BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471931 Length=1112 Score E Sequences producing significant alignments: (Bits) Value AT1G17280.1 | Symbols: UBC34 | ubiquitin-conjugating enzyme 34 ... 1640 0.0 AT5G50430.1 | Symbols: UBC33 | ubiquitin-conjugating enzyme 33 ... 736 0.0 > AT1G17280.1 | Symbols: UBC34 | ubiquitin-conjugating enzyme 34 | chr1:5916871-5920089 REVERSE LENGTH=1135 Length=1135 Score = 1640 bits (888), Expect = 0.0 Identities = 1048/1120 (94%), Gaps = 31/1120 (3%) Strand=Plus/Plus Query 17 tctctctctctctAACCCGAGGAGAAGGAGAAAGTGTTTGATTAAGGAGAAACCCC-AGA 75 ||| ||||||||| ||||| |||||||||||||||| |||||| |||||||||| ||| Sbjct 23 TCTTTCTCTCTCT-ACCCGCGGAGAAGGAGAAAGTG--AGATTAACGAGAAACCCCAAGA 79 Query 76 GAGAAAATCTTCCTCGACAAAATTTCGATTGAGCAGCTGCAGCTACTCACTTAGTCCATA 135 |||||||||||| ||||||||| ||||||| ||| |||||||||| |||||| ||||||| Sbjct 80 GAGAAAATCTTCATCGACAAAA-TTCGATTCAGCTGCTGCAGCTATTCACTTCGTCCATA 138 Query 136 GCACTTAGATGGCAGAAAAGGCTTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTT 195 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 139 GCACGTAGATGGCAGAAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTT 198 Query 196 GCAAGGAACCTGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC 255 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 GCAAGGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGC 258 Query 256 ATTATGTGCTGGAAGGTAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGA 315 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 259 ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGA 318 Query 316 TCAAGTTTCCTCCTGAGTATCCTTACAAGCCACCTGGGATTACAATGACTACACCAAATG 375 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 319 TCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACAATGACTACACCAAATG 378 Query 376 GTCGATTCATGACACAAAAGAAAATCTGTTTGTCTATGAGTGATTTTCACCCAGAAAGCT 435 |||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||| Sbjct 379 GTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATTTTCATCCAGAAAGCT 438 Query 436 GGAACCCTATGTGGTCTGTGTCAAGCATACTTACAGGCCTTCTCTCATTTATGATGGATA 495 |||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 439 GGAATCCGATGTGGTCTGTATCAAGCATACTTACAGGACTTCTCTCATTTATGATGGATA 498 Query 496 CCAGTCCGACAACTGGAAGTGTGAACACTACTGTAGCTGAGAAACAACGGTTGGCTAAGT 555 |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 499 CCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAACAACGGTTGGCTAAGT 558 Query 556 CATCTCTAGCTTTCAATTGTAAAACCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAG 615 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 559 CATCTCTCGCTTTCAATTGTAAAACCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAG 618 Query 616 AGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTGCCACACAAGTGACAACACCAGAGT 675 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 619 AGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTACCACACAACTGACAACACCAGAGT 678 Query 676 CTCCTCAAAAGAGCGATACCAAAGTCGAGTCAGAGAAAACCATCGATCCAACTAAGG-AG 734 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 679 CTCCTCAAAAGAGCGATACCAAAGTCGAGTCAGAGAAAACCATCGATCCAACAAAGGGAG 738 Query 735 GACTCAGAAGGTGGCTTGAAGGAGAGGAAAAAGAACAAGAAACAGGGATTGCCAGCGTGG 794 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 739 -ATTCAGAAGGTGGCTTGAAGGAGAGGAAAAAGAACAATAAACAGGGATTGCCAGCGTGG 797 Query 795 ATAATACTGTTGCTAGTGTCGGTTTTCGGTGTTGTAATGGCGTTGCCTTTACTTCAACTG 854 |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| Sbjct 798 ATAATACTGTTGCTAGTGTCGGTTTTCGGTGTGGTAATGGCGTTGCCTCTGCTTCAACTG 857 Query 855 TAATTTCTATGCAACAG---T--A------------A-AATCTCTCCTTGtctctctctc 896 | |||||||||||||| | | | ||||||||||||| |||||||| Sbjct 858 TGATTTCTATGCAACAAACCTCGACCTGGTTTTCGTATAATCTCTCCTTGTGTCTCTCTC 917 Query 897 tctTCAGCATCAAGAGTAGTCTCCTTTTGTCTAGTGCTCTTCGTCTGAATTTACTCATTT 