BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471898
Length=2257
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16970.1 | Symbols: KU70, ATKU70 | KU70 homolog | chr1:58007... 3260 0.0
> AT1G16970.1 | Symbols: KU70, ATKU70 | KU70 homolog | chr1:5800767-5805799
REVERSE LENGTH=2333
Length=2333
Score = 3260 bits (1765), Expect = 0.0
Identities = 2024/2142 (94%), Gaps = 45/2142 (2%)
Strand=Plus/Plus
Query 43 GTTCTTGTCAGGAGATGGAATTGGACCCAGATGATGTTTTCAGAGATGAAGACGAAGACC 102
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GTTCTTGTTAGAAGATGGAATTGGACCCAGATGATGTTTTCAGAGATGAAGACGAAGACC 121
Query 103 CAGAAAGCGAATTCTTTCAGGAAAAAGAGCCTTCCAAGGAATTTGTAGTCTATCTAATTG 162
|||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 122 CAGAAAACGATTTCTTTCAGGAAAAAGAGGCTTCCAAAGAATTTGTAGTCTATCTAATTG 181
Query 163 ATGCTTCTCCCAAAATGTTCAGCTCTACTTGCCCTTCTGAGGAAGAGGACAAACAAGAAA 222
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 182 ATGCTTCTCCCAAAATGTTCTGCTCTACTTGCCCCTCTGAGGAAGAGGACAAACAAGAAA 241
Query 223 GTCATTTTCATATTGCTGTTAGTTGCATTGCTCAGTCGCTCAAGTCTCATATTATCAATC 282
|||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 242 GTCATTTTCACATTGCTGTTAGTTGCATTGCTCAGTCACTCAAGGCTCATATTATCAATC 301
Query 283 GGTCAAATGATGAAATAGCGATATGCTTCTTTAACACTCGTGAAAAGAAGAATCTTCAGG 342
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 302 GGTCAAATGATGAAATAGCTATATGTTTCTTTAACACTCGTGAAAAGAAGAATCTTCAGG 361
Query 343 ATCTCAATGGTGTCTATGTCTTTAATGTTCTAGAGAGAGATTGTATTGACCGCCCAACAG 402
|||| |||||||| |||||||||||||||| |||||| ||| |||||||||| |||||||
Sbjct 362 ATCTAAATGGTGTTTATGTCTTTAATGTTCCAGAGAGGGATAGTATTGACCGTCCAACAG 421
Query 403 CGAGGCTGATTAAAGAATTCGATCTCATAGAAGAATCATTTGATAAGGATATTGGCAGTC 462
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 422 CGAGGCTGATTAAAGAATTCGATCTCATAGAAGAATCATTTGATAAGGAAATTGGCAGTC 481
Query 463 AAACTGGTATTGTCTCAGATTCTCGGGAGAATTCCCTTTATAGTGCTCTCTGGGTTGCAC 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AAACTGGTATTGTCTCAGATTCTCGGGAGAATTCCCTTTATAGTGCTCTCTGGGTTGCAC 541
Query 523 AAGCACTACTGCGCAAAGGATCTTCAAAGACAGCAGATAAGCGCATGTTTCTGTTCACTA 582
|||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||
Sbjct 542 AAGCACTACTGCGCAAAGGATCTTTAAAGACAGCAGATAAACGCATGTTTCTATTCACTA 601
Query 583 ATGAAGATGATCCTTTTGGGAATATGAGGATCTCTGTAAAAGAGGATATGACGAGGACGA 642
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 602 ATGAAGATGATCCTTTTGGGAGTATGAGGATCTCTGTTAAAGAGGATATGACGAGGACGA 661
Query 643 CATTGCAGAGAGCTAAGGATGATTTACAAGACCTTGGCATTTCAATTGAGCTTCTTCCCC 702
| ||||||||||||||||||| ||||||||||||||| ||||| |||||||| || |
