BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471933
Length=455
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17285.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 614 3e-175
AT1G17300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 207 5e-53
> AT1G17285.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G17300.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr1:5920774-5921415 FORWARD LENGTH=537
Length=537
Score = 614 bits (332), Expect = 3e-175
Identities = 430/473 (91%), Gaps = 23/473 (5%)
Strand=Plus/Plus
Query 1 AAGTTAAGAGGTTGCAAGAGTCCTAACGG-AATTACAAGAAGAAAACTCACAATGAAAAG 59
|||| |||||||| |||||||||||| || |||| |||||||| |||||| |||||| ||
Sbjct 70 AAGTCAAGAGGTTTCAAGAGTCCTAAAGGAAATTTCAAGAAGAGAACTCAGAATGAAGAG 129
Query 60 ATACTGTTCAGTGGCTCTGGTTCTGTTACTTGTAGCTTTCTTTAGCAGCAAGTATAGTGT 119
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATGCTGTTCAGTGGCTCTGGTTCTGTTACTTGTAGCTTTCTTTAGCAGCAAGTATAGTGT 189
Query 120 AGAAGGCCGTTCTCTGTTAACGATGACACATTCGAGTCAAGCTCAGAGAGATTTGCATGT 179
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 190 AGAAGGACGTTCTCTGTTAACGATGACACATTCGAGTCAAGCTGTGAGAGATTTGCCTGT 249
Query 180 AAGCAAGGAGATGAAGAAAGAGCCACTTAAGGGAGAAAAAGATAGCTTCAGAAGAATCCC 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 250 AAGCAAGGAGATGAAGAAAGAGCCACTTAAGGGAGAAAATGATAGCTTCAGAAGAATCCC 309
Query 240 AAGGAGTGGCTCAAACCCTATACAGAACAAGTGTAATCCACCGGTAGATGTTAAAGGAAG 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 310 AAGGAGTGGCTCAAACCCTATACAGAACAAGTGTAATCCACCGGTAGATGTTAAAGCAAG 369
Query 300 TAGGAA-C--CAGCAGATCACAGCATCAAGAAAACCTTAAA-TT----TT-T------GT 344
|||||| | |||||||||||| |||||||||||||||||| || || | ||
Sbjct 370 TAGGAAACAACAGCAGATCACAACATCAAGAAAACCTTAAAATTCCAGTTCTTTTTTTGT 429
Query 345 CCTTCTT-AGATCCTCTACtttttttctttttttCATAGAATAGGTTATCTAGACATGTG 403
|||| || |||||||||||||| || |||||| |||||||||| | |||||||||||
Sbjct 430 CCTTATTTAGATCCTCTACTTTCGTT-TTTTTTG--TAGAATAGGT-ACCTAGACATGTG 485
Query 404 TG-TTCTTAATGCTGTAATCTACTTGAAATATATGAACTCATCTTTTAATCTT 455
|| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TGCTT-TTAATGCTGTAATCTACTTGAAATATATGAACTCATCTTTTAATCTT 537
> AT1G17300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G17285.1);
Has 27 Blast hits to 27 proteins in 4 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5926994-5927784
FORWARD LENGTH=695
Length=695
Score = 207 bits (112), Expect = 5e-53
Identities = 121/125 (97%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 142 ATGACACATTCGAGTCAAGCT-CAGAGAGATTTGCATGTAAGCAAGGAGATGAAGAAAGA 200
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACACATTCGAGTCAAGCTGC-GAGAGATTTGCATGTAAGCAAGGAGATGAAGAAAGA 59
Query 201 GCCACTTAAGGGAGAAAAAGATAGCTTCAGAAGAATCCCAAGGAGTGGCTCAAACCCTAT 260
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 60 GCCACTTAAGGGAGAAAAAGATAGCTTAAGAAGAATCCCAAGGGGTGGCTCAAACCCTAT 119
Query 261 ACAGA 265
|||||
Sbjct 120 ACAGA 124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21665399819
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5