BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471945
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1997 0.0
AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 315 1e-84
> AT1G17400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G72490.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:5960481-5962481 REVERSE LENGTH=1477
Length=1477
Score = 1997 bits (1081), Expect = 0.0
Identities = 1353/1474 (92%), Gaps = 60/1474 (4%)
Strand=Plus/Plus
Query 1 GAACACAAGA-TTACAAGAACAGTTTAGAAGtttttttCTTTCTTAAAATTCTCTCTTTT 59
|||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1 GAACACAA-ACTTACAAGAACAGTTTAAAAGTTTTTTTCTTACTTAAAATTCTCTCTTTT 59
Query 60 AAGTAGTCAAAGTTTGGAACTTGAACACCATCAAATTCATCAATTTTACTCCAACTTGTC 119
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 60 AAGTAGTCAAAGTTTGGAACTTGAACACCATAAAATTCATCAATTTTACTCCAACTTGTC 119
Query 120 TAAAAATCTAATC-CTTTTAAT--CT-TGATATATCAATAACTCGAATTCat--at-a-t 171
||||||||||||| |||| || || | ||| | |||| || | |||||| || | |
Sbjct 120 TAAAAATCTAATCTTTTTTGATCACTATAATA-ACCAAT--CTTG-ATTCATCAATAACT 175
Query 172 --a--t-atataCAT-TA-ATTGATCTCTCTGTTACAGACAATTGTCa-aaaaaaTAGAA 223
| | | | | || || ||||||||||||||||||| ||||||||| |||||| || |
Sbjct 176 CGAGTTGAGAAATATATACATTGATCTCTCTGTTACAGTCAATTGTCAGAAAAAA-AG-A 233
Query 224 AACATGAAGTTCTTTGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGC 283
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 AACATGAAGTTCTTCGGGTGGATGCAGAACAAGCTTAATGGGGATCATAACAGAACAAGC 293
Query 284 ACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAGCCAAGAGAGGAGTTTAGAGACTGG 343
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 294 ACTTCCTCTGCTTCTTCTCATCATGTGAAGCAAGAACCAAGAGAGGAGTTTAGCGACTGG 353
Query 344 CCTCACGCGTTGCTCGCTATTGGAACGTTTGGTACAACAAGCAATAGTGTGAGCGAAAAC 403
||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 354 CCTCACGCGCTGCTTGCTATTGGAACATTCGGTACAACAAGCAATAGTGTGAGCGAAAAC 413
Query 404 GAGAGCAAGAATGTTCATGAGGAGATTGAAGCGGAGAAGAAGTGTACCGCAAAATCCGAA 463
|||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 414 GAGAGCAAGAATGTTCATGAAGAGATTGAAGCGGAGAAGAAGTGTACGGCACAATCCGAG 473
Query 464 CAAGAAGAAGAGCCTTCTTCTTCTGTCGATCTTGAAGATTTCACTCCTGAGGAGGTTGGA 523
|||||||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||
Sbjct 474 CAAGAAGAAGAGCCTTCTTCCTCTGTCAATCTTGAGGATTTCACTCCTGAAGAGGTTGGA 533
Query 524 AAGTTGCAGAAGGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTG 583
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AAGTTGCAGAAAGAGTTGATGAAGCTCTTGTCAAGAACTAAGAAAAGGAAGTCTGATGTG 593
Query 584 AATAGAGAGCTCATGAAAAATCTTCCTTTGGATAGATTCTTGAACTGTCCATCGAGTTTA 643
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 594 AATAGAGAGCTCATGAAAAATCTTCCTTTAGATAGATTCTTGAACTGTCCATCGAGTTTA 653
Query 644 GAGGTCGATAGGCGAATCAGCAATGCACTTAGCGCTGTTGTGGATTCGTCTGAGGAGAAT 703
