BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471938
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17345.1 | Symbols: | SAUR-like auxin-responsive protein fa... 830 0.0
> AT1G17345.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:5940423-5941210 FORWARD LENGTH=788
Length=788
Score = 830 bits (449), Expect = 0.0
Identities = 652/740 (88%), Gaps = 53/740 (7%)
Strand=Plus/Plus
Query 1 ACCAAGAAAGTTAGTTTCTCAATTCTTGATTAAACATACACAAAACAATAACCTTAATTT 60
||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct 1 ACCAAGAAAGTTAGTTTCTCAATTCCTGATAAAACATACACAAAACAATAATCTTAATTT 60
Query 61 CAAG-AA--ACTACTATTGTTAAAAATCAGAGATTTTCCCTAGCTAATGGCTATATTCGG 117
|||| || |||||||||| ||||||||||||| ||| | ||||||||||||||||||
Sbjct 61 CAAGAAACTACTACTATTGCTAAAAATCAGAGACTTT--C--GCTAATGGCTATATTCGG 116
Query 118 GAAACTGACAAAGCTCAAATCAGCCATAAAGAAATGGCCTTCCTTGACCAAGAACCACCA 177
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 117 TAAACTGACAAAGCTCAAGTCTGCCATAAAGAAATGGCCTTCCTTGACCAAGAACCACCA 176
Query 178 TTCAACCACCGTGTCTACAGCCTCTACAGCCGCATCCGATGTCTCAAAGTGCGGA-GATC 236
|||||||| ||| ||| |||||||| |||| ||| || |||||||||||| || ||||
Sbjct 177 TTCAACCA---TGTGTACCGCCTCTACCGCCGTATCTGAGGTCTCAAAGTGC-GAGGATC 232
Query 237 TCCATGTGGTTTACGTCGGAAAGTCACGAAGACCTTACATGCTTAGTTCCCACGTCATCG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 TCCATGTGGTTTACGTCGGAAAGTCACGAAGACCTTACATGCTTAGTTCCCACGTCATCG 292
Query 297 CTCATCCGCTTTTCCAAGAACTACTTGATCGGTCTT-TGAGATTCGCCGTTGAACATCAC 355
|||||||||||||||||||||||||||| ||||| | | ||||| || |||| ||||
Sbjct 293 CTCATCCGCTTTTCCAAGAACTACTTGACCGGTCGTCT-AGATTTATCGAAGAACGTCAC 351
Query 356 GATCAAGAGACAGTCTTAGTAGCTTGTGAAGTCGTATTGTTCGAGCACTTGTTATGGATG 415
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 352 GACCAAGAGACCGTCTTAGTAGCTTGCGAAGTCGTATTGTTCGAGCACTTGTTATGGATG 411
Query 416 CTCAAGAACAGTTCCTCTGATCACGGCGATGACGAAGATGATGATGATCGCGAAAGAGGA 475
||||| |||||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 412 CTCAAAAACAGTTCCTCTGATCACGGCGATGA-G--GATGAT------CGCGAAAGAGGA 462
Query 476 TCCGTCGAGGAGTTGGCTGAGTTCTATACTTATTGACGGCGCGATACATATTCTTATAAT 535
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 463 TCCGTCGAGGAGTTGGCTGAGTTCTATACTTATTGACGGCGCGATACATATCC--ATA-T 519
Query 536 ATATACTTT-ATTTCGTTAATTTTGGAATT-GATTCGACATGATC-AA-A-TGCGGTCAT 590
||| |||| |||||||||||||||||||| |||||||||||||| || | |||||||||
Sbjct 520 ATA--CTTTTATTTCGTTAATTTTGGAATTTGATTCGACATGATCCAATAATGCGGTCAT 577
Query 591 GCACAAACCATTTCCTTTGCTTTTGTT---C-----A--AA-TTTTTAGAATTA----GT 635
||||| ||||||| ||||||||||||| | | || |||||||| ||| ||
Sbjct 578 GCACAGACCATTTTCTTTGCTTTTGTTTTTCTCCCGAGCAAATTTTTAGAGTTAACTAGT 637
Query 636 ACTCTTTAACTAATAGTATAATTATGTCGGACGAAAGAGGGTAGT-G-ATCTTTGCCT-A 692
| ||||||||||||| |||||||||||||| |||||||||||||| | ||||| ||| |
Sbjct 638 AATCTTTAACTAATATTATAATTATGTCGGTCGAAAGAGGGTAGTAGTATCTT-GCCCCA 696
Query 693 A-TGATGATAAATCGTAACA 711
| ||||||||||| ||||||
Sbjct 697 AATGATGATAAATTGTAACA 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5