BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471935
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17310.1 | Symbols: | MADS-box transcription factor family ... 1020 0.0
> AT1G17310.1 | Symbols: | MADS-box transcription factor family
protein | chr1:5928014-5928667 REVERSE LENGTH=654
Length=654
Score = 1020 bits (552), Expect = 0.0
Identities = 613/642 (95%), Gaps = 6/642 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGAAGAAAGAGAAACTTCAACGATGACTTGCTTGACGCCCAAGGATCCACTTCAA 60
||||||| |||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 16 ATGGAAGGAGAAAGAGAAACTTCATCGATGACTTGCTTGACGCCCAAGGATTCTGTTCAA 75
Query 61 AGCCCTAACATGTTGGTTAGTCAACCAAAAAA-G-GA-AACAACACAAACCCCTAAAACG 117
|||||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||
Sbjct 76 AGCCCTAACATGTTGGTTAGACAACCAAAAAAGGAGACAACAACACAAACCCCTAAAACG 135
Query 118 ACACGAGGAAGACAGAAGATAGAGATCAAGATAATCGAGGAAGAGACCAAGAGACAAGTA 177
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 136 ACACGAGGAAGACAGAAGATAGAGATCAAGAAAATCGAGGAAGAGACCAAGAGACAAGTA 195
Query 178 ACGTTCTCGAAACGCCGTCGTGGGCTGTTCAAGAAATCTGCTGAATTGAGCGTTCTCACG 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 196 ACGTTCTCGAAACGCCGTCGTGGGCTGTTCAAGAAATCCGCTGAATTGAGCGTTCTCACG 255
Query 238 GGCGCCAAAATCGCTGTCATAACGTTCTCTAAATGCGGTAGGATCTACAGATTTGGCCAT 297
||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 256 GGCGCAAAAATCGCCGTCATAACGTTCTCTAAATGCGATAGGATCTACAGATTTGGCCAT 315
Query 298 GTAGACGCATTGATAGACAAGTATCTTCGTAAGAGTCCGGTGAAGTTGGAGGGATATTCC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GTAGACGCATTGATAGACAAGTATCTTCGTAAGAGTCCGGTGAAGTTGGAGGGATATTCC 375
Query 358 GGTGATAACGTGGCGGATGAGGAAAGTAGGAGACCGTGGTGGGAGCGTCCGGTGGAGAGT 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GGTGATAACGCGGCGGATGAGGAAAGTAGGAGACCGTGGTGGGAGCGTCCGGTGGAGAGT 435
Query 418 GTGCCAGAAGAGGAGCTTGAAGAGTACATGGCAGCATTGAGTATGTTGAGAGAAAATATA 477
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 436 GTGCCAGAAGAGGAGCTTGAGGAGTACATGGCAGCATTGAGTATGTTGAGAGAAAATATA 495
Query 478 GGGAAAAAGATCGTTGCGATGGGTAACGATCGGACTGTTGAGATGGTTCCGGCATGGCCA 537
||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 496 GGGAAAAAGATTGTGGCGATGGGTAACGATCGGACGGTTGATATGGTTCCGGCATGGCCA 555
Query 538 ATCAATGTGATGGGTTGGAAACCACCGATGGATATGCAAAACTTGGAAAATCTGACTGAT 597
|||||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct 556 ATCAATGTGATGGGATGGAAACCAACGATGGATATGCAAAAATTGGAAAATCTGACGGAT 615
Query 598 GGGATTACTCGATGCCGTGTAGGTGATCAAAACGGTGATTGA 639
||| ||| |||||||||||||||| |||||||||||||||
Sbjct 616 GGGGTTAATCGATGCCGTGTAGGT---CAAAACGGTGATTGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5