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 654 GAGGTGGATAGGCGAATCAGCAATGCGCTTAGCGCTGTTGTGGATTCGTCAGAGGAGAAT 713
Query 704 AAGGAGGAAGATATGGAGCGAACGATTAGCGTTATTCTAGGTAGATGCAaagagatatca 763
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 714 AAGGAGGAAGATATGGAGCGAACGATTAACGTTATTCTAGGTAGATGCAAAGAGATATCA 773
Query 764 atagagagtaagaagaataagaagaagagagatataagcaagaCCTCTGTCTCATATCTT 823
|||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 774 ATAGAGAGTAAGAATAACAAGAAGAAGAGAGACATAAGCAAGAACTCTGTCTCATATCTT 833
Query 824 TTGAAGAAGATTTTCGTCTGCGCAAATGGGATTTCTACAGCCCCAAGCCCTAGCCTGAGA 883
|| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 834 TTCAAGAAGATTTTTGTCTGCGCAGATGGGATTTCTACAGCCCCAAGCCCTAGCTTGAGA 893
Query 884 GACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAGATGATGCTCCATAAGAAGATT 953
Query 944 AATGCTCAAGCCTCCTCGAAACCAACATCATCGACAACAAAGAGATACTTGgaagacaag 1003
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 954 AATGCTCAAGCCTCCTCGAAACCAACATCATTGACAACAAAGAGATACTTGCAAGACAAG 1013
Query 1004 aaacagctctcattgaagagtgaagaagaagaagaaactagcgaaagaagaagTAGTGGC 1063
|||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 1014 AAACAGCTCTCACTGAAGAGTGA-G--GAAGAAGAAACTAGCGAAAGAAGAAGTAGTAGC 1070
Query 1064 GACGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTTGAGATCTGATCAAAC 1123
|| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1071 GATGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTCGAGATATGATCCAAC 1130
Query 1124 CTTCATCATTCAAGCTCTTGCAAAATCTT-TTCCAAGTACAGGGTAACAAATCTTCTCGA 1182
||||||||||||||||||||||||||||| ||||||||| || | | ||||||||||||
Sbjct 1131 CTTCATCATTCAAGCTCTTGCAAAATCTTCTTCCAAGTATAGATTCA-AAATCTTCTCGA 1189
Query 1183 GAAAATTTAAAGAAATAATGTAATGAGTCTCCCATTTCCGAGGAAATTTTT-G-T---T- 1236
|||||||||||||| ||||| ||||||||||||||||| |||||| ||||| | | |
Sbjct 1190 GAAAATTTAAAGAAGTAATG-AATGAGTCTCCCATTTCAGAGGAATTTTTTTGGTGCATC 1248
Query 1237 T-CAGA--A-----TG----TTT--G--T-T----AACTTCTTTTTT-GCATGATTTGAT 1274
| || | | || ||| | | | |||||||||||| ||||||||||||
Sbjct 1249 TGCAAATTAAGCCCTGGACGTTTCAGAATGTTTTTAACTTCTTTTTTTGCATGATTTGAT 1308
Query 1275 CTGTGGGAATTTGGGTCCATAGAACCAAAACATGTTCTTGAAATTGCGTACATGTGTAGA 1334
||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1309 CTGTGGGCATTTGTGTCCATAGAACCAAA-CATGTTCTTGAAATTGCGTACATGTGTAGA 1367
Query 1335 TATGTATATGAAATGTCAGAGTG-TATACATACATACATGTGTGCGTGTGATTTGTGTAA 1393
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1368 TATGTATATGAGATGTCAGAGTGATATACATACATACCTGTGTGCGTGTGATTTGTGTAA 1427
Query 1394 TTTTAAGGTGGATAACCTCAGCTTATAAAGATTC 1427
||||||||||||||||||||||||||||||||||
Sbjct 1428 TTTTAAGGTGGATAACCTCAGCTTATAAAGATTC 1461
> AT1G72490.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G17400.1);
Has 75 Blast hits to 75 proteins in 21 species: Archae - 0;
