BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471894
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16920.1 | Symbols: RAB11, ATRABA1B, RABA1b | RAB GTPase hom... 1210 0.0
AT1G07410.1 | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b | R... 165 6e-40
AT1G05810.1 | Symbols: ARA, ARA-1, ATRAB11D, ATRABA5E, RABA5E |... 76.8 3e-13
> AT1G16920.1 | Symbols: RAB11, ATRABA1B, RABA1b | RAB GTPase homolog
A1B | chr1:5787330-5789249 REVERSE LENGTH=912
Length=912
Score = 1210 bits (655), Expect = 0.0
Identities = 733/771 (95%), Gaps = 3/771 (0%)
Strand=Plus/Plus
Query 1 AAATCTCAGTTTACACCTTTACACTGCTGCGtctctctctctctctctctTTCTATTTCT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1 AAATCTCAGTTTACACCTTCACACTGCTGCGTCTCTCTCTCTCTCTCTCTTTC--TTTCT 58
Query 61 CAGATTAATCGCTGAGAAGAAGCAACCACCT-GAGACGGCGGAGATGGCTGGGTACAGAG 119
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 59 CAGATTAATCGCTGAGAAGAAGCAACCACCTGGAGACGGCGGAGATGGCAGGGTACAGAG 118
Query 120 TGGAAGATGACTACGATTACCTCTTCAAAGTTGTTCTTATAGGCGATTCTGGAGTCGGCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 TGGAAGATGACTACGATTACCTCTTCAAAGTTGTTCTTATAGGCGATTCTGGAGTTGGCA 178
Query 180 AATCCAATCTCCTTTCCAGATTCACCAAAAACGAGTTCAACCTCGAGTCTAAATCCACCA 239
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 179 AATCCAATCTCCTTTCCAGATTCACTAAAAACGAGTTCAATCTAGAGTCTAAATCCACCA 238
Query 240 TTGGCGTCGAATTCGCCACTCGCACATTAAAAGTCGATGGTAAAGTCATCAAAGCTCAGA 299
|||||||||||||||||||||| || |||||||||||||| |||||| | ||||||||||
Sbjct 239 TTGGCGTCGAATTCGCCACTCGTACCTTAAAAGTCGATGGCAAAGTCGTTAAAGCTCAGA 298
Query 300 TTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACCAGTGCATACTATCGTGGAG 359
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 299 TTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACTAGTGCATATTACCGTGGAG 358
Query 360 CTGTGGGCGCACTCCTAGTATATGATGTAACCCGCCGTGCAACATTTGAGAACGTAGACC 419
| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 359 CCGTGGGTGCACTCCTAGTATATGATGTAACTCGCCGTGCAACATTTGAGAACGTAGATC 418
Query 420 GGTGGTTAAAGGAGCTCAAGAACCACACAGATCCAAACATTGTAGTGATGCTCGTTGGTA 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 GGTGGTTAAAGGAGCTCAAGAACCACACAGATCCAAACATTGTAGTGATGCTGGTTGGTA 478
Query 480 ACAAATCTGATCTCCGCCACTTACTAGCTGTTCCTACAGAAGATGGAAAATCCTACGCTG 539
|||||||||||||||||||||| |||||||||||||||||||| || || ||||| || |
Sbjct 479 ACAAATCTGATCTCCGCCACTTGCTAGCTGTTCCTACAGAAGACGGGAAGTCCTATGCGG 538
Query 540 AGCAAGAATCACTCTGCTTCATGGAAACATCTGCCCTTGAAGCTACCAATGTCGAGGACG 599
| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 539 AACAAGAATCGCTCTGCTTCATGGAAACATCTGCCCTTGAAGCTACCAATGTGGAGGACG 598
