BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471939
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17350.2 | Symbols: | NADH:ubiquinone oxidoreductase interm... 1055 0.0
AT1G72420.1 | Symbols: | NADH:ubiquinone oxidoreductase interm... 632 2e-180
> AT1G17350.2 | Symbols: | NADH:ubiquinone oxidoreductase intermediate-associated
protein 30 | chr1:5941784-5944463 FORWARD
LENGTH=917
Length=917
Score = 1055 bits (571), Expect = 0.0
Identities = 694/747 (93%), Gaps = 34/747 (5%)
Strand=Plus/Plus
Query 1 TTGACTGTTAATCGGTAAACCGAGGCTGATTGTGCGACGGTCGCGACGGTGACGGCAAAT 60
|||||||||||||||||||| |||||||| | | || ||||||||||||||||||
Sbjct 6 TTGACTGTTAATCGGTAAACAGAGGCTGA-T-T------GT-GCGACGGTGACGGCAAAT 56
Query 61 CCAGTGACTACAGAAGACATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCC 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 CCAGTGACTACAG-AGACATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCG 115
Query 121 ACAAAGAAGGCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 ACAAAGAAGGCTCTTACATGGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATA 175
Query 181 TTTAAGTTCCACTCGAAAGAGGACTTAAAGAAATGGCATCTCTATTCCGATTCTGAATAT 240
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 176 TTTAAGTTCCACTCTAAAGAAGACTTAAAGAAATGGCATCTCTATTCCGACTCTGAATAT 235
Query 241 GGAGGATTATCTTCGGCTTCCTTGGAAATCCCAGATAAAGGAGATGGATCAGATTGCACT 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 236 GGAGGATTATCTTCGGCTTCCTTGGAGATCCCAGATAAAGGAGATGGATCAGATTGCACT 295
Query 301 GGAATTTTCTCGGGGAGCCTATCTGTAGACCTTAGTGAAGGATCAAAATGGAACATCAGT 360
||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 296 GGAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGT 355
Query 361 CGAAGTGGTTTCTGTGGAATGCGCTCAAAGAAGTTTGATGGCTTCATTGATCTCGATGGG 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 356 CGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGTTTGATGGCTTCATTGATCTCGATGGG 415
Query 421 TATGATGCAATAGCCCTGAGGCTCAGAGGAGATGGAAGATGTTATATCTCTACCATCTAT 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 416 TATGATGCAATAGCCCTGAGGATCAGAGGAGATGGAAGATGTTATATCTCTACTATCTAC 475
Query 481 ACCGAAAACTGGGTGAATTCACCGGGACAGTCAGAAGATAACTCGTGGCAAGCTTTTGTT 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACCGAAAACTGGGTGAACTCACCGGGACAGTCAGAAGATAACTCGTGGCAAGCTTTTGTT 535
Query 541 TTTGCTCCAAAGGACAGTTGGTATAC----A-G-C---T---A--A--------GAT-T- 576
|||||||||||||||||||||||||| | | | | | | ||| |
Sbjct 536 TTTGCTCCAAAGGACAGTTGGTATACTGCTAAGGCAAGTCCTACTACTTCTATAGATATT 595
Query 577 CCTCTAGCTCGATACTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATG 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CCTCTAGCTCGATACTTGCCAACATGGAGAGGAAATGTTATAGATGTGGAAATGGAGATG 655
Query 637 AATCCAGGTCGTGTTCTGGGTATGTCATTGTCAGTAAACGCAGAAGGTGGTGCGGTTGGA 696
||||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||
Sbjct 656 AATCCAGGTCGTGTTCTAGGTATGTCACTGTCCGTAAACGCAGAAGGTGGTGCAGTTGGA 715
