BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471908
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17100.1 | Symbols: | SOUL heme-binding family protein | ch... 1279 0.0
> AT1G17100.1 | Symbols: | SOUL heme-binding family protein |
chr1:5844676-5845661 FORWARD LENGTH=911
Length=911
Score = 1279 bits (692), Expect = 0.0
Identities = 856/930 (92%), Gaps = 31/930 (3%)
Strand=Plus/Plus
Query 1 ACCACACATTCAGACGTAA-GAATAATCTATATTACCAGTAAAAGGCCGCGTAAACAACG 59
|||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 1 ACCACACATTCACACGTAACAAATAATCTATATTACCGGTAAAAGGCCGCGTAAAC-A-- 57
Query 60 AAGACAGAAGTAAAAGGCACCTATACTTAGAAAAAACCGCCATGGCCACAGGTTTAAGCT 119
|||| |||||| || | | ||| |||| ||||||||||||||||| |||||| |||
Sbjct 58 AAGAAAGAAGT--AA-G---C--TACCTAGATAAAACCGCCATGGCCACCGGTTTAGGCT 109
Query 120 TCTTTAAGCTCTCTTTCCTCCTCAGCCTCCTCTCCGGCGGATCAGACCTATTAGGTCCCG 179
||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 110 TCTTTAAGCTCTCCTTCCTCCTTAGCCTCCTCTCCGGTGGATCAGACCTATTAGGTCCCG 169
Query 180 AAGCCGAATCCGGAGTCGCCCAAATCGGGAAGTTCCCGCCGTCGTGTAACCGAATCGAAT 239
| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 170 ATGCCGAATCCGGAGTCGCCCAAATTGGGAAGTTCCCGCCGTCGTGTAACAGAATCGAAT 229
Query 240 GCCCGAGCTACGAGCTGGTTCACTCTGGAAATGGATACGAAATTCGCCGGTACAACAGCA 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 230 GCCCGAGCTACGAGCTGGTTCACTCCGGAAATGGATACGAAATTCGCCGGTACAACAACA 289
Query 300 CCGTCTGGGTTTCCACTGAACCGATTCCAGATATCTCGCTCGTTGATGCTACAAGAACCG 359
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 290 CCGTCTGGGTTTCCACTGAACCGATTCCAGATATCTCTCTCGTTGATGCTACCAGAACCG 349
Query 360 CTTTTTTCCAATTGTTTGCATACATTCAGGGGAAGAACGAGTATCATCAGAAGATAGAAA 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CTTTCTTCCAATTGTTTGCATACATTCAGGGGAAGAACGAGTATCATCAGAAGATAGAAA 409
Query 420 TGACTGCTCCGGTCATCTCTCAGGTCTCTCCAAGCGATGGTCCCTTCTGTGAATCTTCCT 479
||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||
Sbjct 410 TGACTGCTCCGGTTATCTCTCAAGTCTCACCAAGCGACGGTCCATTCTGTGAATCTTCCT 469
Query 480 TCACTGTATCCTTCTACGTTCCCAAAAAGAACCAGCCTGATCCAGCTCCGGCGGAAAATC 539
|||||||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 470 TCACTGTATCATTCTACGTTCCTAAAAAGAACCAGCCTGATCCAGCTCCGTCGGAGAATC 529
Query 540 TCCACATCCAGAAATGGAACCCTAGGTACGTGGCCGTGAGACAATTCAGCGGATTCGTCT 599
||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 530 TCCACATTCAGAAATGGAACTCTAGGTACGTGGCCGTGAGACAATTCAGTGGATTCGTGT 589
Query 600 CCGATGATAGCATTGGAGAAGAAGCGGCGGCGCTAGACTCGACCCTCAAAGGTACGCCTT 659
| ||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 590 CTGATGATAGCATAGGAGAACAAGCGGCGGCGCTAGACTCGAGCCTCAAAGGTACGGCTT 649
Query 660 GGGCTAATGCAATAGAGAAAAGCAAAGAAGACGGTGGTGTTGGGTCGGATTCAGCTTACA 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GGGCTAATGCAATAGCGAAAAGCAAAGAAGACGGTGGTGTTGGGTCGGATTCAGCTTACA 709
Query 720 CGGTGGCTCAGTATAACTCACCCTTCGAGTTCTCCGGTCGGGTCAATGAGATTTGGTTAC 779
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CGGTCGCTCAGTATAACTCACCCTTCGAGTTCTCCGGTCGGGTCAATGAGATTTGGTTAC 769
Query 780 CGTTCGAGCTCGATGTTTA-G-T--G---A---A-CCCTTTTTATATACACTTGAATAAA 828
||||||||||||||||||| | | | | | |||||||| |||||| |||||||||
Sbjct 770 CGTTCGAGCTCGATGTTTAAGCTCTGCTTAGTGAACCCTTTTTCTATACATTTGAATAAA 829
Query 829 ACAAAGAGGTTAATCTGTAAAGTGCAAACCTTTTTTCCGATACAAATTTATGCAGAAACA 888
| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 830 ATAA-GAGGTTAATCTGTAAAGTGCAAACCTTTTTTCTGATACAAATTT-TGCAGAAACA 887
Query 889 GGGGAGGGAATTTTTGATGAAATGAGATTG 918
||||| | ||| |||||||||||||||
Sbjct 888 GGGGA---A-TTT--GATGAAATGAGATTG 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5