Query 600 CATTTGCAGAGGTTTTGACACAGATTTATCGCATCACAAGCAAGAAGCAAGTTGAAGCTG 659
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 599 CATTTGCAGAGGTGTTGACACAAATTTATCGCATCACAAGCAAGAAGCAAGTGGAAGCTG 658
Query 660 GTGAAGATGGGAATGCCTCTGTCCCGAAAGGTGAGAAAATCGAAGTTAAAAACGATGTCT 719
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTGAAGATGGGAACGCCTCTGTCCCGAAAGGTGAGAAAATCGAAGTTAAAAACGATGTCT 718
Query 720 CTGCTCTGAAGAAACTCGGGTGCTGCTCAAATTGAAGGCtttttttttttt 770
|||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 719 CTGCGCTGAAGAAACTCGGGTGCTGCTCAAATTGAAGCCTTTTTTTGTTTT 769
> AT1G07410.1 | Symbols: ATRABA2B, RAB-A2B, ATRAB-A2B, RABA2b |
RAB GTPase homolog A2B | chr1:2276053-2277154 FORWARD LENGTH=755
Length=755
Score = 165 bits (89), Expect = 6e-40
Identities = 212/271 (78%), Gaps = 10/271 (4%)
Strand=Plus/Plus
Query 126 ATGACTACGATTACCTCTTCAAAG-TTGTTCTTATAGGCGATTCTGGAGTCGGCAAATCC 184
|||| ||||||||| | ||| ||| | || || || |||||||| || || || ||||||
Sbjct 130 ATGAGTACGATTACTTGTTC-AAGATCGTCCTGATCGGCGATTCCGGTGTTGGTAAATCC 188
Query 185 AATC-TCCTTTC-CAGATTCACCAAAAACGAGTTCAACCTCGAGTCTAAATCCACCATTG 242
|| | | || || | ||||||||| |||||||||| ||||| || |||||||||||||
Sbjct 189 AA-CATTCTCTCTC-GATTCACCAGAAACGAGTTCTGTCTCGAATCCAAATCCACCATTG 246
Query 243 GCGTCGAATTCGCCACTCGCACATTAAAAGTCGATGGTAAAGTCA-TCAAAGCTCAGATT 301
|||||||||||||||| || || ||| | || || || ||| || | || |||||||||
Sbjct 247 GCGTCGAATTCGCCACCCGGACTTTACAGGTTGAAGGCAAAA-CAGTGAAGGCTCAGATT 305
Query 302 TGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATCACCAGTGCATACTATC-GTGGAGC 360
||||||||||| ||||| ||| | || || || ||||| ||||| ||||| | | |||||
Sbjct 306 TGGGACACTGCAGGTCAAGAGCGTTATCGAGCAATCACAAGTGCTTACTA-CAGAGGAGC 364
Query 361 TGTGGGCGCACTCCTAGTATATGATGTAACC 391
||| || || || || || || || |||||
Sbjct 365 TGTTGGAGCTCTTCTTGTCTACGACATAACC 395
> AT1G05810.1 | Symbols: ARA, ARA-1, ATRAB11D, ATRABA5E, RABA5E
| RAB GTPase homolog A5E | chr1:1748314-1749460 FORWARD LENGTH=896
Length=896
Score = 76.8 bits (41), Expect = 3e-13
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 278 GGTAAAGTCATCAAAGCTCAGATTTGGGACACTGCTGGTCAGGAGAGGTACCGTGCCATC 337
||||||| |||| |||||||||||||||||||||||||||||| | | ||||||| ||
Sbjct 301 GGTAAAGAGGTCAAGGCTCAGATTTGGGACACTGCTGGTCAGGAGCGTTTCCGTGCCGTC 360
Query 338 ACCAGTGCATACTATCGTGGAGCTGTGGGCGCACTCCTAGTATATGATGTAACCCGCCG 396
|| || || || ||||| ||||| || || ||| | || || || | ||||||||
Sbjct 361 ACTTCCGCTTATTACCGTGGCGCTGTCGGTGCCCTCGTCGTTTACGACATTACCCGCCG 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5