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 TCTTCAGCATCAAGAGTAGTCTCCTTTTGTCTAGTGCTCTTCGTCTGAATTTACTCATTT 977 Query 957 TAGCCCCTCATGGTTTG--CTTGTAAAAGCAGATAACATAAGTTTGGTTTCACAATTACA 1014 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 978 -AGCACCTCATGGTTTGTGCTTGTAAAAGCAGATAACATAAGTTTGGTTTCACAATTACA 1036 Query 1015 TACATATTGTAGCTTTGTTGGAACTACTTTGTATAGTATAT--GAATTGAGGGTAATGGT 1072 ||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| Sbjct 1037 TACATATTGTAGCTTCGTTGGAACTACTTTGTATAGTATATATGAATTGAGGATAATGGT 1096 Query 1073 TTGGATTTGATAAAATAGAACCGTATGGTTTTCAAATTGT 1112 |||||||||| ||||||||||||||||||||||||||||| Sbjct 1097 TTGGATTTGA-AAAATAGAACCGTATGGTTTTCAAATTGT 1135 > AT5G50430.1 | Symbols: UBC33 | ubiquitin-conjugating enzyme 33 | chr5:20534173-20537117 REVERSE LENGTH=1216 Length=1216 Score = 736 bits (398), Expect = 0.0 Identities = 642/757 (85%), Gaps = 28/757 (4%) Strand=Plus/Plus Query 135 AGCACTTAGATGGCAGAAAAGGCTTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTT 194 |||| ||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||| Sbjct 283 AGCATTTAGATGGCAGAAAAAGCTTGTATAAAGCGTCTTCAAAAAGAATACAGAGCGCTT 342 Query 195 TGCAAGGAACCTGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGG 254 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||| Sbjct 343 TGCAAGGAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGG 402 Query 255 CATTATGTGCTGGAAGGTAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAG 314 ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 403 CATTATGTGTTGGAAGGCAGTGAGGGAACGCCTTTTGCAGGTGGATTTTACTATGGAAAG 462 Query 315 ATCAAGTTTCCTCCTGAGTATCCTTACAAGCCACCTGGGATTACAATGACTACACCAAAT 374 |||||||| ||||| || |||||||||||||||||||| || |||||||| ||||||||| Sbjct 463 ATCAAGTTCCCTCCAGAATATCCTTACAAGCCACCTGGAATCACAATGACCACACCAAAT 522 Query 375 GGTCGATTCATGACACAAAAGAAAATCTGTTTGTCTATGAGTGATTTTCACCCAGAAAGC 434 |||||||| |||| |||||||||||||| |||||||||||||| ||||| ||||||||| Sbjct 523 GGTCGATTTGTGACGCAAAAGAAAATCTGCTTGTCTATGAGTGACTTTCATCCAGAAAGC 582 Query 435 TGGAACCCTATGTGGTCTGTGTCAAGCATACTTACAGGCCTTCTCTCATTTATGATGGAT 494 ||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 583 TGGAATCCAATGTGGTCAGTGTCAAGCATACTTACAGGACTTCTCTCATTTATGATGGAT 642 Query 495 ACCAGTCCGACAACTGGAAGTGTGAACACTACTGTAGCTGAGAAACAACGGTTGGCTAAG 554 | ||| || ||||| |||||||| ||||||| |||||| ||||||||||||||||| ||| Sbjct 643 AACAGCCCCACAACGGGAAGTGTAAACACTAGTGTAGCCGAGAAACAACGGTTGGCGAAG 702 Query 555 TCATCTCTAGCTTTCAATTGTAAAACCCCAGCATTTCG-AAAGCTATTTCCAGAGTATGT 613 |||||||| |||||||||||||||| | |||| || ||| |||||||| |||||||| Sbjct 703 TCATCTCTTGCTTTCAATTGTAAAAGTGTAACATTCCGGAAA-CTATTTCCCGAGTATGT 761 Query 614 AGAGAAGTACAACCAGCAGCAACTAGCTGA-GCA-A-GCTGCCACACAAGTGACAACACC 670 |||||||||| |||||| ||| ||||||| | | | || ||||| ||| ||||||| | Sbjct 762 CGAGAAGTACAGCCAGCAACAAGTAGCTGAAGAAGAAGCAGCCACTCAACAGACAACAAC 821 Query 671 A---GAG--TC----T---CCTCAAAAG-AGCGATACCAAAGTCGAGTCAGAGAAAACCA 717 | ||| || | ||||| ||| | | || | |||||||| |||||||||| | Sbjct 822 ATCTGAGAATCAGGATTTTCCTCAGAAGGA-CAATGCGAAAGTCGAATCAGAGAAAAGCG 880 Query 718 TCGATCC-AACTAAGGAG-G-ACTCA-GAAGGTGGC-TTGAAGGAGAGGAAAAAGAACAA 772 | | || || ||||| | | ||| |||| ||| ||||| ||||||| || |||||| Sbjct 881 TTGGTCTTAAA-AAGGAAAGTATTCAAGAAG-TGGGATTGAAAGAGAGGAGAAGGAACAA 938 Query 773 GAAACAGGGATTGCCAGCGT-GGATAATACTGTTGCTAGTGTCGGTTTTCGGTGTTGTAA 831 |||| | | ||| || | || ||||| || |||||||||| ||| || |||||||||||| Sbjct 939 GAAAGAAGCATTACCGG-GTTGGATAGTATTGTTGCTAGTATCGATTGTCGGTGTTGTAA 997 Query 832 TGGCGTTGCCTTTACTTCAACTGTAATTTCTATGCAA 868 ||||||||||||| ||||| |||| |||| |||||| Sbjct 998 TGGCGTTGCCTTTGCTTCAGCTGTGATTTAGATGCAA 1034 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54517791870 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5