BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471945 Length=1427 Score E Sequences producing significant alignments: (Bits) Value AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1997 0.0 AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 315 1e-84 > AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:5960481-5962481 REVERSE LENGTH=1477 Length=1477 Score = 1997 bits (1081), Expect = 0.0 Identities = 1353/1474 (92%), Gaps = 60/1474 (4%) Strand=Plus/Plus Query 1 GAACACAAGA-TTACAAGAACAGTTTAGAAGtttttttCTTTCTTAAAATTCTCTCTTTT 59 |||||||| | |||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1 GAACACAA-ACTTACAAGAACAGTTTAAAAGTTTTTTTCTTACTTAAAATTCTCTCTTTT 59 Query 60 AAGTAGTCAAAGTTTGGAACTTGAACACCATCAAATTCATCAATTTTACTCCAACTTGTC 119 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 60 AAGTAGTCAAAGTTTGGAACTTGAACACCATAAAATTCATCAATTTTACTCCAACTTGTC 119 Query 120 TAAAAATCTAATC-CTTTTAAT--CT-TGATATATCAATAACTCGAATTCat--at-a-t 171 ||||||||||||| |||| || || | ||| | |||| || | |||||| || | | Sbjct 120 TAAAAATCTAATCTTTTTTGATCACTATAATA-ACCAAT--CTTG-ATTCATCAATAACT 175 Query 172 --a--t-atataCAT-TA-ATTGATCTCTCTGTTACAGACAATTGTCa-aaaaaaTAGAA 223 | | | | | || || ||||||||||||||||||| ||||||||| |||||| || | Sbjct 176 CGAGTTGAGAAATATATACATTGATCTCTCTGTTACAGTCAATTGTCAGAAAAAA-AG-A 233 Query 224 AACATGAAGTTCTTTGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGC 283 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 234 AACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGC 293 Query 284 ACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAGCCAAGAGAGGAGTTTAGAGACTGG 343 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 294 ACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAACCAAGAGAGGAGTTTAGCGACTGG 353 Query 344 CCTCACGCGTTGCTCGCTATTGGAACGTTTGGTACAACAAGCAATAGTGTGAGCGAAAAC 403 ||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||| Sbjct 354 CCTCACGCGCTGCTTGCTATTGGAACATTCGGTACAACAAGCAATAGTGTGAGCGAAAAC 413 Query 404 GAGAGCAAGAATGTTCATGAGGAGATTGAAGCGGAGAAGAAGTGTACCGCAAAATCCGAA 463 |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| Sbjct 414 GAGAGCAAGAATGTTCATGAAGAGATTGAAGCGGAGAAGAAGTGTACGGCACAATCCGAG 473 Query 464 CAAGAAGAAGAGCCTTCTTCTTCTGTCGATCTTGAAGATTTCACTCCTGAGGAGGTTGGA 523 |||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||| Sbjct 474 CAAGAAGAAGAGCCTTCTTCCTCTGTCAATCTTGAGGATTTCACTCCTGAAGAGGTTGGA 533 Query 524 AAGTTGCAGAAGGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTG 583 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 AAGTTGCAGAAAGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTG 593 Query 584 AATAGAGAGCTCATGAAAAATCTTCCTTTGGATAGATTCTTGAACTGTCCATCGAGTTTA 643 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 594 AATAGAGAGCTCATGAAAAATCTTCCTTTAGATAGATTCTTGAACTGTCCATCGAGTTTA 653 Query 644 