BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471927

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17235.1 | Symbols: RTFL11 | ROTUNDIFOLIA like 11 | chr1:589...   246    7e-65


> AT1G17235.1 | Symbols: RTFL11 | ROTUNDIFOLIA like 11 | chr1:5895351-5895710 
FORWARD LENGTH=360
Length=360

 Score =  246 bits (133),  Expect = 7e-65
 Identities = 158/169 (93%), Gaps = 5/169 (3%)
 Strand=Plus/Plus

Query  115  AACATGGGTGGATTTTTGGC--AG-AGAAGAACTCTAATTCCAAAATCAGGAACAGCTTC  171
            ||||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||
Sbjct  193  AACATGGGTGGATTTTTGGCAAAGAAGACGAACTCTAATTCCAAAATCAGGAACAGCTTC  252

Query  172  ACTTCGAAATGCTCTTCTCTGATGAAACGACAACATGCTCGTCTCTGTATAATTCGACTC  231
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  253  ACTTCGAAATGCACTTCTCTGATGAAACAACAACATGCTCGTCTCTGTATAATTCGACTC  312

Query  232  TGCGCCACAATGCTCCTCCGCTCTTACATC-GATCACGACGATTGCTAA  279
            |||||||| |||||||||||||| |||| | ||||||||||||| ||||
Sbjct  313  TGCGCCACGATGCTCCTCCGCTCGTACA-CAGATCACGACGATTACTAA  360


 Score =  128 bits (69),  Expect = 3e-29
 Identities = 75/78 (96%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  1   ATGTGTTTAATACTCCATAGTTGTACGGCGAGATTACCTCACGCGCAAAATCTTCAAATT  60
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1   ATGTGTATAATACTCCATAGTTGTACGGCGAGATTACCTCAAGCGCAAAATCTTCAAATT  60

Query  61  GAGCTAAAACAGGACCAA  78
           ||||||||||| ||||||
Sbjct  61  GAGCTAAAACAAGACCAA  78



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5