BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471937
Length=2820
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17340.1 | Symbols: | Phosphoinositide phosphatase family p... 4259 0.0
> AT1G17340.1 | Symbols: | Phosphoinositide phosphatase family
protein | chr1:5933870-5938761 FORWARD LENGTH=2987
Length=2987
Score = 4259 bits (2306), Expect = 0.0
Identities = 2606/2751 (95%), Gaps = 20/2751 (1%)
Strand=Plus/Plus
Query 43 AATCGTCTTCGTCGTTGTTATCTCCATCTCCAGAATTCGGAAATTTTCTGGGAATTTCCA 102
||||||||| ||||| |||| ||||| ||||||||||| |||| ||||||||||| || |
Sbjct 65 AATCGTCTTTGTCGTCGTTACCTCCACCTCCAGAATTCCGAAA-TTTCTGGGAATATCGA 123
Query 103 TTTTGATCTCTATTTCCTCACGCTCTTATTTTCTCTGTCTGCTCGGCTGTTTCTCTGTAT 162
||||||| |||||||| ||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 124 TTTTGATTTCTATTTCTTCACGCTCTAATTTACTC-GTCTGCTCGGCTGTTTCTCTGTAT 182
Query 163 CGACTGATTCAGGGAAAAT-CGGGGTCAAACCGGCTCTGAGCTATCCCTTCAGGTTCGAA 221
| ||||||| | |||| |||||||||||||| |||||||||| || |||||||| |
Sbjct 183 TGGCTGATTC---G-AAATCCGGGGTCAAACCGGGTCTGAGCTAT--CTCCAGGTTCGGA 236
Query 222 ATTTACAGAtttttttCTGGTCTGATGGGATCAGAGCCTCGGTTCGAACCGAGGCCCGAA 281
||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 237 ATTTACAGA-TTTTATCTGGTCTGATGGGATCAGAGCCTCGGTTCGAGCCGAGGCCGGAA 295
Query 282 CTGATTGACTTACCCGTTCTTCAGAAATTCAAGCTCTACGCTACTCCCTCGAATTTTTAT 341
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGATTGACTTGCCTGTTCTTCAGAAATTCAAGCTCTACGCTACTCCCTCGAATTTTTAT 355
Query 342 TTGATTGGAAGAGATGAGAACAAAAGCTTTAGGCGGATTCTTAAGATTGATCGAAGGGAC 401
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 356 TTGATTGGAAGAGATGAGAACAAAAGCTTTAGGAGGATTCTTAAGATTGATAGAAGGGAC 415
Query 402 CAAAACGAGTTAAATTTGTTTGAAGATCCTACAAGGTATACAAAAGATGAAATGCGCGAA 461
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 416 CAAAATGAGTTAAATTTATTTGAAGATCCTACAAGGTATACAAAAGACGAAATGCGCGAA 475
Query 462 CTGAAAAGGCGGATGATTGTAGGGAACGAGGAGTCTGGTGGGTTTAAAGCAATCACAACT 521
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 CTTAAAAGACGGATGATTGTAGGGAACGAGGAGTCTGGTGGCTTTAAAGCAATCACAACT 535
Query 522 TGCTATGGAATCATTGGGTTTGTGAGATTCTTGGAGCCTTATTACATGCTGGTGATAACA 581
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 536 TGCTATGGAATCATTGGGTTTGTGAGATTCTTGGAGCCTTATTATATGCTGCTGATAACA 595
Query 582 AAAAGAAAGAAAGTGGGTGAGATCTGCGGCCATACAGTTTATGGTATAGCTGAGAGTCAA 641
||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 596 AAACGAAAGAAAGTGGGTGAGATCTGTGGCCATACAGTTTATGGTATAGCAGAGAGTCAA 655
Query 642 ATGATCGCGATTCCACATCCTTCCATTCAGA-CAAAAGTGGCTAAGTCTGAAGCCGAGCA 700
||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 656 ATGATCGCGATTCCACATCCTTCAATTCA-ATCAAAAGTGGCTAAGTCTGAAGCCGAGCT 714
Query 701 AAGGTACAAGAAGCTCCTAAGCGTGGTGGATCTTAGCAAAAACTTCTACTTCAGCTACAC 760
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GAGGTACAAGAAGCTCTTAAGCGTGGTGGATCTTAGCAAAAACTTCTACTTCAGCTACAC 774
Query 761 ATATCACCTCATGTATTGCCTTCAGAAGAACATAGGCAACACTGAGAGAGGAAACGCTCA 820
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 775 ATATCACCTCATGTATTCCCTTCAGAAGAACATAGGCAACACTGAGAGAGGAAACCCTCA 834
Query 821 TGACAACACAATGTTTGTGTGGAACTCCTTCTTAACACGCGAGATCAGAAAGATCCTGCA 880
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TGACAACACAATGTTCGTGTGGAACTCCTTCTTAACACGCGAGATCAGAAAGATCCTGCA 894
Query 881 GAATTCCATATGGACAGTTGCATTGGTATACGGATTCTTTCAACAGACTAAATGTTCAGT 940
