BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471916 Length=443 Score E Sequences producing significant alignments: (Bits) Value AT1G17147.1 | Symbols: | VQ motif-containing protein | chr1:58... 579 1e-164 > AT1G17147.1 | Symbols: | VQ motif-containing protein | chr1:5863431-5864009 REVERSE LENGTH=579 Length=579 Score = 579 bits (313), Expect = 1e-164 Identities = 403/446 (90%), Gaps = 8/446 (2%) Strand=Plus/Plus Query 3 CCAAAAGTATGTCTGCAGGAGTAAGATCTGAGCCGATGAAGGTCGTTTTCATTAACACAC 62 |||||| ||||||||||||||| |||||||| ||||||||||| || ||||||||||||| Sbjct 52 CCAAAAATATGTCTGCAGGAGTGAGATCTGAACCGATGAAGGTTGTCTTCATTAACACAC 111 Query 63 AGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAGTTGTTCAAGAACTCACCGGTAAAA 122 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 112 AGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAATTGTTCAAGAACTCACAGGTAAAA 171 Query 123 ACGCAGTCGTCGCCGACGGTCCTTTTGAATTCTCCGGCCAAGGCTACGGTGGAAAAGATT 182 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||||| Sbjct 172 ACGCAGTCGTCGCCGACGGTCCTTATGAATTCTCCGGTCAAGGGTACGGTGGCAAAGATT 231 Query 183 CATCACAGCGGTTTTGCAGCGTAGGAAAAGAAACAGAAGGAGGTGTAGAGACGACGGAGT 242 |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| Sbjct 232 CATCACAGCGGTTTTGTGGCGTAGGAAAAGAAGCAGAAAGAGGTGTAGAGACGACGGAGT 291 Query 243 TCGATAGTGTTTTCAGGGAGATGCCTCCGGTCGGCGAATTGCATAATCTTTGGTCAGACA 302 |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 292 TCGATAGTTTTTTCAGAGAGATGCCTCCGGTCGGCGAATTGTATAATCTTTGGTCAGACC 351 Query 303 ATTGACTGGAGTGATAATTAGTT-TTTATTTAATTCCTTT--TATTAAGGCCCATTGGGT 359 ||||||| || | |||||| ||| ||| ||| |||| |||||||||||||||||| Sbjct 352 ATTGACTAGACTAATAATTCGTTCTTT-TTT--TTCCCACAATATTAAGGCCCATTGGGT 408 Query 360 TTAATCTTATTATCTCAGGCCTTTGTAAAACACGAGTGATCCTAAGAATGTGAACTTCTT 419 ||||| ||||||||||| |||| ||| |||||||| || |||| |||| ||||||||||| Sbjct 409 TTAATATTATTATCTCAAGCCTATGTGAAACACGAATGTTCCTTAGAAGGTGAACTTCTT 468 Query 420 TTTTG--GCTTAATGCATTAATGTAT 443 |||| ||||||||||||||||||| Sbjct 469 TTTTTTTGCTTAATGCATTAATGTAT 494 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21062186831 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5