BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471931
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17280.1 | Symbols: UBC34 | ubiquitin-conjugating enzyme 34 ... 1640 0.0
AT5G50430.1 | Symbols: UBC33 | ubiquitin-conjugating enzyme 33 ... 736 0.0
> AT1G17280.1 | Symbols: UBC34 | ubiquitin-conjugating enzyme 34
| chr1:5916871-5920089 REVERSE LENGTH=1135
Length=1135
Score = 1640 bits (888), Expect = 0.0
Identities = 1048/1120 (94%), Gaps = 31/1120 (3%)
Strand=Plus/Plus
Query 17 tctctctctctctAACCCGAGGAGAAGGAGAAAGTGTTTGATTAAGGAGAAACCCC-AGA 75
||| ||||||||| ||||| |||||||||||||||| |||||| |||||||||| |||
Sbjct 23 TCTTTCTCTCTCT-ACCCGCGGAGAAGGAGAAAGTG--AGATTAACGAGAAACCCCAAGA 79
Query 76 GAGAAAATCTTCCTCGACAAAATTTCGATTGAGCAGCTGCAGCTACTCACTTAGTCCATA 135
|||||||||||| ||||||||| ||||||| ||| |||||||||| |||||| |||||||
Sbjct 80 GAGAAAATCTTCATCGACAAAA-TTCGATTCAGCTGCTGCAGCTATTCACTTCGTCCATA 138
Query 136 GCACTTAGATGGCAGAAAAGGCTTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTT 195
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 139 GCACGTAGATGGCAGAAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTT 198
Query 196 GCAAGGAACCTGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC 255
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 GCAAGGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC 258
Query 256 ATTATGTGCTGGAAGGTAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGA 315
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGA 318
Query 316 TCAAGTTTCCTCCTGAGTATCCTTACAAGCCACCTGGGATTACAATGACTACACCAAATG 375
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 319 TCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACAATGACTACACCAAATG 378
Query 376 GTCGATTCATGACACAAAAGAAAATCTGTTTGTCTATGAGTGATTTTCACCCAGAAAGCT 435
|||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 379 GTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATTTTCATCCAGAAAGCT 438
Query 436 GGAACCCTATGTGGTCTGTGTCAAGCATACTTACAGGCCTTCTCTCATTTATGATGGATA 495
|||| || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 439 GGAATCCGATGTGGTCTGTATCAAGCATACTTACAGGACTTCTCTCATTTATGATGGATA 498
Query 496 CCAGTCCGACAACTGGAAGTGTGAACACTACTGTAGCTGAGAAACAACGGTTGGCTAAGT 555
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 499 CCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAACAACGGTTGGCTAAGT 558
Query 556 CATCTCTAGCTTTCAATTGTAAAACCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAG 615
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CATCTCTCGCTTTCAATTGTAAAACCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAG 618
Query 616 AGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTGCCACACAAGTGACAACACCAGAGT 675
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 619 AGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTACCACACAACTGACAACACCAGAGT 678
Query 676 CTCCTCAAAAGAGCGATACCAAAGTCGAGTCAGAGAAAACCATCGATCCAACTAAGG-AG 734
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 679 CTCCTCAAAAGAGCGATACCAAAGTCGAGTCAGAGAAAACCATCGATCCAACAAAGGGAG 738
Query 735 GACTCAGAAGGTGGCTTGAAGGAGAGGAAAAAGAACAAGAAACAGGGATTGCCAGCGTGG 794
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 739 -ATTCAGAAGGTGGCTTGAAGGAGAGGAAAAAGAACAATAAACAGGGATTGCCAGCGTGG 797
Query 795 ATAATACTGTTGCTAGTGTCGGTTTTCGGTGTTGTAATGGCGTTGCCTTTACTTCAACTG 854
|||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 798 ATAATACTGTTGCTAGTGTCGGTTTTCGGTGTGGTAATGGCGTTGCCTCTGCTTCAACTG 857
Query 855 TAATTTCTATGCAACAG---T--A------------A-AATCTCTCCTTGtctctctctc 896
| |||||||||||||| | | | ||||||||||||| ||||||||
Sbjct 858 TGATTTCTATGCAACAAACCTCGACCTGGTTTTCGTATAATCTCTCCTTGTGTCTCTCTC 917