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 895 GAATTCCATATGGACAGTTGCATTGATATACGGATTCTTTCAACAGACTAAATGTTCAGT 954
Query 941 ATCTGGTGAGGATTTTGTCTTCACTATCATTGCTCGGCGTTCACGGCATTATGCGGGTAC 1000
||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 955 ATCTGGTGAAAAATTTGTATTCACTATCATTGCTCGGCGTTCACGGCATTATGCTGGTAC 1014
Query 1001 AAGATATTTAAGGCGTGGTGTAAATGATATAGGCAGAGTAGCCAATGATGTTGAGACGGA 1060
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1015 AAGATATTTAAGGCGTGGTGTAAATGATATAGGCAGGGTAGCCAATGATGTTGAGACAGA 1074
Query 1061 GCAGATTGTTTCCAAAGTGGTTCCTGCGGGTCAGAAAATCCCGATAACATCAGTTGTGCA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GCAGATTGTTTCCAAAGTGGTTCCTGCGGGTCAGAAAATCCCGATAACATCAGTTGTGCA 1134
Query 1121 GATTCGAGGCTCCATACCCCTATTTTGGTCACAGGAGGCATCTGTTTTCAACCCACAGCC 1180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGTTCGAGGCTCCATACCCCTATTTTGGTCACAGGAGGCATCTGTTTTCAACCCACAGCC 1194
Query 1181 CGAGATTATATTGAATAAGAAGGACGCAAATTATGTGGCTACCCAACACCACTTTGAGAA 1240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1195 CGAGATTATATTGAATAAGAAGGACGCAAATTATGAGGCTACCCAACACCACTTTCAGAA 1254
Query 1241 TCTGAGACAGAGGTATGGGAACCGGATAATAATTCTGAACCTCCTAAAGACTGAGACAGG 1300
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1255 TCTGAGACAGAGGTATGGGAACCGGATAATAATTCTCAACCTCCTAAAGACTGTGACAGG 1314
Query 1301 TGAGAAAAAGCATCGAGAAACCATCTTAAGGTCAGAGTTTGCAAAGACAATCCGCTTTAT 1360
|||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1315 TGAGAAAAAGCACCGAGAAACCATCTTAAGGGGAGAGTTTGCAAAGACAATCCGATTTAT 1374
Query 1361 TAACAAAGGCATGGACAAGGAGAATCGTTTAAAGGCAATCCATTTTGATCTAAGCAAACA 1420
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1375 TAACAAAGGCATGGACAGGGAGCATCGTTTAAAGGCAATCCATTTTGATCTAAGCAAACA 1434
Query 1421 CTACAAAAAAGGAGCTGATGGTGCATTCAACCACTTGTGTATCTTTGCAAGGAAAGCATT 1480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1435 CTACAAAAAAGGAGCTGATGGTGCATTCAACCACTTGTGTATCTTTTCAAGGAAATCATT 1494
Query 1481 GGAATTAACTGACCTGTTTTACTGTAAAGCTCCTTCAGGTGTAGGAGCTGAAGGAGTCAT 1540
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1495 GGAACTAACTGACCTGTTTTACTGTAAAGCTCCTTCAGGTGTAGGAGCTGAAGAAGTAAT 1554
Query 1541 TTATGATTCATTTTTCAATAACCCTATTCCAAGTCAAGATGAAGAGGCGGGTAGTCCAGA 1600
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1555 TTATGATTCATTTTTCAATAACCCTATTCCAAGTCAAGATGAAGAGGCAAGTAGTCCAGA 1614
Query 1601 TAAAGAAGCTTTGAAGGCGGATATATTTATGCTTCAAAATGGGGTCTTGAGGACAAACTG 1660
||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1615 AAAAGAAGATATGAAGGCGGATATATTTCTGCTTCAAAATGGGGTCTTGAGGACAAACTG 1674
Query 1661 CATAGACTGTCTGGATCGCACCAATTTTGCGCAGTACGCCCACGGATTGGTAGCTCTTGG 1720
|||||||||| | |||||||| ||||||||||||||||||||||||||||| |||| ||
Sbjct 1675 CATAGACTGTTTAGATCGCACTAATTTTGCGCAGTACGCCCACGGATTGGTTTCTCTCGG 1734
Query 1721 GCATCAGCTGCGTACATTGGGTATCTCAGGACCTCCTGTCGTTGATCTTAATAATCCTCT 1780
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1735 GCATCAGCTGCGTACATTAGGTATCTCAGGACCTCCTGTCGTCGATCTTAATAATCCTCT 1794
Query 1781 GGCAATAGAACTGATGGACGCTTACCAAAAGATGGGTAATACACTTGCGCTGCAGTATGG 1840
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1795 GGCAATAGAACTGATGGACGCTTACCAAAAGATGGGTAATACACTTGCGATGCAGTATGG 1854
Query 1841 TGGCTCGGAAGCACACAGCAAGATGTTCTGTGATCTGAGAGGTAACTGGAACATGGTGAT 1900
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1855 TGGCTCGGAAGCACACAGCAAGATGTTCTGTGATCTGAGAGGTAATTGGAATATGGTGAT 1914
