BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471916

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17147.1 | Symbols:  | VQ motif-containing protein | chr1:58...   579    1e-164


> AT1G17147.1 | Symbols:  | VQ motif-containing protein | chr1:5863431-5864009 
REVERSE LENGTH=579
Length=579

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 403/446 (90%), Gaps = 8/446 (2%)
 Strand=Plus/Plus

Query  3    CCAAAAGTATGTCTGCAGGAGTAAGATCTGAGCCGATGAAGGTCGTTTTCATTAACACAC  62
            |||||| ||||||||||||||| |||||||| ||||||||||| || |||||||||||||
Sbjct  52   CCAAAAATATGTCTGCAGGAGTGAGATCTGAACCGATGAAGGTTGTCTTCATTAACACAC  111

Query  63   AGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAGTTGTTCAAGAACTCACCGGTAAAA  122
            ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct  112  AGTACGTTCAGACAGATGCTCGGAGCTTCAAGACAATTGTTCAAGAACTCACAGGTAAAA  171

Query  123  ACGCAGTCGTCGCCGACGGTCCTTTTGAATTCTCCGGCCAAGGCTACGGTGGAAAAGATT  182
            |||||||||||||||||||||||| |||||||||||| ||||| |||||||| |||||||
Sbjct  172  ACGCAGTCGTCGCCGACGGTCCTTATGAATTCTCCGGTCAAGGGTACGGTGGCAAAGATT  231

Query  183  CATCACAGCGGTTTTGCAGCGTAGGAAAAGAAACAGAAGGAGGTGTAGAGACGACGGAGT  242
            ||||||||||||||||  |||||||||||||| ||||| |||||||||||||||||||||
Sbjct  232  CATCACAGCGGTTTTGTGGCGTAGGAAAAGAAGCAGAAAGAGGTGTAGAGACGACGGAGT  291

Query  243  TCGATAGTGTTTTCAGGGAGATGCCTCCGGTCGGCGAATTGCATAATCTTTGGTCAGACA  302
            |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  292  TCGATAGTTTTTTCAGAGAGATGCCTCCGGTCGGCGAATTGTATAATCTTTGGTCAGACC  351

Query  303  ATTGACTGGAGTGATAATTAGTT-TTTATTTAATTCCTTT--TATTAAGGCCCATTGGGT  359
            ||||||| || | |||||| ||| ||| |||  ||||     ||||||||||||||||||
Sbjct  352  ATTGACTAGACTAATAATTCGTTCTTT-TTT--TTCCCACAATATTAAGGCCCATTGGGT  408

Query  360  TTAATCTTATTATCTCAGGCCTTTGTAAAACACGAGTGATCCTAAGAATGTGAACTTCTT  419
            ||||| ||||||||||| |||| ||| |||||||| || |||| |||| |||||||||||
Sbjct  409  TTAATATTATTATCTCAAGCCTATGTGAAACACGAATGTTCCTTAGAAGGTGAACTTCTT  468

Query  420  TTTTG--GCTTAATGCATTAATGTAT  443
            ||||   |||||||||||||||||||
Sbjct  469  TTTTTTTGCTTAATGCATTAATGTAT  494



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21062186831


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5