BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471922
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17190.1 | Symbols: ATGSTU26, GSTU26 | glutathione S-transfe... 1256 0.0
AT1G78340.1 | Symbols: ATGSTU22, GSTU22 | glutathione S-transfe... 228 9e-59
> AT1G17190.1 | Symbols: ATGSTU26, GSTU26 | glutathione S-transferase
tau 26 | chr1:5875350-5876545 FORWARD LENGTH=935
Length=935
Score = 1256 bits (680), Expect = 0.0
Identities = 849/928 (91%), Gaps = 21/928 (2%)
Strand=Plus/Plus
Query 1 AAACCTCAACCTCTATCATCCTCATCTACATTTCAATAAACAC-AAGAGTTGAAAAGATT 59
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 8 AAACCGCAACCTCTATCATCCTCATCTACATTTCAATAAACACAAAGAGTTGAAAACATT 67
Query 60 AAAT---T-GATCAGAACTAATTAACCGGATCTGAAGAATGGCG---GACGAAGTGATTC 112
|||| | ||||||||| | ||||||||||||| ||||||| ||| |||||||||
Sbjct 68 AAATCGATATATCAGAACT-A--AACCGGATCTGAAAAATGGCGAACGACCAAGTGATTC 124
Query 113 TTCTTGATTACTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCAGAGAAAG 172
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 125 TTCTTGATTACTGGCCAAGCATGTTCGGGATGAGGACGAAGATGGCTTTGGCTGAGAAAG 184
Query 173 GAGTCAAGTATGAGTACAAGGAAACAGATCCATGGGTTAAGACTCCTTTGCTCATAGAGA 232
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 185 GAGTCAAGTATGAGTACAAGGAAACAGATCCATGGGTTAAGACTCCTTTACTCATAGAGA 244
Query 233 TGAACCCCATTCACAAGAAGATTCCGGTTCTCATCCACAACGCTAAACCGATTTGTGAGT 292
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 245 TGAACCCGATTCACAAGAAGATTCCGGTTCTCATCCACAACGGTAAACCGATTTGTGAAT 304
Query 293 CTCTTATTCAGCTTGAGTACATCGATGAGGTTTGGTCCGATGCATACACAATCCTTCCCT 352
|||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||
Sbjct 305 CTCTTATTCAGCTTGAGTACATTGATGAGGTTTGGTCCGATGCATCCCCAATCCTTCCCT 364
Query 353 CTGATCCTTACCAGAAGTCTCAAGCTAGATTCTGGGCAGAATTCATCGACAAAAAGTTTT 412
||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||
Sbjct 365 CTGATCCTTACCAGAAGTCTCGAGCTAGATTTTGGGCTGAATTCATCGACAAAAAGTTTT 424
Query 413 ACGAGCCATCATGGAAGGTATGGGCAACAATGGGCGAAGAACTTGTTGCAGCCAAGAAGG 472
|||| ||||||||||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 425 ACGACCCATCATGGAAGGTATGGGCAACAATGGGCGAAGAACATGCAGCAGTGAAGAAGG 484
Query 473 AATTGTTGGAACATTTCAAGACACTTGAAACAGAGCTTGGAGACAAATCTTACTATGGTG 532
|||||||||||||||||||||||||||| |||||||| ||||||||| |||| || ||||
Sbjct 485 AATTGTTGGAACATTTCAAGACACTTGAGACAGAGCTCGGAGACAAACCTTATTACGGTG 544
Query 533 GTGAAGTATTTGGATACGTAGACATTGCATTGATGGGATACTACAGCTGGTTCAAGGCCA 592
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 545 GTGAAGTATTTGGATACCTAGACATTGCATTAATGGGATACTACAGCTGGTTCAAGGCCA 604
Query 593 TGGAGAAATTTGGTGAATTCAGTATCGAAACAGAGTTTCCTAAATTGACTACGTGGACCA 652
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 605 TGGAGAAATTTGGTGAATTCAGTATCGAAACAGAGTTTCCTATATTGACTACGTGGACCA 664
Query 653 AGAGGTGTTTAAAAAGAGAGAGTGTGGTTAAGGCACTGGCTGATTCTGATAGGATCATTG 712
|||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 665 AGAGGTGTTTGGAAAGAGAGAGTGTGGTCAAGGCATTGGCTGATTCTGATAGGATCATTG 724
Query 713 AGTATGTTTATGTCATGAGGAAGAAATTTGGAGCAGAGTAGAAAAATGGTTTGGGTATCA 772
|||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 725 AGTATGTTTATGTCCTGAGGAAGAAATTTGGAGCAGCGTAAAAAAATGGTTTGGGTTTCA 784