Query 1901 GAGGCAGCGCGATATCTTCACAGCTGTACGTCGTTACTACAGTAACGCGTATCAAGACAG 1960
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1915 GAGGCAGCGTGATATCTTCACAGCTGTACGTCGTTACTACAGTAACGCGTATCAGGACAG 1974
Query 1961 TGATAAGCAGAACGCCATCAATGTGTTCTTGGGGCATTTCCGGCCTCGATTGGGGAAGCC 2020
||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |||
Sbjct 1975 TGATAAGCAAAACGCCATCAATGTGTTCTTGGGTCATTTCCGGCCTCGACTGGGGAGGCC 2034
Query 2021 AGCACTATGGGAGTTGGATTCTGACCAGCACAACATCGGAAGATCTGGTTCTAACTTGGA 2080
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2035 AGCGCTATGGGAGTTGGATTCTGACCAGCACAACATCGGAAGATCTGGTTCTAACTTAGA 2094
Query 2081 TATTGAAAATATGAGGCCACTAATTAGAAGATCATTTTCCGATAATATTCTTATGGATTG 2140
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 2095 TATCGAAAATATGAGGCCACTAATTAGAAGATCATTTTCCGATAACATTATTATGGACTG 2154
Query 2141 TGATTTGAATCTGGAGGAGCTGGTACGCGAAAATTCTCAGCCTTCTTATGAAGGGTTAAA 2200
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2155 TGATTTGAATCTGGAGGAGCTGGTACGCGAAAATTCTCAGCCTACATATGAAGGGTTAAA 2214
Query 2201 CGGGGGTGTCTCAGGAACCAATTTAGAGTTTCCATTCTATGAAACTGAACCAGCTTCTCT 2260
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2215 CGGGGGTGTCTCAGGAACCAATTTAGAATTTCCATTCTATGAAACTGAACCAGCTTCTCT 2274
Query 2261 AAGCTTCCTCTCGGTTATGCGCAATGAAGATCTTCTCAGAGAAACAGGGTCAGGGCAGAT 2320
|||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 2275 AAGCTTCCTCTCGGTTATGCGCAATGAAGAGCTTATGAGAGAAACAGGGTCAGGGCAGAT 2334
Query 2321 GTTTGAAGGCAGTTCCTCTAATTATGATTCCCACAGGCCCAATGATATACCTGGTTTTGC 2380
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 2335 GTTTCAAGGCAGTTCCTCTAATTCTGATTCCCACAGGCCCAATGATATACCTGGTTTTTC 2394
Query 2381 ACACTCATACGCAACTAAATTCACTCCGGCAGAAGAAATATTTGAACGTGGCAGCTCAAA 2440
||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2395 ACACTCATACGTAACTAAGTTCACGCCGGCAGAAGACATATTTGAACGTGGCAGCTCAAA 2454
Query 2441 GTCTGTTTCGTCAGATAACTTGTTCACCGACCTGGATGAATCCGTCACTTCTTTAACTAA 2500
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2455 GTCTGTTTCGTCAGATAACTTGTTCACCGACCGGGATGAATCCGTCACTTCTTTAACTAA 2514
Query 2501 TACGAACTCCAGTTTTGACTTTCCTATAATTGGTGGTTCCGATTTGCTACCTGGTTTCTC 2560
|||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2515 TACGAACTCCAGTTTTGAGTTTCCTATAATGGGTGGTTCCGATTTACTACCTGGTTTCTC 2574
Query 2561 AAATTATTTCGCTCGATGGGTATTCTCCGCAAGAGCATGGTAAAAGAGGGTTTGGAGAA- 2619
|||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 2575 AAATGCTTTCGCTCGGTGGGTATTCTCCGCAAGAGCATGGTAAA-GAGGGTCTGGAGAAA 2633
Query 2620 GAAAACGAGCCTTGCACGGGAAGGTAACGGTGGTTACTTGGCAGGTACGGCAGGGTTGAA 2679
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2634 GAAAT-GAGCCTTGCACAGGAAGGTAACGGTGGTTACTTGGCAGGTACGGCAGGGTTGAA 2692
Query 2680 CAGTGTCGTAATAACAGGAAA-GTACAGAATAACAGCCACATCTTGTAAATATCCGACTC 2738
||| ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct 2693 CAGAGTCGTAATAACAGGAAAAGCACAGAATAACAGTTACATCTTGTAAATATCCGACTC 2752
Query 2739 A--CCTTTGTAAAGGTCCAGGTTTCTTGtttt-ttttttGTTCCTGTTCTT 2786
| ||||||||||| |||| |||||||||||| |||||| || || |||||
Sbjct 2753 ATACCTTTGTAAAGATCCACGTTTCTTGTTTTCTTTTTTTTTTCT-TTCTT 2802
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 2793 ATATATAGAGGGTTTGGTTTGTTTGTTT 2820
||||||||||||||||||||||||||||
Sbjct 2887 ATATATAGAGGGTTTGGTTTGTTTGTTT 2914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140116271799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5