Query 897 tctTCAGCATCAAGAGTAGTCTCCTTTTGTCTAGTGCTCTTCGTCTGAATTTACTCATTT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TCTTCAGCATCAAGAGTAGTCTCCTTTTGTCTAGTGCTCTTCGTCTGAATTTACTCATTT 977
Query 957 TAGCCCCTCATGGTTTG--CTTGTAAAAGCAGATAACATAAGTTTGGTTTCACAATTACA 1014
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 978 -AGCACCTCATGGTTTGTGCTTGTAAAAGCAGATAACATAAGTTTGGTTTCACAATTACA 1036
Query 1015 TACATATTGTAGCTTTGTTGGAACTACTTTGTATAGTATAT--GAATTGAGGGTAATGGT 1072
||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1037 TACATATTGTAGCTTCGTTGGAACTACTTTGTATAGTATATATGAATTGAGGATAATGGT 1096
Query 1073 TTGGATTTGATAAAATAGAACCGTATGGTTTTCAAATTGT 1112
|||||||||| |||||||||||||||||||||||||||||
Sbjct 1097 TTGGATTTGA-AAAATAGAACCGTATGGTTTTCAAATTGT 1135
> AT5G50430.1 | Symbols: UBC33 | ubiquitin-conjugating enzyme 33
| chr5:20534173-20537117 REVERSE LENGTH=1216
Length=1216
Score = 736 bits (398), Expect = 0.0
Identities = 642/757 (85%), Gaps = 28/757 (4%)
Strand=Plus/Plus
Query 135 AGCACTTAGATGGCAGAAAAGGCTTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTT 194
|||| ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 283 AGCATTTAGATGGCAGAAAAAGCTTGTATAAAGCGTCTTCAAAAAGAATACAGAGCGCTT 342
Query 195 TGCAAGGAACCTGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGG 254
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 343 TGCAAGGAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGG 402
Query 255 CATTATGTGCTGGAAGGTAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAG 314
||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 403 CATTATGTGTTGGAAGGCAGTGAGGGAACGCCTTTTGCAGGTGGATTTTACTATGGAAAG 462
Query 315 ATCAAGTTTCCTCCTGAGTATCCTTACAAGCCACCTGGGATTACAATGACTACACCAAAT 374
|||||||| ||||| || |||||||||||||||||||| || |||||||| |||||||||
Sbjct 463 ATCAAGTTCCCTCCAGAATATCCTTACAAGCCACCTGGAATCACAATGACCACACCAAAT 522
Query 375 GGTCGATTCATGACACAAAAGAAAATCTGTTTGTCTATGAGTGATTTTCACCCAGAAAGC 434
|||||||| |||| |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 523 GGTCGATTTGTGACGCAAAAGAAAATCTGCTTGTCTATGAGTGACTTTCATCCAGAAAGC 582
Query 435 TGGAACCCTATGTGGTCTGTGTCAAGCATACTTACAGGCCTTCTCTCATTTATGATGGAT 494
||||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 583 TGGAATCCAATGTGGTCAGTGTCAAGCATACTTACAGGACTTCTCTCATTTATGATGGAT 642
Query 495 ACCAGTCCGACAACTGGAAGTGTGAACACTACTGTAGCTGAGAAACAACGGTTGGCTAAG 554
| ||| || ||||| |||||||| ||||||| |||||| ||||||||||||||||| |||
Sbjct 643 AACAGCCCCACAACGGGAAGTGTAAACACTAGTGTAGCCGAGAAACAACGGTTGGCGAAG 702
Query 555 TCATCTCTAGCTTTCAATTGTAAAACCCCAGCATTTCG-AAAGCTATTTCCAGAGTATGT 613
|||||||| |||||||||||||||| | |||| || ||| |||||||| ||||||||
Sbjct 703 TCATCTCTTGCTTTCAATTGTAAAAGTGTAACATTCCGGAAA-CTATTTCCCGAGTATGT 761
Query 614 AGAGAAGTACAACCAGCAGCAACTAGCTGA-GCA-A-GCTGCCACACAAGTGACAACACC 670
|||||||||| |||||| ||| ||||||| | | | || ||||| ||| ||||||| |
Sbjct 762 CGAGAAGTACAGCCAGCAACAAGTAGCTGAAGAAGAAGCAGCCACTCAACAGACAACAAC 821
Query 671 A---GAG--TC----T---CCTCAAAAG-AGCGATACCAAAGTCGAGTCAGAGAAAACCA 717
| ||| || | ||||| ||| | | || | |||||||| |||||||||| |
Sbjct 822 ATCTGAGAATCAGGATTTTCCTCAGAAGGA-CAATGCGAAAGTCGAATCAGAGAAAAGCG 880
Query 718 TCGATCC-AACTAAGGAG-G-ACTCA-GAAGGTGGC-TTGAAGGAGAGGAAAAAGAACAA 772
| | || || ||||| | | ||| |||| ||| ||||| ||||||| || ||||||
Sbjct 881 TTGGTCTTAAA-AAGGAAAGTATTCAAGAAG-TGGGATTGAAAGAGAGGAGAAGGAACAA 938
Query 773 GAAACAGGGATTGCCAGCGT-GGATAATACTGTTGCTAGTGTCGGTTTTCGGTGTTGTAA 831
|||| | | ||| || | || ||||| || |||||||||| ||| || ||||||||||||
Sbjct 939 GAAAGAAGCATTACCGG-GTTGGATAGTATTGTTGCTAGTATCGATTGTCGGTGTTGTAA 997
Query 832 TGGCGTTGCCTTTACTTCAACTGTAATTTCTATGCAA 868
||||||||||||| ||||| |||| |||| ||||||
Sbjct 998 TGGCGTTGCCTTTGCTTCAGCTGTGATTTAGATGCAA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5