Sbjct 662 CGTTGCAGAGAGCTAAGGATG---CACAAGACCTTGGCATCTCAATCGAGCTTCTACCAC 718
Query 703 TCAGTCAACCTGATAAGCAATTCAATATAACTCTCTTCTACAAGGTTAATTTAATTGGAT 762
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 719 TCAGTCAACCTGATAAGCAATTCAATATAACTCTCTTCTACAAGG---ATCTAATTGGAT 775
Query 763 TAAACAGTGATGAACTTACGGAGTTCATGCCATCAGTTGCACAGAAATTAGAGGACATGA 822
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 776 TAAACAGTGATGAACTTACGGAGTTCATGCCATCAGTTGGACAGAAATTAGAGGACATGA 835
Query 823 AGGACCAGCTGAAGAAGCGTGTACTTGCCAAGAGAATAGCAAAAAGAATTACGTTTGTGA 882
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGGACCAACTGAAGAAGCGTGTACTTGCCAAGAGAATAGCAAAAAGAATTACGTTTGTGA 895
Query 883 TCTGTGATGGTTTGTCTATTGAACTGAATGGTTATGCGTTACTCCGTCCGGCTATTCCTG 942
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 896 TCTGTGATGGCTTGTCTATTGAACTGAATGGTTATGCTTTACTCCGTCCGGCTATTCCTG 955
Query 943 GCAGCATAACCTGGCTTGACTCTACAACTAATCTTCCTGTGAAGGTGGAAAGATCATATA 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GCAGCATAACCTGGCTTGACTCTACAACTAATCTTCCTGTGAAGGTGGAAAGATCATATA 1015
Query 1003 TCTGTACGGACACTGGAGCGATAATGCAAGATCCTATACAACGGATTCAGCCTTACAAAA 1062
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TCTGTACGGACACTGGAGCTATAATGCAAGATCCTATACAACGGATTCAGCCTTACAAAA 1075
Query 1063 ATCAGAATATCATGTTTACTGTGGAAGAGCTATCCCAAGTAAAAAGAATCTCAACTGGAC 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ATCAGAATATCATGTTTACTGTGGAAGAGCTATCCCAAGTAAAAAGAATCTCAACTGGAC 1135
Query 1123 ACTTAAGACTGCTGGGGTTCAAGCCACTTAGTTGCCTCAAAGATTATCACAATTTGAAGC 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 ACTTAAGACTGCTGGGGTTCAAGCCACTTAGTTGCCTCAAAGATTATCACAATTTGAAGC 1195
Query 1183 CTTCTACATTTCTCTATCCAAGTGATAAGGAAGTTATAGGGAGCACTCGTGCATTCATTG 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CTTCTACATTTCTCTATCCAAGTGATAAGGAAGTTATAGGGAGCACTCGTGCATTCATTG 1255
Query 1243 CCTTGCATAGATCCATGATACAGCTTGAACGTTTTGCTGTTGCATTTTATGGCGGCACTA 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 CCTTGCATAGATCCATGATACAGCTTGAACGTTTTGCTGTTGCATTTTATGGCGGTACTA 1315
Query 1303 CACCTCCGAGATTGGTTGCACTTGTTGCTCAGGATGAAATCGAGAGTGATGGTGGTCAAG 1362
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CACCTCCGAGATTGGTTGCTCTTGTTGCTCAGGATGAAATCGAGAGTGATGGTGGTCAAG 1375
Query 1363 TGGAGCCACCAGGGATGAACATGATATATCTTCCATATGCTAATGATATTAGAGATATCG 1422
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TGGAGCCACCAGGGATAAACATGATATATCTTCCATATGCTAATGATATTAGAGATATCG 1435
Query 1423 ACGAGTTGCACTCAAAACCTGGTGTAGCTGCTCCTCGCGCATCAGAGGATCAGCTTAAAA 1482
|||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1436 ACGAGTTGCATTCAAAACCAGGTGTAGCTGCTCCTCGCGCATCAGATGATCAGCTTAAAA 1495