Query 697 GCTAAATCAGGAGCAGGTGATTTCCGA 723
|||||||||||||||||||||||||||
Sbjct 716 GCTAAATCAGGAGCAGGTGATTTCCGA 742
> AT1G72420.1 | Symbols: | NADH:ubiquinone oxidoreductase intermediate-associated
protein 30 | chr1:27261194-27263669 REVERSE
LENGTH=900
Length=900
Score = 632 bits (342), Expect = 2e-180
Identities = 569/678 (84%), Gaps = 17/678 (3%)
Strand=Plus/Plus
Query 79 ATGTCAAGGTTTCGATCGTTGTTGCAAGCCTCAGTAAATGCCACAAAGAAGGCTCTTACA 138
|||||| ||||| |||| |||| ||||||||| || ||||| |||||||||||||| ||
Sbjct 41 ATGTCACGGTTTAGATCATTGTGGCAAGCCTCGGTGAATGCAACAAAGAAGGCTCTAACG 100
Query 139 T-GGAACGTTGAAGAATGGGTGCCACCTGCAGAGAAGCATATATTTAAGTTCCACTCGAA 197
| ||||| | ||||||||||| || |||| ||||||| |||||| |||||| | || ||
Sbjct 101 TGGGAAC-TCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATTCAAGTTCAATTCAAA 159
Query 198 AGAGGA-CTTAAAGAAATGGCATCTCTATTCCGATTCTGAATATGGAGGATTATCTTCGG 256
||| || ||| |||| |||||| || || || ||||||||||||||||||||||||||||
Sbjct 160 AGAAGACCTT-AAGACATGGCACCTATACTCTGATTCTGAATATGGAGGATTATCTTCGG 218
Query 257 CTTCCTTGGAAATCCCAGATAAAGGAGATGGATCAGATTGCACTGGAATTTTCTCGGGGA 316
|||| |||||||| |||| |||| || |||||||||||| ||| ||||||| ||||
Sbjct 219 CTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTGCAATGGTGTTTTCTCTGGGA 278
Query 317 GCCTATCTGTAGACCTTAGTGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTG 376
||| ||| || | || ||||| ||||||||||| |||| ||| |||||||||||||
Sbjct 279 ACCTCTCTACGGATATGAGGGAAGGTTCAAAATGGAATATCAATCGGAGTGGTTTCTGTG 338
Query 377 GAATGCGCTCAAAGAAGTTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCC 436
||||||| |||||||||||||||||||| ||||||||||| ||||||||| | |||||||
Sbjct 339 GAATGCGGTCAAAGAAGTTTGATGGCTTTATTGATCTCGAAGGGTATGATTCCATAGCCC 398
Query 437 TGAGGCTCAGAGGAGATGGAAGATGTTATATCTCTACCATCTATACCGAAAACTGGGTGA 496
||||||||| |||||||||||| || ||||| ||||| || ||||| || ||||||||||
Sbjct 399 TGAGGCTCAAAGGAGATGGAAGGTGCTATATTTCTACTATATATACTGAGAACTGGGTGA 458
Query 497 ATTCACCGGGACA-GTCAGAAGATAACTCGTGGCAAGCTTTTGTTTTTGCTCCAAAGG-A 554
| || || ||||| | ||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 459 ACTCGCCAGGACAAG-CAGAAGACAACTCATGGCAGGCTTTTGTTTTTGCTCCAAAGGGA 517
Query 555 CAGTTGGTATACAGCTAAGATTCCTCT-AGCTCGATACTTGCCAACATGGAGAGGAAATG 613
| | |||||||||||||| ||||||| | |||| ||||| |||||||||| |||||| |
Sbjct 518 AACT-GGTATACAGCTAAGGTTCCTCTTA-CTCGCTACTTACCAACATGGAAAGGAAACG 575
Query 614 TTATAGATGTGGAAATGGAGATGAATCCAGGTCGTGTTCTGGGTATGTCAT-TGTCAGTA 672
| ||||||| |||||||||||||||||||||| |||| | |||||||| | | || ||
Sbjct 576 TGATAGATGCAGAAATGGAGATGAATCCAGGTCATGTTGTTGGTATGTC-TCTATCCGTT 634
Query 673 AACGCAGAAGGTGGTGCGGTT----GGAGCTAAATCAGGAGCAGGTGATTTCCGAGTAGA 728
|||||| |||| |||| | || |||||||||||||| ||||| ||||||| ||| ||
Sbjct 635 AACGCACAAGGAGGTG-GTTTCATTGGAGCTAAATCAGGCGCAGGCGATTTCCAAGTCGA 693
Query 729 AATTGACTGGATCAAAGC 746
||||||||||||||||||
Sbjct 694 AATTGACTGGATCAAAGC 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5