Bacteria - 0; Metazoa - 3; Fungi - 4; Plants - 58; Viruses
- 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr1:27288900-27291042
REVERSE LENGTH=1619
Length=1619
Score = 315 bits (170), Expect = 1e-84
Identities = 513/667 (77%), Gaps = 70/667 (10%)
Strand=Plus/Plus
Query 471 AAGAGCCTTCTTCTTCTG-TCGATCT---TGAAGATTTCACTCCTGAGGAGGTT-GGAAA 525
|||||| |||||| || | | ||||| |||||||||||||| || || ||| |||||
Sbjct 558 AAGAGCTTTCTTCCTCCGAT-GATCTAGAAGAAGATTTCACTCCCGAAGAAGTTGGGAAA 616
Query 526 GTTGCAGAAGGAGTTGATGAAGCTCTTGTC---AAGAACTAAGAAAAGGAAGTCTGATGT 582
| ||||||||| ||| ||| |||||| | ||| | |||||||||||||||||||||
Sbjct 617 -CTACAGAAGGAGCTGACGAAACTCTTGACGAGAAGGAGTAAGAAAAGGAAGTCTGATGT 675
Query 583 GAATAGAGAGCTCATGAAAAATCTTCCTTTGGATAGATTCTTGAACTGTCCATCGAGT-T 641
|||| |||| | | | |||||||||||||||||||||||||| ||||| |||||| |
Sbjct 676 GAATCGAGA-ATTA-G-CGAATCTTCCTTTGGATAGATTCTTGAATTGTCCTTCGAGTCT 732
Query 642 TAGAGGTCGATAGGCGAATCAGCAATGCACTTAGCGCTGTTGTGGATTCGTCTGAGGAGA 701
| ||||||||||| ||||||| | || ||||| |||| || | |||
Sbjct 733 T-GAGGTCGATAGAAGAATCAG---T-AAC---GCGCT-TTGT-GA------T---GAG- 772
Query 702 ATAAGGAGGAAGATATGGAGCGAACGATTAGCGTTATTCTAGGTAGATGCAaagagatat 761
||||||||||| || ||||| || || || ||||| ||||| |||||||||| || |
Sbjct 773 --AAGGAGGAAGACATTGAGCGTACAATCAGTGTTATCCTAGGGAGATGCAAAGCTATTT 830
Query 762 c-a-atagag--ag--taagaagaataagaagaagagagatataagcaagaCCTCTGTCT 815
| | | |||| || |||| ||| ||||| || |||||| | ||||| |||||||| |
Sbjct 831 CTACAGAGAGCAAGAACAAGACGAAGAAGAATAAAAGAGATTTGAGCAAAACCTCTGTTT 890
Query 816 CAT-ATCTTTTGAAGAAGAT-TTTCGTCTGCGCA-AATGGGATTTCTACAGCCCCAAGCC 872
| | ||||| | |||||||| ||| ||||| || || || ||||| | | || |||
Sbjct 891 C-TCATCTTCTCAAGAAGATGTTT-GTCTGTACAGAA-GGTTTTTCTCCCGTTCCTCGCC 947
Query 873 CTAGCCTGAGAGACACGCTTCAAGAATCAAGAATGGAGAAGTTGTTGAAG-ATGATGCTC 931
||| | ||||||||||| |||||||| ||||||||||||||||| || || ||||||||
Sbjct 948 CTATCTTGAGAGACACGTTTCAAGAAACAAGAATGGAGAAGTTGCTG-AGAATGATGCTA 1006
Query 932 CATAAG-AAGATTAATGCTCAAGCCTCCTCGAAACCAACATCATCGACAACAAAGAGATA 990
|| ||| ||| |||| ||||||| || || ||| ||| | ||||||||| ||| | |||
Sbjct 1007 CACAAGAAAG-TTAACACTCAAGCTTCATC-AAAGCAA-A-CATCGACAA-AAA-A-ATA 1059
Query 991 CTTGgaagacaagaaacagctctcattgaagagtgaagaagaagaagaaactagcgaaag 1050
|||| |||||||| |||||||||| ||||||| | || ||||||| | || | | |
Sbjct 1060 CTTGCAAGACAAGCAACAGCTCTCGTTGAAGA---ACGAGGAAGAAG--A--AG-G-ACG 1110
Query 1051 aagaagTAGTGGCGACGGATATAAATGGGTCAAAACAGATTCTGATTTCATAGTTCTTGA 1110
||| |||| ||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 1111 AAGCAGTA---ACGATGGGGGGAAATGGGTCAAAACAGATTCTGATTTCATTGTTCTTGA 1167
Query 1111 GATCTGA 1117
|||||||
Sbjct 1168 GATCTGA 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70330963545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5