BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471912
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17130.2 | Symbols: | Family of unknown function (DUF572) ... 1978 0.0
AT1G17140.1 | Symbols: ICR1, RIP1 | interactor of constitutive ... 152 8e-36
> AT1G17130.2 | Symbols: | Family of unknown function (DUF572)
| chr1:5854148-5856697 FORWARD LENGTH=1358
Length=1358
Score = 1978 bits (1071), Expect = 0.0
Identities = 1251/1334 (94%), Gaps = 28/1334 (2%)
Strand=Plus/Plus
Query 1 TAAAAACCAAAGCGTTAAAATCATTACGAGAAGAGAAATTTCCTTTTTCCTGTGATTTTG 60
||||| |||||||| |||||||| | || ||||||||||||| ||||||||||||||
Sbjct 19 TAAAATCCAAAGCG-TAAAATCA-T---AG-CGAGAAATTTCCTTATTCCTGTGATTTTG 72
Query 61 CT---CAGAAGAAG---CTCGAGGAGGAAGAAGAAACAGGCGACATGGGAGAACGGAAGG 114
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTGAGAAGAAGAAGAATCTCGAGGAGGAAGAAGAAACAGGCGACATGGGAGAACGGAAGG 132
Query 115 TGCTTAACAAGTATTATCCACCGGACTTCGATCCTTCGAAGCTTCAGCGGCTCCGGCGAC 174
|||| |||||||||||||| ||||||||||||||| |||||||||| ||||||||||| |
Sbjct 133 TGCTAAACAAGTATTATCCGCCGGACTTCGATCCTGCGAAGCTTCAACGGCTCCGGCGGC 192
Query 175 CGAAGAACCAGCAGATCAAGGTTCGTATGATGCTTCCGATGAGTGTCCGATGCAGTACCT 234
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 193 CGAAGAACCAGCAGATCAAGGTTCGTATGATGCTTCCAATGAGTGTCCGATGCGGTACCT 252
Query 235 GCGGAAACTATATCTACAAGGGAACCAAGTTCAATTCCCGTAAAGAAGACGTCATTGGCG 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GCGGAAACTATATCTACAAGGGAACCAAGTTCAATTCCCGTAAAGAAGACGTCATTGGCG 312
Query 295 AGAACTATTCTATCGATTTGCAGACGTATCTCGGGATTCAAATATTCAGATTCTACTTCA 354
|||||| |||| | ||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 313 AGAACTTTTCTTTTGATGTGCAGACGTATCTCGGGATTCAAATATTTAGATTCTACTTCA 372
Query 355 AGTGCACCAAGTGCTCTGCAGAGCTGACTATGAAGACGGATCCACAAAATTCTGATTACA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 AGTGCACCAAGTGCTCTGCAGAGCTGACTATGAAGACGGATCCACAAAATTCTGATTACA 432
Query 415 TTGTCGAATCTGGGGCATCTCGTAATTATGAACCCTGGCGTGCAGAAGATGAGGAGGTTG 474
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 433 TTGTCGAATCTGGGGCATCTCGAAATTATGAACCCTGGCGTGCAGAAGATGAGGAGGTTG 492
Query 475 ATAAAGATAAACAGAAAAGAGATGCTGAGGAGATGGGGGATGCGATGAAGTCCTTGGAGA 534
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 493 ATAAGGATAAACAGAAAAGAGATGCTGAGGAGATGGGGGACGCGATGAAGTCCTTGGAGA 552
Query 535 ACAGAACTTTGGATTCTAAAAGAGAAATGGACATTATAGCTGCACTTGATGAAATGAAAT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ACAGAACTTTGGATTCTAAAAGAGAAATGGACATTATAGCTGCACTTGATGAAATGAAAT 612
Query 595 CAATGAAGTCTAGACATGCTACTGTGAGTGTAGATGCAATGTTGGAGGCCTTGCAAAGAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CAATGAAGTCTAGACATGCTACTGTGAGTGTAGATGCAATGTTGGAGGCCTTGCAAAGAA 672
Query 655 CAGGCGCTGAGAAGGTAAAACGAATAGAAGAAGAAGATGAAGCAGTTATAAAGTCGATAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CAGGCGCTGAGAAGGTAAAACGAATAGAAGAAGAAGATGAAGCAGTTATAAAGTCGATAT 732