Query 1483 AAGCATCAGCTCTAATGCGACGTCTGGAGTTAAAAGACTTTTCCGTTTGCCAATTTGCTA 1542
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1496 AAGCATCAGCTCTAATGCGACGTCTAGAGTTAAAAGACTTTTCGGTTTGCCAATTTGCTA 1555
Query 1543 ATCCCGCTTTGCAGAGACACTATGCTATCTTACAAGCCATTGCACTCGATGAAAACGAGA 1602
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1556 ATCCCGCTTTGCAGAGACACTATGCTATCTTACAAGCCATTGCACTGGATGAAAACGAGC 1615
Query 1603 TTAGTGAAACCAGAGATGAAACGCTTCCTGACGAAGAAGGAATGAACAGACCTGCAGTTG 1662
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1616 TTCGTGAAACCAGAGATGAAACACTTCCTGACGAAGAAGGAATGAACAGACCTGCAGTTG 1675
Query 1663 TAAAAGCAATAGAA-AATTTTAAGCAGTCGATTTACGGCGATGACCCTGATGAAGAAAGT 1721
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1676 TAAAAGCAATAGAACAATTT-AAGCAGTCGATTTATGGCGATGACCCTGATGAAGAAAGT 1734
Query 1722 GACTCAGGGGCAAAGGAGAAATCAAGAAAGCGAAAAGCTGGTAATGCGGATGATGGAAAA 1781
||||||||||||||||||||||||| |||||||||||| ||| | || ||||||||||||
Sbjct 1735 GACTCAGGGGCAAAGGAGAAATCAAAAAAGCGAAAAGCCGGTGACGCAGATGATGGAAAA 1794
Query 1782 TACGACTATATAGAGCTTGCAAAAACCGGAAAGCTGAAGGACTTGACTGTGGTCGAACTG 1841
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TATGACTATATAGAGCTTGCAAAAACCGGAAAGCTGAAGGACTTGACTGTGGTCGAACTG 1854
Query 1842 AAGACATATCTGACTGCCAACAATCTTCCCC-TCGGCGGGAAGAAAGAAGTTTTGATCAA 1900
|||||||||||||||||||||||||| || | || ||||||||||||||||| |||||||
Sbjct 1855 AAGACATATCTGACTGCCAACAATCT-CCTCGTCAGCGGGAAGAAAGAAGTTCTGATCAA 1913
Query 1901 TCGGATTCTGACTCACGTTGGTAAATAACATTATTAACCGTGACTTATA-A-CTCCTGCT 1958
|||||||||||||||| |||||||||||| || | |||||||| ||||| | ||||||||
Sbjct 1914 TCGGATTCTGACTCACATTGGTAAATAAC-TT-T-AACCGTGAGTTATATAACTCCTGCT 1970
Query 1959 AGAGAAGCTACGTTTTAGTTTCCGTTATCGAAAAGCTTGTCGGTTTTTGATGGGAACTGG 2018
||||||||||||||||||||| | || |||||||||||| ||||||||||||||||||
Sbjct 1971 AGAGAAGCTACGTTTTAGTTT---T-ATTGAAAAGCTTGTCTGTTTTTGATGGGAACTGG 2026
Query 2019 ACCCAGTTATCTTCCGGTTCATTGTTCAACGTTTTGCCTCACCTACAAAGG-T------- 2070
||||| ||||||||||| |||||||||| |||||||||||| ||||||||| |
Sbjct 2027 ACCCATTTATCTTCCGGGTCATTGTTCATCGTTTTGCCTCAGCTACAAAGGGTTTTAGAT 2086
Query 2071 ----CT--------CT-TTT-GGGTAACCACTAATTTGTTATCTTTGTTCTAACTTTATG 2116
|| || ||| |||||| ||||||||||| ||||| | ||||||||||||
Sbjct 2087 TTAACTGTAATGGTCTCTTTTGGGTAATCACTAATTTGTGATCTTGGCTCTAACTTTATG 2146
Query 2117 GTGGAGTTTATAGTTT-ACGAAATCCATAACAGT-CTTTATA 2156
|||||||||||| ||| ||||| ||||||| || |||||||
Sbjct 2147 GTGGAGTTTATA-TTTGACGAATTCCATAAG-GTTCTTTATA 2186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111997415895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5