GAGGTCGATAGGCGAATCAGCAATGCACTTAGCGCTGTTGTGGATTCGTCTGAGGAGAAT 703 ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 654 GAGGTGGATAGGCGAATCAGCAATGCGCTTAGCGCTGTTGTGGATTCGTCAGAGGAGAAT 713 Query 704 AAGGAGGAAGATATGGAGCGAACGATTAGCGTTATTCTAGGTAGATGCAaagagatatca 763 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 714 AAGGAGGAAGATATGGAGCGAACGATTAACGTTATTCTAGGTAGATGCAAAGAGATATCA 773 Query 764 atagagagtaagaagaataagaagaagagagatataagcaagaCCTCTGTCTCATATCTT 823 |||||||||||||| || |||||||||||||| |||||||||| |||||||||||||||| Sbjct 774 ATAGAGAGTAAGAATAACAAGAAGAAGAGAGACATAAGCAAGAACTCTGTCTCATATCTT 833 Query 824 TTGAAGAAGATTTTCGTCTGCGCAAATGGGATTTCTACAGCCCCAAGCCCTAGCCTGAGA 883 || ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 834 TTCAAGAAGATTTTTGTCTGCGCAGATGGGATTTCTACAGCCCCAAGCCCTAGCTTGAGA 893 Query 884 GACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATT 943 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 894 GACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATT 953 Query 944 AATGCTCAAGCCTCCTCGAAACCAACATCATCGACAACAAAGAGATACTTGgaagacaag 1003 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 954 AATGCTCAAGCCTCCTCGAAACCAACATCATTGACAACAAAGAGATACTTGCAAGACAAG 1013 Query 1004 aaacagctctcattgaagagtgaagaagaagaagaaactagcgaaagaagaagTAGTGGC 1063 |||||||||||| |||||||||| | |||||||||||||||||||||||||||||| || Sbjct 1014 AAACAGCTCTCACTGAAGAGTGA-G--GAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGC 1070 Query 1064 GACGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTTGAGATCTGATCAAAC 1123 || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 1071 GATGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTCGAGATATGATCCAAC 1130 Query 1124 CTTCATCATTCAAGCTCTTGCAAAATCTT-TTCCAAGTACAGGGTAACAAATCTTCTCGA 1182 ||||||||||||||||||||||||||||| ||||||||| || | | |||||||||||| Sbjct 1131 CTTCATCATTCAAGCTCTTGCAAAATCTTCTTCCAAGTATAGATTCA-AAATCTTCTCGA 1189 Query 1183 GAAAATTTAAAGAAATAATGTAATGAGTCTCCCATTTCCGAGGAAATTTTT-G-T---T- 1236 |||||||||||||| ||||| ||||||||||||||||| |||||| ||||| | | | Sbjct 1190 GAAAATTTAAAGAAGTAATG-AATGAGTCTCCCATTTCAGAGGAATTTTTTTGGTGCATC 1248 Query 1237 T-CAGA--A-----TG----TTT--G--T-T----AACTTCTTTTTT-GCATGATTTGAT 1274 | || | | || ||| | | | |||||||||||| |||||||||||| Sbjct 1249 TGCAAATTAAGCCCTGGACGTTTCAGAATGTTTTTAACTTCTTTTTTTGCATGATTTGAT 1308 Query 1275 CTGTGGGAATTTGGGTCCATAGAACCAAAACATGTTCTTGAAATTGCGTACATGTGTAGA 1334 ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1309 CTGTGGGCATTTGTGTCCATAGAACCAAA-CATGTTCTTGAAATTGCGTACATGTGTAGA 1367 Query 1335 TATGTATATGAAATGTCAGAGTG-TATACATACATACATGTGTGCGTGTGATTTGTGTAA 1393 ||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1368 TATGTATATGAGATGTCAGAGTGATATACATACATACCTGTGTGCGTGTGATTTGTGTAA 1427 Query 1394 TTTTAAGGTGGATAACCTCAGCTTATAAAGATTC 1427 |||||||||||||||||||||||||||||||||| Sbjct 1428 TTTTAAGGTGGATAACCTCAGCTTATAAAGATTC 1461 > AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17400.1); Has 75 Blast hits to 75 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27288900-27291042 REVERSE LENGTH=1619 Length=1619 Score = 315 bits (170), Expect = 1e-84 Identities = 513/667 (77%), Gaps = 70/667 (10%) Strand=Plus/Plus Query 471 AAGAGCCTTCTTCTTCTG-TCGATCT---TGAAGATTTCACTCCTGAGGAGGTT-GGAAA 525 |||||| |||||| || | | ||||| |||||||||||||| || || ||| ||||| Sbjct 558 AAGAGCTTTCTTCCTCCGAT-GATCTAGAAGAAGATTTCACTCCCGAAGAAGTTGGGAAA 616 Query 526 GTTGCAGAAGGAGTTGATGAAGCTCTTGTC---AAGAACTAAGAAAAGGAAGTCTGATGT 582 | ||||||||| ||| ||| |||||| | ||| | ||||||||||||||||||||| Sbjct 617 -CTACAGAAGGAGCTGACGAAACTCTTGACGAGAAGGAGTAAGAAAAGGAAGTCTGATGT 675 Query 583 GAATAGAGAGCTCATGAAAAATCTTCCTTTGGATAGATTCTTGAACTGTCCATCGAGT-T 641 |||| |||| | | | |||||||||||||||||||||||||| ||||| |||||| | Sbjct 676 GAATCGAGA-ATTA-G-CGAATCTTCCTTTGGATAGATTCTTGAATTGTCCTTCGAGTCT 732 Query 642 TAGAGGTCGATAGGCGAATCAGCAATGCACTTAGCGCTGTTGTGGATTCGTCTGAGGAGA 701 | ||||||||||| ||||||| | || ||||| |||| || | ||| Sbjct 733 T-GAGGTCGATAGAAGAATCAG---T-AAC---GCGCT-TTGT-GA------T---GAG- 772 Query 702 ATAAGGAGGAAGATATGGAGCGAACGATTAGCGTTATTCTAGGTAGATGCAaagagatat 761 ||||||||||| || ||||| || || || ||||| ||||| |||||||||| || | Sbjct 773 --AAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTATTT 830 Query 762 c-a-atagag--ag--taagaagaataagaagaagagagatataagcaagaCCTCTGTCT 815 | | | |||| || |||| ||| ||||| || |||||| | ||||| |||||||| | Sbjct 831 CTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTGTTT 890 Query 816 CAT-ATCTTTTGAAGAAGAT-TTTCGTCTGCGCA-AATGGGATTTCTACAGCCCCAAGCC 872 | | ||||| | |||||||| ||| ||||| || || || ||||| | | || ||| Sbjct 891 C-TCATCTTCTCAAGAAGATGTTT-GTCTGTACAGAA-GGTTTTTCTCCCGTTCCTCGCC 947 Query 873 CTAGCCTGAGAGACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAG-ATGATGCTC 931 ||| | ||||||||||| |||||||| ||||||||||||||||| || || |||||||| Sbjct 948 CTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTG-AGAATGATGCTA 1006 Query 932 CATAAG-AAGATTAATGCTCAAGCCTCCTCGAAACCAACATCATCGACAACAAAGAGATA 990 || ||| ||| |||| ||||||| || || ||| ||| | ||||||||| ||| | ||| Sbjct 1007 CACAAGAAAG-TTAACACTCAAGCTTCATC-AAAGCAA-A-CATCGACAA-AAA-A-ATA 1059 Query 991 CTTGgaagacaagaaacagctctcattgaagagtgaagaagaagaagaaactagcgaaag 1050 |||| |||||||| |||||||||| ||||||| | || ||||||| | || | | | Sbjct 1060 CTTGCAAGACAAGCAACAGCTCTCGTTGAAGA---ACGAGGAAGAAG--A--AG-G-ACG 1110 Query 1051 aagaagTAGTGGCGACGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTTGA 1110 ||| |||| ||| || ||||||||||||||||||||||||||||| |||||||| Sbjct 1111 AAGCAGTA---ACGATGGGGGGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGA 1167 Query 1111 GATCTGA 1117 ||||||| Sbjct 1168 GATCTGA 1174 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70330963545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5