BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471910
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17120.1 | Symbols: CAT8 | cationic amino acid transporter 8... 2970 0.0
> AT1G17120.1 | Symbols: CAT8 | cationic amino acid transporter
8 | chr1:5851953-5853955 FORWARD LENGTH=2003
Length=2003
Score = 2970 bits (1608), Expect = 0.0
Identities = 1776/1858 (96%), Gaps = 7/1858 (0%)
Strand=Plus/Plus
Query 1 CCTGCTTCAATGGAGGAAGCTCACCAGCAGGAGTCGAGATCCGATGACCTAAGTCAACGG 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 18 CCTGCTTCAATGGAGGAAGCTCACCAGCTGGAGTCGAGATCCGATGACCTAAGTCAACGG 77
Query 61 AGGAGCTACTGGAGATGGAGGAAGCAGGATTTTTTCCCGGAATTCTCTTTTCAGAGCTTC 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 AGAAGCTACTGGAGATGGAGGAAGCAGGATTTTTTCCCGGAATTCTCTTTTCAGAGCTTC 137
Query 121 TCTACCTACAAATCAGCTCTCTCCGCCACTTGTCCTCGCCTCGCAGATCGTCTTCTCTCG 180
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 138 TCTACCTACAAATCAGCTCTCTCCGCCACTTGTCCACGCCTCGCCGATCGTCTTCTCTCT 197
Query 181 CGTTCTTCCGACGCTTACGAGCTCGATGCAGCACGCCGCGAAAGCGAGAACCCTATGCGT 240
|| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 198 CGCTCTTCCGATGCGTACGAGCTCGATGCAGCCCGCCGCGAAAGCGAGAACCCTATGCGT 257
Query 241 CGTTGTCTCACGTGGTGGGACTTGCTCTGGCTTAGCTTTGGCTCTGTTGTTGGGTCTGGT 300
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 258 CGTTGTCTCACTTGGTGGGACTTGCTCTGGCTTAGCTTTGGTTCTGTTGTTGGTTCGGGT 317
Query 301 GTGTTCGTGATCACGGGTCAGGAGGCTCGAACTGGAGCCGGTCCTGCCGTTGTTCTCTCT 360
|||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||
Sbjct 318 GTGTTCGTGATCACGGGTCAGGAGGCTCGAGTTGGAGCTGGTCCTGCTGTTGTTCTCTCC 377
Query 361 TACGCTATCTCTGGTGTCTCTGCTTTGCTCTCAGTTCTCTGTTATGCTGAGTTTGGAGTT 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 378 TACGCTATCTCTGGTGTCTCTGCATTGCTCTCAGTTCTCTGTTATGCTGAGTTTGGAGTT 437
Query 421 GAGATTCCTGTCGCTGGAGGTTCTTTCTCTTATCTTAGGGTTGAATTGGGGGATTTTATT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 GAGATTCCTGTCGCTGGAGGTTCTTTCTCTTATCTTAGGGTTGAATTGGGGGATTTTATT 497
Query 481 GCCTTTATTGCTGCTGGGAATATTCTGCTTGAGGCTATGGTTGGTGCTGCTGGATTAGGG 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 498 GCCTTTATTGCTGCTGGGAATATTCTTCTTGAGGCTATGGTTGGTGCTGCTGGATTAGGG 557
Query 541 AGGTCATGGTCTTCGTATCTAGCTAGTTTGGTCAAGAATGATTCTGATTATTTTCGGATT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 AGGTCATGGTCTTCGTATCTAGCTAGTTTGGTCAAGAATGATTCTGATTATTTTCGGATT 617
Query 601 AAAGTCGATTCCTTTGCTAAAGGGTTTGATCTTTTGGATCCGGTTGCTGTTGCAGTGCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AAAGTCGATTCCTTTGCTAAAGGGTTTGATCTTTTGGATCCGGTTGCTGTTGCAGTGCTT 677
Query 661 TTAGTTGCTAATGGTATTGCCATGACTGGAACAAAGAGGACTTCTTGGTTGAATTTGATT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TTAGTTGCTAATGGTATTGCCATGACTGGAACAAAGAGGACTTCTTGGTTGAATTTGATT 737
Query 721 ACTTCCATGGTCACGGTTTGTATTATTGTGTTTATCGTCGTTGTGGGGTTTACTCATTCA 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 ACTTCCATGGTCACTGTTTGTATTATTGTGTTTATCGTCGTTGTGGGGTTTACTCATTCA 797
Query 781 AAAACCTCCAATTTGGTTCCTTTTTTCCCTTATGGAGCGAAAGGTGTGGTGCAATCTGCT 840
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AAAACCTCAAATTTGGTTCCTTTTTTCCCTTATGGAGCGAAAGGTGTGGTGCAATCTGCT 857
Query 841 GCAGTTGTCTACTGGTCATACACTGGGTTTGATATGGTGGCTAACATGGCTGAAGAAACC 900
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 858 GCAGTTGTCTACTGGTCATACACTGGTTTTGATATGGTGGCTAACATGGCTGAAGAAACC 917
