BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471936
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17330.1 | Symbols: | Metal-dependent phosphohydrolase | ch... 1338 0.0
> AT1G17330.1 | Symbols: | Metal-dependent phosphohydrolase |
chr1:5929909-5931831 FORWARD LENGTH=962
Length=962
Score = 1338 bits (724), Expect = 0.0
Identities = 809/848 (95%), Gaps = 14/848 (2%)
Strand=Plus/Plus
Query 1 AAAATCAAAATCTCTCCGACCTCCGAAACTGAGCAGTT----GA-A-AGAGAGATAAATG 54
||||||||||||||||| | || ||||||||||||||| || | ||||||||| |||
Sbjct 1 AAAATCAAAATCTCTCCAATCTTCGAAACTGAGCAGTTGAGAGAGAGAGAGAGATAGATG 60
Query 55 GCGGCGAAGACGATGAGGAAGGCGGAGGAGCTGGTGGAGAAGGCGATGAAAGGAAACGAT 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGGCGAAGACGATGAGGAAGGCGGAGGAGCTGGTGGAGAAGGCGATGAAAGGAAACGAT 120
Query 115 GCTTCTCATGACGCCTGGCACGTGTGGAGGGTCCGAGACCTTGCTCTCTCCATTGCTCGC 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTCTCATGACGCCTGGCACGTGTGGAGGGTCCGAGACCTTGCTCTCTCCATTGCTCGC 180
Query 175 GAGGAAGGTCTCTCTTCCAACTCCGACTCCATGGAAATTGTGGAACTTGCAGCTCTTCTT 234
|||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 181 GAGGAAGGTCTCTCTTCCAATTCTGACTCCATGGAAATTGTGGAGCTTGCAGCTCTTCTC 240
Query 235 CATGATATAGGTGACTACAAGTACATGAGAGACCCTTCGGAAGTGAAACTTGTTGAGAAT 294
|||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 241 CATGATATAGGTGATTACAAGTACATAAGAGACCCTTCGGAAGAGAAACTTGTTGAGAAT 300
Query 295 TTCCTAGATGAGGAGGGTATAGAAGAGACCAAGAAGACGAAGATACTAACGATCATCAAT 354
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCCTAGATGATGAGGGTATAGAAGAGACCAAGAAGACGAAGATACTAACGATCATCAAT 360
Query 355 GGAATGGGTTTTAAAGACGAATTAGCAGGATTAGCACTCTGCGAATCTCTTCCAGAATTT 414
|||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 361 GGAATGGGTTTTAAAGACGAATTAGCAGGAGTAGCACTCTGTGAGTCTCTTCCAGAATTT 420
Query 415 GGGGTAGTTCAAGATGCTGACCGCCTTGATGCAATTGGCGCCATAGGAATTGCTCGTTGC 474
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGGGTAGTTCAAGATGCTGATCGCCTTGATGCAATTGGCGCCATAGGAATTGCTCGTTGC 480
Query 475 TTTACATTTGGTGGAAGCAGGAACAGAGTGCTTCATGATCCTGAGATCAAGCCCCGGACA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTACATTTGGTGGAAGCAGGAACAGAGTGCTTCATGATCCTGAGATCAAGCCCCGGACA 540
Query 535 GAGCTAACCAAAGAGCAGTACATTAAGAGAGAGGAGCAAACTACAATTAATCACTTTCAT 594
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GAGCTAACCAAAGAGCAGTACATTAAGAGAGAGGAGCAAACTACTATTAATCACTTTCAT 600
Query 595 GAGAAACTCCTCAAGCTAAAGAAGCTGATGAAAACTGAGGCGGGTAGAAGGAGGGCAGAG 654
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 GAGAAACTCCTCAAGCTAAAGAAGCTGATGAAAACTGAGGCGGGTAAAAGGAGGGCAGAG 660
Query 655 AAAAGGCACAAGTTCATGGAAGAGTATCTTAAGGAGTTCTATGAAGAGTGGGATGGGTCA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAAGGCACAAGTTCATGGAAGAGTATCTTAAGGAGTTCTATGAAGAGTGGGATGGGTCA 720
Query 715 ACTTGAAAAGATAAGAATGATGCATGAAGAAGAAAAGCAGAGG-TTGTGTTCAACCCGG- 772
|||||||||| ||| |||||| |||||| ||||||||||||| || ||||||||| ||
Sbjct 721 ACTTGAAAAGTTAAAAATGATAAATGAAGCAGAAAAGCAGAGGATT-TGTTCAACC-GGA 778
Query 773 TTTAATTG--TAAG-ATGTACCTACCAAACCAATATGTGGTTTAGGTTTAAAACAGAGTG 829
||| |||| |||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 779 TTTTATTGAGTAAGCA-GTACCTACCAAACCAATATGTGGTTTAGGTTTTAAACAGAGTG 837
Query 830 GCAACTCT 837
||||||||
Sbjct 838 GCAACTCT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5