BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471904
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17060.1 | Symbols: CYP72C1, SOB7 | cytochrome p450 72c1 | c... 2704 0.0
> AT1G17060.1 | Symbols: CYP72C1, SOB7 | cytochrome p450 72c1 |
chr1:5832097-5835456 REVERSE LENGTH=1817
Length=1817
Score = 2704 bits (1464), Expect = 0.0
Identities = 1694/1799 (94%), Gaps = 39/1799 (2%)
Strand=Plus/Plus
Query 1 TTTTATCACATTTCTTTTCTACAGTAtttttttttttttttCTATTCACGCATATATATA 60
|||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 19 TTTTATCACATTTCTTTTCTACAGTA---------TTTTCTCTATTCACGCATATATATA 69
Query 61 GATATACAGCTGCCTCCAACATATATAGTCAACTGATGAAATTATAAGCATCATCATTAT 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GATATCCAGCTGCCTCCAACATATATAGTCAACTGATGAAATTATAAGCATCATCATTAT 129
Query 121 AGTTTTGTCTCCtttttttCTT-TTC----C-TTTACTTTCTAGCTCCTCCCTTCTTCAT 174
|||||||||||||||||||||| ||| | ||| |||||||||| ||| |||||||||
Sbjct 130 AGTTTTGTCTCCTTTTTTTCTTCTTCTTTTCTTTTTCTTTCTAGCTACTCTCTTCTTCAT 189
Query 175 AGATAGATCAAGATGATGGAGATTAATATAGTAAGAAAAGTGTTCTTGATCGGATTCTTG 234
|| |||||||||||| | ||||| | || ||||||||||||||||||||||||||||||
Sbjct 190 AGCTAGATCAAGATGTTAGAGATCATTACGGTAAGAAAAGTGTTCTTGATCGGATTCTTG 249
Query 235 ATCTTGATTCTGAATTGGGTATGGAGAGCTGTGAATTGGGTTTGGTTAAGGCCAAAGAGA 294
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATCTTGATACTGAATTGGGTATGGAGAGCTGTGAATTGGGTTTGGTTAAGGCCAAAGAGA 309
Query 295 CTAGAGAAATATCTGAAGAAACAAGGATTTTCTGGGAATTCTTATAGGATTTTGATGGGA 354
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 310 CTGGAGAAATATCTGAAGAAACAAGGATTCTCTGGGAATTCTTATAGAATTTTAATGGGA 369
Query 355 GATATGAGAGAGAGTAATCAGATGGATCAAGTTGCTCACTCTCTTCCTCTTCCTCTCGAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GATATGAGAGAGAGTAATCAGATGGATCAAGTTGCTCACTCTCTTCCTCTTCCTCTCGAC 429
Query 415 GCCGATTTTCTCCCTCGCATGATGCCTTTTCTCCACCACACTGTTCTAAAACATGGGAAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GCCGATTTTCTCCCTCGCATGATGCCTTTTCTCCACCACACTGTTCTAAAACATGGGAAG 489
Query 475 AAGTGTTTCACATGGTACGGACCGTACCCGAACGTGATAGTAATGGATCCAGAGACACTA 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AAGTGTTTCACATGGTACGGACCGTACCCGAACGTGATAGTAATGGATCCAGAGACACTC 549
Query 535 CGAGAGATTATGTCAAAACACGAACTCTTTCCGAAACCAAAGATTGGGTCACATAATCAT 594
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 550 CGAGAGATTATGTCAAAACACGAACTCTTTCCAAAACCAAAGATCGGGTCACATAATCAT 609
Query 595 GTTTTTCTCAGTGGTCTTCTCAATCACGAAGGTCCTAAATGGTCCAAGCATCGAAGCATT 654
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GTTTTCCTAAGTGGTCTTCTCAATCACGAAGGTCCTAAATGGTCCAAGCATCGAAGCATT 669
Query 655 CTTAATCCTGCTTTTCGTATCGATAATTTGAAGAGCATACTACCAGCATTCAACTCGAGT 714
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 670 CTTAATCCTGCTTTTCGTATTGATAATTTGAAGAGCATACTACCAGCATTTAACTCGAGT 729
Query 715 TGCAAAGAGATGTTAGAAGAATGGGAGAAATTAGCTTCAGCAAAAGGAACAGTGGAACTT 774
|||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 730 TGCAAAGAAATGTTAGAAGAATGGGAGAGATTAGCCTCAGCAAAAGGAACAATGGAACTT 789
Query 775 GATTCATGGACTCACTGTCATGACTTAACCAGAAACATGCTTGCTCGTGCTTCTTTTGGT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GATTCATGGACTCACTGTCATGACTTAACCAGAAACATGCTTGCTCGTGCTTCTTTTGGT 849
Query 835 GATTCCTACAAAGATGGTATCAAGATCTTCGAAATCCAACAAGAGCAGATCGATCTTGGT 894
