BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471915
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17145.1 | Symbols: | RING/U-box superfamily protein | chr1... 2008 0.0
AT1G78420.1 | Symbols: | RING/U-box superfamily protein | chr1... 399 3e-110
> AT1G17145.1 | Symbols: | RING/U-box superfamily protein | chr1:5860119-5862682
REVERSE LENGTH=1422
Length=1422
Score = 2008 bits (1087), Expect = 0.0
Identities = 1296/1393 (93%), Gaps = 29/1393 (2%)
Strand=Plus/Plus
Query 1 TTCGTATCCAACCAACTCCACCGTTTC--T-TTC-TTCTTCGTCGGATCTTTCGCTAAAC 56
||||||||| || |||||||||||||| | ||| |||||| ||||||||||| | |
Sbjct 1 TTCGTATCCGACTAACTCCACCGTTTCGTTCTTCGTTCTTCATCGGATCTTTC-TTCTTC 59
Query 57 AC-ACAACAACATTACTGTATCTCTCTCTCACAGAGGAAAAGTTGTCATCTTTGTCTTCT 115
|| || ||||||||||||||| ||||| || || |||||||||| | |||||||| ||||
Sbjct 60 ACGACGACAACATTACTGTATATCTCTTTCGCAAAGGAAAAGTTCTGATCTTTGTATTCT 119
Query 116 CTTACCGTTCGTTATCTAAGT-TGCTTCGATTCTTATC-AA-CGGTT--GGAATTTTAAA 170
|||| | |||||||||||||| | ||||||||| || || | || || | ||||||
Sbjct 120 CTTATCATTCGTTATCTAAGTCT-CTTCGATTC---TCGAAGCTTTTAAGGCA-TTTAAA 174
Query 171 GAGACGAAATGGGTAATAAGCTGGGAAGGAAGAGACAGATTGTGGACGAAAGATACACTA 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 175 GAGACGAAATGGGTAATAAGCTGGGAAGGAAGAGACAGATTGTGGACGAAAGATACACAA 234
Query 231 AGCCACAACAAGGTTTATACATGAGCAAAGATGTCGACATTAAAAAGCTTAAGAAACTCA 290
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 235 AGCCACAACAAGGTTTATACATGAGCAAAGATGTTGACATTAAAAAGCTTAAGAAACTCA 294
Query 291 TCTTAGACTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAA---CCTCCTCCCATC 347
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 295 TCTTAGAGTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCCCCTCCTCCCATC 354
Query 348 ATGATCTTGAGGAATGTCCTATTTGCTTTCTGTACTATCCGAGCCTTAATAGGTCAAGAT 407
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 355 ATGATCTTGAAGAATGTCCTATTTGCTTTCTGTATTATCCGAGTCTTAATAGGTCAAGAT 414
Query 408 GTTGTATGAAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTC 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTTGTATGAAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTC 474
Query 468 AACCTACTCAATGCCCGTTTTGCAAAACATCCAATTATGCTGTCGAGTATCGTGGAGGGA 527
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AACCTACTCAATGCCCTTTTTGCAAAACATCCAATTATGCTGTCGAGTATCGTGGAGGGA 534
Query 528 AAACTAAAGAGGAGAAGAGCATTGAACAAATTGAAGAGCAGCAAGTTATAGAAGCCAAAA 587
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 535 AAACTAAAGAGGAGAAGAGCTTTGAACAAATTGAAGAGCAGCGAGTTATAGAAGCCAAAA 594
Query 588 TAAGGATGAGGCAGAAGGAAGTTGAAGAAGATGAAGAAAGAATGCAGAAACGTCTGGAAT 647
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 595 TAAGGATGAGGCAGAAGGAAGTTGAAGATGATGAAGAAAGAATGCAGAAACGTCTGGAGT 654
Query 648 CGTTTTCTTCTAGTTCTAGCACTAGTGCAGCGACTCTTGATACAGAATATGGTTCTGCTG 707
| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 655 CATATTCTTCTAGTTCTAGCACTAGTGCAGCGACTCTTGATACAGAGTATGGTTCTGCTG 714
Query 708 CAGAGGACGATGAGGAAATTGTTTTATCTCAAGACTCATGTCTTCT-TC-CATCGCACCC 765
||||||| |||||||||||||||| ||||||||| |||||||||| || || | |||||
Sbjct 715 CAGAGGATGATGAGGAAATTGTTTCATCTCAAGAATCATGTCTTCCATCTCA-C-CACCC 772
Query 766 TCAGGTTACAAGGGACGGTCAGTTTGACTTTGATCTTGAAGATATAATGGTCATGGAAGC 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TCAGGTTACAAGGGACGGTCAGTTTGACTTTGATCTTGAAGATATAATGGTCATGGAAGC 832
Query 826 AATATGGCTCTCGATGCAGGAACCAGGAATTCAGAGAAACACATCACCTGATGATATTTC 885
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AATATGGCTTTCGATGCAGGAACCAGGAATTCAGAGAAACACATCACCTGATGATATTTC 892
Query 886 AGAAAAAGATCATAATGGGGAACCATCGACTCCGTCATCATCATCTCCATCAGGTGGGCT 945
||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 893 AGAAAAAGATCGTAATGAGGAACCATCAACTCCGTCATCATCATCTCCATCAGGTGGGCT 952