Query 715 TTGGTAAACAGAAAGAAGTTATTAGGAGAATTGCAGATGAAGAAATTGATGATGAT---G 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 733 TTGGTAAACAGAAAGAAGTTATTAGGAGAATTGCAGATGAAGAAATTGATGATGATTATG 792
Query 772 AT--T-ATGATAGCGACGATTCTCCCAACCTTCAGAAGGAGAAGAAAGGATCATCTTCAG 828
|| | |||||| ||| |||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 793 ATGATGATGATATCGATGATTATCCCAGCCTTCAGAAGGAGAAGAAAGGATCATCGTCAG 852
Query 829 ATCTTTCAAAGAAGAGAAAGGCATCAGAAGAAAGTCCAAGCAACCCCACAGATATTTTGA 888
|||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct 853 ATCTTTCAAAGAAGAGGAAGGCAACAGAAGTAAGTCCAAGCAACCCCACAGATATTTTGA 912
Query 889 CTAGTTCTTCTACGGAAAATCCAAAGGAGCCCAAGAAACGAGCTACCAGCAAACAACCCT 948
||||||||||| | |||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 913 CTAGTTCTTCTGCAGAAAATCCGAAGGAGCCCAAGAAACAAGCTATCAGCAAACAACCCT 972
Query 949 TCAAATCCGTTCACATAACAGTCATCAAGAAGCAATCTCAACCTACTTCTTCGACGACTC 1008
| |||||||||||||||| |||||||||||||||| ||||||| ||||| ||| | ||||
Sbjct 973 TTAAATCCGTTCACATAAAAGTCATCAAGAAGCAACCTCAACCAACTTCATCGTCAACTC 1032
Query 1009 CAGCTCCTGCAAAACCAGAGGAGAAGAAGGGTGGCGATGCGGCTAACACCAGTTTAGCAT 1068
| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
Sbjct 1033 CGGCTCCTGCAAAACCAGAGGAGAAGAAGAGTGATGGTGCGGCTAACACCAGTTTAGCCT 1092
Query 1069 CTTTATTCCAGAATTATGGTAGTGATGAAGACGAAGAGTGATTGTTTTTGTTCTCAACAA 1128
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1093 CTTTATTCCAGAATTATGGTAGTGATGAAGATGAAGATTGATTGTTTTTGTTCTCGACAA 1152
Query 1129 GTTCCGCACTTTCACAGATCTCATATCACTGTTTTAGAATTCTAGCCATCTTTGTACTGC 1188
|||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 1153 GTTCCGCACTTTCACAGATCTCATATCACTGTTTTAGAATTCGAGC--TCTTA-TACTG- 1208
Query 1189 TC-ATATACGTGACATCTTTCAGAATTTTCAAAAATTTGTTCATGAAATTGTTTTTGCAG 1247
|| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1209 TCGATATATGTGAGATCTTTCAGAATTTTCAGAAATTTGTTCATGAAATTGTTTTTGCAA 1268
Query 1248 TTGATTTGGATTGATAGTTAGCTTCTGATGAAGCGGA-----TTACAAAAACCTCCAGGT 1302
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1269 TTGATTTGGATTGATAGTTAGCTTCTGATGAAGCGGACCCACTTACAAAAACTTCCAGGT 1328
Query 1303 AAATACAGCAAAAT 1316
||||||||||||||
Sbjct 1329 AAATACAGCAAAAT 1342
> AT1G17140.1 | Symbols: ICR1, RIP1 | interactor of constitutive
active rops 1 | chr1:5856573-5858446 REVERSE LENGTH=1497
Length=1497
Score = 152 bits (82), Expect = 8e-36
Identities = 101/109 (93%), Gaps = 5/109 (5%)
Strand=Plus/Minus
Query 1213 TTTTCAAAAATTTGTTCATGAAATTGTTTTTGCAGTTGATTTGGATTGATAGTTAGCTTC 1272
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1497 TTTTCAGAAATTTGTTCATGAAATTGTTTTTGCAATTGATTTGGATTGATAGTTAGCTTC 1438
Query 1273 TGATGAAGCGGA-----TTACAAAAACCTCCAGGTAAATACAGCAAAAT 1316
|||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1437 TGATGAAGCGGACCCACTTACAAAAACTTCCAGGTAAATACAGCAAAAT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5