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 850 GATTCCTACAAAGATGGTATCAAGATCTTCGAAATCCAACAAGAACAGATTGATCTTGGT 909
Query 895 CTCCTCGCTATTCG-----T----------G-C-CA---TTTTTGCCAACAAAGTTCAAC 934
||||| |||||||| | | | || |||||||||||||||||||||
Sbjct 910 CTCCTTGCTATTCGAGCCGTCTACATTCCTGGCTCAAAGTTTTTGCCAACAAAGTTCAAC 969
Query 935 AGGAGGTTGAGAGATTC-GAAAGGGACATGAGGGCTATGTTTAAAGCTATGATTGTGACT 993
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 970 AGGAGGTTGAGAGAAACCGAAAGGGACATGAGGGCTATGTTTAAAGCGATGATTGAGACA 1029
Query 994 AAAGAGGAGGAGATAAAAAGAGGAAGAGCTGGTCAAAATGTCACTTCTTCATTGTTTGTT 1053
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1030 AAAGAGGAGGAGATAAAAAGAGGAAGAGCTGGTCAAAATGTGACTTCTTCATTGTTTGTT 1089
Query 1054 TGGACACTTGTTGCTCTAAGCCAACATCAAGATTGGCAAAACAAAGCAAGAGACGAGGTT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1090 TGGACACTTGTTGCTCTAAGCCAACATCAAGATTGGCAAAACAAAGCAAGAGACGAGATT 1149
Query 1114 TCTCAGGCCTTCGGTAACAACGAGCCAGATTTCGAAGGGTTAAGCCACCTGAAAGTTGTA 1173
||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||
Sbjct 1150 TCTCAGGCCTTCGGTAACAACGAACCCGATTTCGAAGGGCTAAGCCACCTGAAAGTCGTA 1209
Query 1174 ACAATGATCCTCCATGAAGTTCTAAGGCTCTATTCACCAGCTTACTTCACATGTCGGATA 1233
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1210 ACAATGATCCTCCATGAAGTTCTACGACTCTATTCACCAGCTTACTTCACATGTCGGATA 1269
Query 1234 ACTAAACAAGAAGTGAAGTTAGAGAGATTCTCTTTACCCGAAGGAGTTGTGGTCACAATA 1293
|||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1270 ACTAAACAAGAAGTGAAGCTAGAGAGATTCTCTTTACCTGAAGGAGTTGTAGTAACAATA 1329
Query 1294 CCAATGCTCTTGGTGCACCATGATCCTGACCTTTGGGGAGACGATGTGAAACAGTTTAAG 1353
|||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 1330 CCAATGCTCTTGGTGCACCATGATTCTGATCTTTGGGGAGACGATGTGAAAGAGTTTAAG 1389
Query 1354 CCCGAGAGATTCGTTAATGGCGTGGCGGGTGCAACCAAAGGAAGACTCTCCTTCTTGCCA 1413
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CCCGAGAGATTCGCCAATGGCGTGGCGGGTGCAACCAAAGGAAGACTCTCCTTCTTGCCA 1449
Query 1414 TTTAGCTCGGGCCCTCGGACTTGTATCGGTCAAAACTTTTCCATGTTGCAAGCTAAACTC 1473
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1450 TTTAGCTCGGGCCCTCGGACTTGTATCGGTCAGAACTTTTCGATGTTGCAAGCTAAACTC 1509
Query 1474 TTCTTGGCAATGGTACTTCAAAGGTTCAGTGTAGAGCTCTCTCCATCGTATACTCATGCT 1533
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1510 TTCTTGGCAATGGTACTTCAAAGGTTCAGTGTTGAACTCTCTCCATCGTATACTCATGCT 1569
Query 1534 CCTTTCCCAGCTGCAACTACATTTCCACAACATGGAGCTCATTTGATCATCCGAAAAGTT 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1570 CCTTTCCCAGCTGCAACTACATTTCCACAACATGGAGCTCATTTGATCATCCGAAAACTG 1629
Query 1594 TAGGAGGTAGAAGAA-GAAGAAAAAA-TGTAAAGGTGCTTCCTTTCTTTTTTGTTCATCA 1651
||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1630 TAGGAGGTAGAAGAATGAGGAAAAAAATGTAAAGGTGCTTCCTTT-TTTTTTGTTCATCA 1688
Query 1652 ACAAAACAGAACCTTGAAGGTGTCTAGTGGTAAATGCAGTTTGAATCCTGTCAAGAAATC 1711
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1689 ACAAAACAGAACCTTGAAGGTGTGTAGTGGTAAATGCAGTTTGAATCCGGTCAAGAAATC 1748
Query 1712 TTATTTGGGTGTTTTTGTATATAAGAAACAGATTCAAATCTATAAATTTCATAAGATTT 1770
||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||
Sbjct 1749 TTATTTGGGTGTTTTTGTATATATGAAACAAATTAAAATCTAGAAATTTCATAAGATTT 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87549750480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5