Query 773 AGAAGACTGTTATATTCTGTGTTTTTCTA-TGTTTCATGTGAGATTTGTAATTGTT-TTG 830
||||| ||||||| |||||| |||| || ||||||||||||| |||||||||||| ||
Sbjct 785 AGAAGGCTGTTATTTTCTGTCTTTTA-TAATGTTTCATGTGAGGTTTGTAATTGTTATTT 843
Query 831 -T-T-GAAAC-TTGAAAGTATGATTAACCATAATaaaaaaaaaTGTTTACTGTTCTCTTT 886
| | | ||||||||||||| |||| |||||| ||| |||||||||| | || |
Sbjct 844 CTGTCGTTTTGTTGAAAGTATGATAAACCGTAATAACGAAA--TGTTTACTGTACCCTAT 901
Query 887 TTTAT-CGACGACATTGCATTCAATTTG 913
| || ||||||||||||| ||||||||
Sbjct 902 TAAATTCGACGACATTGCACTCAATTTG 929
> AT1G78340.1 | Symbols: ATGSTU22, GSTU22 | glutathione S-transferase
TAU 22 | chr1:29472892-29473863 REVERSE LENGTH=877
Length=877
Score = 228 bits (123), Expect = 9e-59
Identities = 484/646 (75%), Gaps = 74/646 (11%)
Strand=Plus/Plus
Query 93 AATGGCGGACGAAGTGATTCTTCTT-GATTACTGGCCAAG--CATGTTCGGGATG-AGGA 148
||||||||| |||||||| ||| || |||| ||||| || || ||| ||| | | ||
Sbjct 66 AATGGCGGATGAAGTGATACTT-TTGGATTTTTGGCCGAGTCCA--TTC-GGA-GTAAGA 120
Query 149 -CGAAG-ATGGCTTTG-GCAGAGAAAGGAGTCAAGTATGAGTACAAGGA-AACAG-ATCC 203
|| || || || || | |||||||||||| ||| ||||||| | || || || || |
Sbjct 121 GCG-AGAATCGCGCTGAG-AGAGAAAGGAGTTGAGTTTGAGTAC-A-GAGAAGAGAAT-C 175
Query 204 ATG-G-GTTAAGA-CTCCTTTGC-TCATAGAGATGAACCCCATTCACAAGAAGATTCCGG 259
|| | | |||| | ||||||| || | ||||||| || ||||||||||||||||||
Sbjct 176 -TGAGAGACAAGAGC-CCTTTGCTTC-TCCAGATGAATCCGGTTCACAAGAAGATTCCGG 232
Query 260 TTCTCATCCACAACGCTAAACCGATTTGTGAGTCTCTT-ATTCAGCTTG---AGTACATC 315
||||||||||||| | ||||||| ||||||| || | | | | | ||| ||||||||
Sbjct 233 TTCTCATCCACAATGGTAAACCGGTTTGTGAATC-CATGAA-C-G-TTGTTCAGTACATC 288
Query 316 GATGAGGTTTGGTCCGATGCATACACAATCCTTCCCTCTGATCCTTACCAGA-AGTCTCA 374
|| |||||||||||||| | || |||||||||| |||||||||||||||| || ||||
Sbjct 289 GACGAGGTTTGGTCCGACAAAAACCCAATCCTTCCTTCTGATCCTTACCAGAGAG-CTCA 347
Query 375 AGCTAGATTCTGGGCAGAATTCATCGACAAAAAG-T-TTTACGAGCCATCATGGA-AGG- 430
||| ||||| |||| || ||| | |||| ||| | ||| |||||| | ||| | |
Sbjct 348 AGCCAGATTTTGGGTTGATTTCGTGGACACCAAGCTGTTT--GAGCCAGC--GGATAAGA 403
Query 431 TATGGGCAA-C-AATGGGCGAAGAACTTGTTG-CAGCCAAGAAGGAAT-TGTTGGAA-CA 485
| ||| ||| | || || || |||| | | |||||||||| || | | | | || ||
Sbjct 404 TTTGG-CAAACGAAAGGA-GAGGAACAAGA-GACAGCCAAGAAAGAGTATATAG-AAGCA 459
Query 486 TTTCAAGACACTTGAAACAGAGCTTGGAGACAAATCTTACTATGGTGGTGAAGTAT-TT- 543
| ||||| |||||||| ||||||||||||||| |||||| |||||| || || ||
Sbjct 460 CT-CAAGATTCTTGAAACTGAGCTTGGAGACAAACCTTACTTTGGTGGAGA--TACCTTC 516
Query 544 GGATACGTAGACATTGC-ATTGA-TGGGATACTACAGCTGGTTC-AAGGCCATG-GAGAA 599
|| | |||||||||||| || || ||| ||| |||||||||||| ||| | || |||||
Sbjct 517 GGGTTCGTAGACATTGCCAT-GACTGG-ATATTACAGCTGGTTCGAAG-C-ATCAGAGAA 572
Query 600 ATTTGGTGAA-TTCAGTATCGAAACAGAGTTTCCTAAATTGACTA-CGT-GGACCAAGAG 656
| | | | || ||||| |||||| |||||| ||| | | ||| | | | || | |||||
Sbjct 573 ACTAGCT-AACTTCAGCATCGAACCAGAGTGTCCCACACTGA-TGGCTTCGG-CTAAGAG 629
Query 657 GTGTTTAAAAAGAGAGAGTGTGGTTAAGGCACTGGC-TGATTCTGA 701
|||||| | ||||| || |||||| || | || | |||||||||
Sbjct 630 GTGTTTGCAGAGAGAAAGCGTGGTTCAGTCCCTT-CATGATTCTGA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44607922536
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5