BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471917
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17150.1 | Symbols: | Pectin lyase-like superfamily protein... 1631 0.0
> AT1G17150.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:5865707-5867495 FORWARD LENGTH=1209
Length=1209
Score = 1631 bits (883), Expect = 0.0
Identities = 1103/1209 (91%), Gaps = 16/1209 (1%)
Strand=Plus/Plus
Query 6 GTGCATTGATTTTGTGTTTATGGCTTTTTGTTTGCCTCTCTTGTTCAACGCCGTCACAAC 65
|||||||||||||||||| ||||||||| |||||| ||||||| ||| ||||||||||||
Sbjct 9 GTGCATTGATTTTGTGTTCATGGCTTTTGGTTTGCTTCTCTTGCTCATCGCCGTCACAAC 68
Query 66 AAGTCGCCCGATCACT-GGACCAAAAGTATTCGACGTTCGAAGATATGGTGCTAAAGGTG 124
||||||||| |||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 69 AAGTCGCCCAATCACTCGG-CCAAAAGTATTCGACGTTCGAAGTTATGGTGCTAAAGGTG 127
Query 125 ACGGTAAAACGGATAATACCAATGCATTCACAAATGCATGGAAAGATGCATGCACATGGA 184
||||||||| |||||| |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 128 ACGGTAAAATGGATAACACCAATGCGTTCACAAATGCATGGAAAGATGCATGCAGATGGA 187
Query 185 ATGGACCAAGCAAAATGTACATACCGA-AAGGAAGATTCTATCTTGGTGGTGTAACGTTT 243
||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 188 ATGGACCAAGCAAAATGTACATACC-ACTAGGAACATTCTATCTTGGTGGTGTAACGTTT 246
Query 244 GGAGGACCATGCAACGGTAAGATCTCGTTTGTCATCGATGGAACTTTGTTGGCTCCTCCG 303
| |||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 247 GTAGGACCATGCGATGGTAAGATCTCGTTTGTCATTGATGGAACTTTGTTGGCTCCTCCG 306
Query 304 AACAACGACGACATTAAAAAGGAAACGTGGATCAACTTCCGCTACATCGACTATCTCACG 363
||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 307 AACAACGACGACATTAAAAAGGAAATATGGATAAACTTCCGCTACATCAACTATCTCACG 366
Query 364 GTCTCCGGGGGTGGCACCGTCGACGGCCAAGGAAAAAGGTCTTGGTCACTAAATGACTGT 423
|||| ||||| ||||||| |||||||||||||||||| ||| |||||||||| ||| ||
Sbjct 367 GTCTTCGGGGATGGCACCCTCGACGGCCAAGGAAAAAAGTCATGGTCACTAATTGATTGC 426
Query 424 CACAAGAACAATAATTGTCCTAAACTTGCTATAAATATGGGGTTCGATTTCGTAAAAAAG 483
|| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 427 CAGAAGGACAATAATTGTCCCAAACTCGCTATAAATATGGGGTTCGATTTCGTAAAAAAC 486
Query 484 TCAAGAATGAATGGGATAACATCACTCAACAGCAAAGCAGGACACTTAAATTTCTTCTCC 543
||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 487 TCAAGCATGAATGGGATAACATCACTCAACAGTAAAGCCGGACACTTCAATTTCTTATCC 546
Query 544 GTTGACCACTTCGA-CATTACCGGAGTCGGCCTGAA-AGCTCCCGGCAATAGTCCCAACA 601
|||||||||||| | ||| || ||||| | | || ||||||| |||||||||||||||
Sbjct 547 GTTGACCACTTC-AGCATCACTAGAGTCAACAT-AATAGCTCCCAGCAATAGTCCCAACA 604
Query 602 CTGACGGGATCAAAATAGCTTTATCAAGTAACATGCAAATCTCAAACACTCACATCAGCA 661
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CTGACGGAATCAAAATAGCTTTATCAAGTAACATGCAAATCTCAAACACTCACATCAGCA 664
Query 662 CCGGAGACGATTGTATCGCAATGCTCTCAGGAAACACAAATTTTGATATCTATAATGTCA 721
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 665 CCGGAGACGATTGTATCGCAATGCTCTCTGGAAACACAAATTTTGATATCTATAATGTCA 724
Query 722 CGTGCGGACCGGGACATGGGATCAGTATCGGAAGCTTAGGAAAAAACAAAGACGAGAAA- 780
|||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||
Sbjct 725 AGTGCGGACCGGGACATGGAATTAGTATTGGAAGCTTAGGAAAAAACAAAGACGA-AAAG 783
Query 781 AATGTTAAGGGTTTAACGGTTAGAGATTCGGTCTTTACCGGTACGACCAACGGTATACGG 840
|||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 784 AATGTTAATGGTTTAATGGTTAGAAATTCGGTCTTTACCGGTACGACCAACGGTATACGG 843
Query 841 ATCAAGACATGGGAATCTTCAGCTTCAACCATC-GTAATT-TCCAATCTCGTATATAAGA 898
||||||||||||||||||||||||||||| ||| | |||| || ||| | || ||| |||
Sbjct 844 ATCAAGACATGGGAATCTTCAGCTTCAACAATCCG-AATTATC-AATTTAGTGTATGAGA 901
Query 899 ATCTACAGATGATAGATGTTGAAAGTCCTATCAACATTGATCAGAAGTATTGTCCTTACC 958
|||||||||||||| ||||||||| ||||||| ||||||||| || || ||||||||||
Sbjct 902 ATCTACAGATGATAAATGTTGAAAATCCTATCGGCATTGATCAAAAATACTGTCCTTACC 961
Query 959 CGCCCTGCAATAA-ATTGGGAGATTCTCACATTCAGATCCAAAACGTGACATTAAAGAAC 1017
|||| |||| || || ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 962 CGCCATGCAGCAATAT-GGGAGATTCTCACATTCAGATCCGAAACGTGACACTAAAGAAC 1020
Query 1018 ATTTGGGGAACGTCGAGGAACAAAGTGGCTGTGAAATTTCAATGTAGCAAAAGCTTTCCT 1077
||||||||||| || | ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1021 ATTTGGGGAACATCAAAGAATAAAGTGGCTGTGAAATTTCAATGTAGCAAAACCTTTCCT 1080
Query 1078 TGCAAAGATGTTCAATTAGTTGACATTAACTTAACGCACAATGGAGTCGACGGTCCTGCT 1137
|||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct 1081 TGCAAAGATGTTCAGTTAATTGACATTAACTTAACTCACCATGGAGTCGACGGTCCTGCA 1140
Query 1138 ATTGCGTTGTGTGATAACGTTGAAGGATCTGCTACTGGCAGGATAATTCCTCCGCATTGT 1197
| |||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||||
Sbjct 1141 AGTGCGTTGTGTGAGAACGTTGATGGATCTGCTACTGGGAAGATGGTTCCTCCGCATTGT 1200
Query 1198 CTAAATTGA 1206
|||| ||||
Sbjct 1201 CTAAGTTGA 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5