Query 946 AGCTTGTGCAATCGCTGTCCTTGCTGAACGCCAGCAAATGGTTGGCGAATCTTCCTCCAA 1005
|||||||||||| ||||| ||||| ||||| |||||||||||||||| |||||| || ||
Sbjct 953 AGCTTGTGCAATTGCTGTTCTTGCCGAACGTCAGCAAATGGTTGGCGTATCTTCTTCGAA 1012
Query 1006 TCAAAACGTTGACCTTGCATCACAAAACATGGTTCCAGACAATTGTAACAACAGTCATTA 1065
|||||||||| ||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1013 TCAAAACGTTAACCTTGCATCACAAAACCTTGTTCCAGACAATGGTAACAACAGTCATTA 1072
Query 1066 CAATGCCATAGAACAAGATAGTAACCATTACCTTCAAGGAGCAGGAATCAGCTATACAAG 1125
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CAATGCCATAGAACAGGATAGTAACCATTACCTTCAAGGAGCAGGAATCAGCTATACAAG 1132
Query 1126 ATCTGATATGTCTGATGATAGTGGCGGCGAGACTTCCAGGGAAGTTACATGGCAATAGAG 1185
||| |||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1133 ATCAGATATGACTGATGATAGCGGCGGTGAGACTTCCAGGGAAGTTACATGGCAATAGAG 1192
Query 1186 --TTCCCAAAGGTTAAAAAGGAAAGCTTCAAAGTTGTTATATAGTCTTT-GCTTATATTA 1242
||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1193 AGTTCCCAAAGGT-AAAGAGGAAAGCTTCAAAGTTGTTATATAGTCTTTTGTTTATATTA 1251
Query 1243 TGTTAGTGTGAGTGAATGGATTTTTAGATTGTTAGTTAGTTTTCAGGGTGTATGTTGATC 1302
|||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||||
Sbjct 1252 TGTTAGCGGGAGTGAATGG-TTTT-AGATTGTTAGTTAGTTTTGAGGGTGTATGTTGATC 1309
Query 1303 ATTTCATACATGTGCCAATAGGAAAAACCAAAACGATTTTCAGTTCCTTATACAGAAGGT 1362
| |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||
Sbjct 1310 ACTTCATACATGTGCCAATAAGAAAAACCAAAACGATTTTCAATTCCTCCTACAGAAGGT 1369
Query 1363 TGGTTGTTTGGTT 1375
|||||||||||||
Sbjct 1370 TGGTTGTTTGGTT 1382
> AT1G78420.1 | Symbols: | RING/U-box superfamily protein | chr1:29504533-29507486
FORWARD LENGTH=1923
Length=1923
Score = 399 bits (216), Expect = 3e-110
Identities = 402/489 (82%), Gaps = 23/489 (5%)
Strand=Plus/Plus
Query 179 ATGGGTAATAAGCTGGGAAGGAAGAGAC-AGATTGTGGACGAAAGATACACTAAGCCACA 237
|||||||||||| ||||||||||||| | || | ||||| ||||| || || ||| | |
Sbjct 504 ATGGGTAATAAGTTGGGAAGGAAGAGGCAAG-TGGTGGAAGAAAGGTATACAAAG-C-C- 559
Query 238 ACAAGGTTTATACATGAGCAAAGATGTCGACATTAAAAAGCTTAAG-AAACTCATCT-TA 295
|||||||| || ||| |||||||||||| ||||||||| | || ||||| || | |
Sbjct 560 TCAAGGTTTGTATGTGAATAAAGATGTCGACGTTAAAAAGC-TCAGAAAACTGAT-TGTG 617
Query 296 GACTCTAAGCTTGCTCCTTGTTATCCTGGTCTTGAAGAAACCTCCTCCCATCATGATCTT 355
|| ||||||||||||||||| |||||||| || |||| || ||||||||||
Sbjct 618 GAGTCTAAGCTTGCTCCTTGCTATCCTGGAGACGATGAAA---GCT---GTCATGATCTT 671
Query 356 GAGGAATGTCCTATTTGCTTTCTGTACTATCCGAGCCTTAATAGGTCAAGATGTTGTATG 415
|| |||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 672 GAAGAATGTCCAATTTGTTTTCTGTACTATCCTAGCCTCAATAGATCAAGATGTTGCATG 731
Query 416 AAAAGCATTTGTACAGAATGCTTTCTGCGGATGAAGAGTCCTAATTCAGCTCAACCTACT 475
||||||||||||||||| || ||| ||| ||||||| |||||||||||||| ||||||
Sbjct 732 AAAAGCATTTGTACAGAGTGTTTTTTGCAAATGAAGAATCCTAATTCAGCTCGGCCTACT 791
Query 476 CAATGCCCGTTTTGCAAAACAT-CCAATTATGCTGTCGAGTATCGTGGAGGGAAAACTAA 534
|| ||||| ||||| ||||| | |||| |||||||||||||||||||||| || | ||
Sbjct 792 CAGTGCCCTTTTTGTAAAAC-TCCCAACTATGCTGTCGAGTATCGTGGAGTCAAGTC-AA 849
Query 535 A-GAGGAGAAGAGCATTGAACAAATTGAAGAGCAGCAAGTTATAGAAGCCAAAATAAGGA 593
| ||||| ||| ||||||||||| |||||||||| | || |||||||||||||||||||
Sbjct 850 AGGAGGAAAAGGGCATTGAACAAGTTGAAGAGCAACGGGTAATAGAAGCCAAAATAAGGA 909
Query 594 TGAGGCAGAAGGAAGTTGAAGAA-GATGAAGA-AAGAATGCAGAAACGTCTGGAATCGTT 651
|||||||||| ||| | | || | |||||||| || ||||||||||||||| ||||| |
Sbjct 910 TGAGGCAGAAAGAAAT-GCAGGATGATGAAGAGAA-AATGCAGAAACGTCTTGAATCATG 967
Query 652 TTCTTCTAG 660
||| |||||
Sbjct 968 TTCCTCTAG 976
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67720535205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5