 118
|||||||||| || || |||| |||||||||||||||| || ||||||||||||||||||
Sbjct 61 TTTTTCTTCTGATTTCCCTCGTCCGACCACAAGTTCCTCCAATGGAGCAATTCCGGTTCC 120
Query 119 TTAACAACGGCGACTTTGGAGAGTCCACGGTGGATTACGGTGCAAGTTACAGAGATTTAG 178
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 121 TTAACAACGGCGACTTTGGAGAATCCACGGTGGAGTACGGTGCAAGTTACAGAGATTTAG 180
Query 179 GTGTAATACGTAACCAGTTTCGTCTATGTTTCTTCAACACCACGCCAAACGCATTCACAC 238
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGTAATACGTAACCAATTTCGTCTATGTTTCTTCAACACCACGCCAAACGCATTCACAC 240
Query 239 TCGCTATTGGGATGGGAACAGGAAGTTCTGATTCCATCATTCGTTGGGTTTGGCAAGCTA 298
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 TCGCTATCGGGATGGGGACAGGAAGTTCTGATTCAATCATTCGTTGGGTTTGGCAAGCTA 300
Query 299 ACCCTCAAAATCCGGTTCAAGAAGAAGCTTCTCTTTCGTTCGGACCTGAAGGAAACCTTG 358
|||| ||||| || ||||||||||| |||||||||||||| ||||| || ||||||||||
Sbjct 301 ACCCACAAAAACCAGTTCAAGAAGAGGCTTCTCTTTCGTTTGGACCGGAGGGAAACCTTG 360
Query 359 TCCTGGCCCAGCCAGATGGCACAGTCGTATGGCAGACCATGACAGAAAACAAAGGTGTTA 418
|||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 361 TCCTCGCCCAGCCAGATGGCAGAGTCGTATGGCAGACCATGACAGAAAATAAAGGTGTTA 420
Query 419 TAGGCTTAACGATGAACGAAAACGGAAATCTTGTGTTGTTTGATGATGGAGGGTGGCCCG 478
||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 421 TAGGCTTGACCATGAACGAAAATGGAAATCTTGTGTTGTTTGATGATGGAGGATGGCCCG 480
Query 479 TATGGCAGAGCTTTGATTTCCCGACGGATACACTCTTGGTCGGCCAGTCTCTT-ACACTC 537
| |||||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||
Sbjct 481 TGTGGCAGAGCTTTGAATTCCCAACGGATACACTCTTGGTCGGTCAGTCT-TTAACACTC 539
Query 538 GATGGGTCGAAGAACAAACTCGTAAGTCGCAACAATGGGGCTTTTAGTCTTATCTTAGAG 597
||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 540 GATGGGTCGAAGAACAAGCTCGTAAGCCGCAACAATGGGTCTTATAGTCTTATCTTAGAG 599
Query 598 CCCGACCGACTCGTTCTAAACCATTTAGTCCCTCGGAGCAACAACAAATCCGTTGTGTAT 657
|||||||||||||||||||||| |||| ||||||| ||||||||||||||| ||||||||
Sbjct 600 CCCGACCGACTCGTTCTAAACCGTTTAATCCCTCGTAGCAACAACAAATCCCTTGTGTAT 659
Query 658 TACGTTATAGAAGGTCGGTTTATTCCAAGCGCCACTCTTTACGCGGCTAAAGACCAGGGG 717
|| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 660 CACATTATAGAGGGTCGGTTTATTCCAAGCGCCACTCTATACTCGGCTAAAGACCAAGGG 719
Query 718 ACCACGACTCAATTGGGCCTATCCACGCCGGGGCTTAGGCCTGAGTTTCCGTATAAACAT 777
||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 720 ACCACGACTCAATTGGGCCTAGCCACGCCGGGGCTCAGGCCTGAGTTTCCATATAAACAT 779
Query 778 TTCCTCGCAAGGCCTAGATTCAACGCCTCGCAAAGTTTCCTCAGGCTTGACGCTGATGGA 837
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 780 TTTCTCGCAAGGCCTAGATTCAACGCCTCACAAAGTTTCCTTAGGCTCGACGCTGATGGA 839
Query 838 AATCTTAGGATTTACACTTTCGATTTCAAGGTCACTTTTCTTGCATGGGAAGTAACATTC 897
||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 840 AATCTTAGGATTTACTCTTTCGATTCCAAGGTCACGTTTCTTGCATGGGAAGTAACGTTC 899
Query 898 GAGCTTTTCAACCACGACAACAACAACGAGTGTTGTTGGTTACCGTCCAAGTGTGGAGAG 957
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
Sbjct 900 GAGCTTTTCAACCACGACAACAACAACGA--G-TGTTGGTTACCGTCCAAGTGTGGAGCG 956
Query 958 TTTGGGCTTTGTGAGGATAATCAATGTGTGGCTTGTCCGTT-GGAGATGGGCTTACTGGG 1016
|||||| |||||||||| ||||||||||||||||||||||| |||| |||||||| ||||
Sbjct 957 TTTGGGATTTGTGAGGACAATCAATGTGTGGCTTGTCCGTTGGGAG-TGGGCTTAATGGG 1015
Query 1017 CTGGAGTAAGGCTTGTAAGCCTAAGAAGGTGAAGAGTTGTGATCCGAAGACTTTTCATTA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1016 CTGGAGTAAGGCTTGTAAGCCTAAGAAGGTGAAGAGTTGTGATCCGAAGAGTTTTCATTA 1075
Query 1077 TTATAGACTTGGAGGTGTTGACCATTTCATGACTAAGTATAACGTTGGTCTTGCGCTTGG 1136
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TTATAGACTTGGAGGTGTTGAGCATTTCATGACTAAGTATAACGTTGGTCTTGCGCTTGG 1135
Query 1137 AGAGAGCAAATGTCGAAGTTTGTGTAGTCGAGACTGTAAATGCTTGGGGTATTTTTACGA 1196
||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 1136 AGAGAGCAAGTGTCGGGGTTTGTGTAGTGGAGACTGTAAATGTTTGGGGTATTTTTTCGA 1195
Query 1197 TAAAAGTAGCTTTAAGTGTTGGATT-GCTCATGAGCTTGGAACTTTAGTCAAAGTTTCTG 1255
||||||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||
Sbjct 1196 TAAAAGTAGCTTTAAGTGTTGGATTAGTT-ATGAGCTTGGGACTTTAGTCAAAGTGTCTG 1254
Query 1256 ATTCCAGAAAAGTGGCTTATATCAAAACCCCTAATGTTTGATCTTTAAACGTGTAGAAAA 1315
|||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||
Sbjct 1255 ATTCCAGAAAAGTGGCTTATATCAAAACTCCTAATGTGTGATCAGTAA-CGTGTAGAAAA 1313
Query 1316 GACGAAAAACATAATGGGCTTAAAGTGCTAAGAAGCCCATTAAATGTACAACTTAAT 1372
| | |||||||||||||||||||||| |||| |||||||||| |||||| |||||||
Sbjct 1314 GGCAAAAAACATAATGGGCTTAAAGTACTAATAAGCCCATTATATGTACGACTTAAT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5