BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471923
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17200.1 | Symbols: | Uncharacterised protein family (UPF04... 1282 0.0
> AT1G17200.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr1:5878412-5880041 FORWARD LENGTH=866
Length=866
Score = 1282 bits (694), Expect = 0.0
Identities = 801/853 (94%), Gaps = 6/853 (1%)
Strand=Plus/Plus
Query 1 ACTTATTTATAACCACATTTTCTCTCAGAATCCATaaaaagagagaaagataaataaaaa 60
|||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 1 ACTTGTTTATAACCACATTTTCTCTCAAAATCCATAAAAAGAGAGAGAGATAAATAAAGA 60
Query 61 caaaactgaagaagctagaagatggagaaaagTAATGATCATGACAAGGCTAGCCACGGC 120
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAAACTAAAGAAGCTAGAAGATGGAGAAAAGTAATGATCATGACAAGGCTAGCCACGGC 120
Query 121 GGCTCCGGTGGTGGTGCCACTGAGAAGTGGGAGGAGAGTAGTCCT-GGAATCCGAACCGC 179
|||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||| ||
Sbjct 121 GGCTCCGGTGGTGGTGCCACGGAGAAGTGGGAGGAGACTAG-CCTCGGAATCCGAACTGC 179
Query 180 CGAGACAATGCTCCGGTTAGCTCCGGTGGGGCTTTGTGTTGCAGCGCTTGTTGTCATGCT 239
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 180 CGAGACAATGCTCCGGTTAGCTCCGGTGGGCCTTTGTGTTGCAGCACTTGTTGTCATGCT 239
Query 240 TAAGGACTCCGAGACTAATGAGTTCGGTTCAATTTCTTACTCCAATCTCACAGCTTTTAG 299
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TAAGGACTCTGAGACTAATGAGTTCGGTTCAATTTCTTACTCCAATCTCACAGCCTTTAG 299
Query 300 GTACTTGGTGCACGCAAATGGAATATGTGCAGGCTACTCTCTTCTATCAGCAGCCATTGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTACTTGGTGCACGCAAATGGAATATGTGCAGGCTACTCTCTTCTATCAGCAGCCATTGC 359
Query 360 AGCGATGCCTCGTTCTTCTTCGACAATGCCTCGTGTTTGGACCTTCTTCTGTCTCGACCA 419
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 360 AGCGATGCCTCGTTCTTCTTCGACAATGCCTCGTGTTTGGACCTTCTTTTGTCTCGACCA 419
Query 420 GCTTCTGACCTACCTGGTTCTTGCTGCCGGAGCAGTGTCAGCTGAAGTTCTATACTTAGC 479
||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||
Sbjct 420 GCTTCTGACCTACCTGGTTCTTGCTGCTGGAGCTGTATCAGCTGAGGTTCTATACTTGGC 479
Query 480 TTACAATGGAGACTCAGCCATTACTTGGAGCGATGCATGTAGCTCCTACGGTGGTTTCTG 539
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 TTACAATGGAGACTCAGCCATTACTTGGAGCGATGCATGTAGCTCCTATGGCGGTTTCTG 539
Query 540 CCATAGAGCCACTGCTTCTGTTATAATCACATTCTTCGCGGTTTGCTTCTACCTCCTTCT 599
||||||||||||||||||||||||||||||||||| | |||||| |||||| || ||||
Sbjct 540 TCATAGAGCCACTGCTTCTGTTATAATCACATTCTTTGTGGTTTGTTTCTACATCGTTCT 599
Query 600 CTCACTAATCTCCTCTTACAAGCTCTTTACTCGCTTTGATCCTCCTTCCATGGTTGACTC 659
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CTCTCTAATCTCCTCTTATAAGCTCTTTACTCGCTTTGATCCTCCTTCCATTGTTGACTC 659
Query 660 CGACAAGACCCTCGAAGTCGCTGTCTTCGGAAGTTAGATCCTCCATTTGCTTTTCAAGTA 719
|| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 CGCCAAGAATCTCGAAGTCGCTGTCTTCGGAAGTTAGATCCTCCATTTGCTCTTCAAGTA 719
Query 720 CATCTAATTTGTTAAGTTTCACATGTTGTCT-TTTTTAACTTTGGTGAGGAGAAAGAATG 778
|||||| ||||| | |||||| ||||||| | |||||||||||||| | |||||||||||
Sbjct 720 CATCTAGTTTGTCATGTTTCAAATGTTGTGTGTTTTTAACTTTGGTCAAGAGAAAGAATG 779
Query 779 CTTTTGTGTTTGCTCTTGTTGTCATTGCTTTTATTCCTATTACGACTGGTCTAACTAAAT 838
||| ||||||||||||| || ||||||||||| |||||||||||||| |||||||||| |
Sbjct 780 CTTATGTGTTTGCTCTTCTT-TCATTGCTTTTCTTCCTATTACGACTCGTCTAACTAA-T 837
Query 839 TAAAGG-TATAAA 850
| |||| ||||||
Sbjct 838 TGAAGGGTATAAA 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5