BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471946
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17410.1 | Symbols: | Nucleoside diphosphate kinase family ... 1007 0.0
> AT1G17410.1 | Symbols: | Nucleoside diphosphate kinase family
protein | chr1:5968573-5969975 REVERSE LENGTH=795
Length=795
Score = 1007 bits (545), Expect = 0.0
Identities = 662/718 (92%), Gaps = 10/718 (1%)
Strand=Plus/Plus
Query 1 AAGTCGACGTTATACGCGCGTTTTAAGTGTTTCCCGGCTGGAGGAGCAAACT---CGACA 57
|||||||||||| ||||||| ||| || |||| ||||| ||||||||||||| |||||
Sbjct 32 AAGTCGACGTTAAACGCGCG-TTTCAGAGTTTTCCGGCAGGAGGAGCAAACTCGACGACA 90
Query 58 TTAGAGCTTCTCCGACCACAATTTTCCTCCGGCTTTCAT-AATCTCGGAGTTACATCGTC 116
|| ||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 91 TT--AGCTTCTCCGAACACAATTTTCCTCCGGCTTTCATAAATTTCGGGGTTACATCGTC 148
Query 117 CTAATTCGTCTGATA-GTCACTGAATTTTTGTTTTCCGATCAAGTCAATGTCAGGATTCA 175
||||||||||||||| || | |||||| |||| |||| ||||||||||||||||| |||
Sbjct 149 CTAATTCGTCTGATAGGTTGCCGAATTTGTGTTCTCCGGTCAAGTCAATGTCAGGAATCA 208
Query 176 CATATCAACTAATCTTCCTCCTGCTTCTCGTCTCTATATCCTTGTCGCCGGTCAGGTGTT 235
|||||||| || | |||||||| ||||||| |||| | ||||||||||||||||||||||
Sbjct 209 CATATCAAATATTGTTCCTCCTCCTTCTCGCCTCTGTCTCCTTGTCGCCGGTCAGGTGTT 268
Query 236 TAGGTAATGGAGCAAGTAGTGAAGAGAGAACATTGGCTATGATAAAGCCAGATGGAGTCT 295
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TAGGTTATGGAGCAAGTAGTGAAGAGAGAACATTGGCTATGATAAAGCCAGATGGAGTCT 328
Query 296 CTGGTAACTACACTGACGAAATTAAAA-GAATTGTCGTTGAAGCTAGTTTCAACATCGTC 354
|||||||||| ||||| ||||| |||| || | |||||||| ||| ||||||| ||||||
Sbjct 329 CTGGTAACTATACTGAAGAAATCAAAACGA-TCGTCGTTGAGGCTGGTTTCAATATCGTC 387
Query 355 AAGGAGATGCTTACTCAGCTGGACAAGGACACAGCTTCTGCGTTTTACGACGAGCACTCA 414
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 388 AAGGAGATGCTTACTCAGCTGGACAAGGAGACAGCTTCTGCGTTTTACGAGGAGCACTCA 447
Query 415 TCAAGGAGCTTTTTTCCTCATCTTGTTACATACATGACAAGTGGTCCGGTGTTGGTGATG 474
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 448 TCGAGGAGCTTTTTTCCTCATCTTGTTACATACATGACGAGTGGTCCGGTGTTGGTGATG 507
Query 475 GTATTGGAGAAGCGAAACGCGGTTTCTGATTGGCGTGGTTTAATCGGGCCAACCGATGCG 534
||||||||||||||||| || |||||||||||||||| ||||||||| ||||| ||||||
Sbjct 508 GTATTGGAGAAGCGAAATGCAGTTTCTGATTGGCGTGATTTAATCGGTCCAACAGATGCG 567
Query 535 CAAAAGGCTAAGATATCTCACCCTCACAGCATCAGAGCATTTTGTGGTAAGAACTCACAA 594
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 568 GAAAAGGCTAAGATATCTCACCCTCACAGCATCAGAGCATTATGTGGTAAGAACTCACAG 627
Query 595 AAGAACTGTGTGCACGGCTCGGATTCAACATCATCAGCTGAAAGAGAGATAAAGTTTTTC 654
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 628 AAGAACTGTGTGCACGGCTCGGATTCAACATCGTCAGCTGAAAGAGAGATAAAGTTTTTC 687
Query 655 TTCAAGGATGTTGTTTCAGGTGACATTGCTTCGCAACAACATGACGAACTATAAGAAA 712
||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 688 TTCAAGGATGTAGTTTCAGGTGACATTGCTACACAACAACATGACGAACTATAAGAAA 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5