Query 901 GAGAAACCTTCGAGAGATATACCAATTGGTTTGGTTGGTTCGATGTCTATGATCACCGTG 960
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 918 GAGAAACCTTCCAGAGATATTCCAATTGGTTTGGTTGGTTCGATGTCTATGATCACTGTG 977
Query 961 GTTTACTGTTTGATGGCTTTGGCGTTGACTATGATGGTAAAATACACTGAAATTGATGCG 1020
|||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 978 GTTTACTGTTTGATGGCTCTGGCCTTGACTATGATGGTGAAATACACTGAAATTGATGCG 1037
Query 1021 AATGCAGCTTATTCTGTTGCTTTTACACAGATTGGGATGAAATGGGCTAAGTACTTGGTT 1080
|||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 1038 AATGCAGCTTATTCTGTTGCTTTTGCTCAGATTGGGATGAAATGGGCGAAGTACTTGGTT 1097
Query 1081 GGTATATGCGCTTTAAAGGGCATGACCACAAGCCTGCTTGTTGGATCTCTTGGTCAAGCT 1140
|||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||
Sbjct 1098 GGTATATGCGCTTTAAAGGGAATGACCACAAGCCTGCTTGTTGGCTCTCTAGGCCAAGCT 1157
Query 1141 CGGTACACCACTCAGATTGCTCGGTCTCATATGATTCCTCCATGGTTTGCTTTGGTTCAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 CGGTACACCACTCAGATTGCTCGGTCTCATATGATTCCTCCATGGTTTGCTTTGGTTCAT 1217
Query 1201 CCCAAAACAGGAACCCCTATTAATGCTACTCTCCTTGTAACCATACTCAGCGCAATAATC 1260
|| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1218 CCAAAAACAGGAACCCCTATTTATGCTACTCTCCTTGTAACCATACTCAGTTCAATAATA 1277
Query 1261 TCCTTTTTCACCAGCTTAGATGTTCTATCAAGCGTTTTCTCCTTCGCCACCCTCTTCATT 1320
||||| |||||||||||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 1278 TCCTTCTTCACCAGCTTAGAGGTTTTATCAAGCGTTTTCTCCTTTGCTACCCTCTTCATT 1337
Query 1321 TTCATGCTCGTGGCAGTAGCATTGCTTGTGAGACGTTACTACGTGAAGGATGTGACTCCT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1338 TTCATGCTCGTGGCAGTAGCATTGCTTGTGAGACGTTACTACGTGAAGGATGTCACTCCT 1397
Query 1381 GAGACCGGTTTGTTGAAGTTTCTTGGTTTTCTGTTTTTGATCATTGCTTCTTCCATTGGA 1440
||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1398 GAGGCCGGTTTGTTGAAGTTTCTTGGTTTTCTGTTTTTGATAATTGCTTCCTCCATTGGA 1457
Query 1441 GTATCAGCG-TTATGGAA-TGCAGGCGTTGGAGGATGGATCGCTTATGCAGTGACCGGAG 1498
||||||||| || ||||| | |||||||| ||| ||||||||||| ||||||| ||||
Sbjct 1458 GTATCAGCGCTT-TGGAACT-CAGGCGTTAAAGGTTGGATCGCTTACACAGTGACTGGAG 1515
Query 1499 TT-TTATGGTTGATAGGCACTTTAGGATTGGCATTGCTTCCGAAATACCGTGTCCCTAAG 1557
|| || ||||| |||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 1516 TTATT-TGGTTTATAGGCACTTTAGGGTTGGCATTGCTTCCGAAATATCGTGTTCCTAAG 1574
Query 1558 GTTTGGGGAGTCCCGCTAGTTCCGTGGTTGCCATCGTTTTCAATCGCCATGAATCTTTTC 1617
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1575 GTATGGGGAGTCCCACTAGTTCCGTGGTTGCCATCGTTTTCAATCGCCATGAATCTATTC 1634
Query 1618 CTTATCGGATCACTCGGTTATGTAGCATTCTTGAGATTCATTATCTGCACCATGGTGATG 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 CTTATCGGATCACTCGGTTATGTAGCATTCTTGAGATTCATTATCTGCACCATGGTGATG 1694
Query 1678 CTTTTGTACTACCTATTCGTTGGTCTTCATGCAACCTATGATGTAGCTCATCAGCCACTG 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1695 CTTTTGTACTACCTATTCGTTGGTCTTCATGCAACCTATGATGTAGCTCATCAGCCTTTG 1754
Query 1738 GAGGAATCAAAGTTCGAGGGAGAGAGATAAAGAGAATCGATCGCAACACTTGACTACGGT 1797
|||||| ||||||| |||||||||||||||| ||||||||||| ||||||| |||||| |
Sbjct 1755 GAGGAAGCAAAGTTTGAGGGAGAGAGATAAA-AGAATCGATCGTAACACTTCACTACGTT 1813
Query 1798 TGGTAAATTGTATAAATTCCCATGttttcttatgtaatttcactattcttgtattaaa 1855
||||||||||||||||||||| |||||||| |||| |||||| ||||||| |||||||
Sbjct 1814 TGGTAAATTGTATAAATTCCCTTGTTTTCTGATGTGATTTCAATATTCTTCTATTAAA 1871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95330834955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5