BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471948
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17430.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1570 0.0
> AT1G17430.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:5982267-5984013 FORWARD LENGTH=1136
Length=1136
Score = 1570 bits (850), Expect = 0.0
Identities = 976/1037 (94%), Gaps = 7/1037 (1%)
Strand=Plus/Plus
Query 1 TTTTCTTGAAAATGGCGTCCATGAAACACGTTCATCTCTTCCGTCGTTACCTCTCAATCG 60
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 33 TTTTCTTAAAAATGGCGTCCATGAAACACGTTCATCTTTTCCGTCGTTATCTCTCAATCG 92
Query 61 TTCTCACTCTCTTTCAAAGCCTAATTTCATGTTTCTTCGATTTTCCGATACTGATCAAAA 120
|| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 93 TTTTCACTCTCTTTCAACGCTTAATTTCATGTTTCTTCGATTTTCCGATACTGATCAAAA 152
Query 121 TCGCAGATTCATTCTTATCTCTGTATTTCTTAGTTTTATGCGATCTCCGACCCGTAACCG 180
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 153 TCGCAGATTCGTTCTTATCTCTGTATTTCTTAGTTTTCTGCGATCTCCGACCCGTAACCG 212
Query 181 TTGATCTAGACGACGGAGAAACCACAGTCAAATTCTGGATCTCCGGCCATCGTAGAATCT 240
| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 213 TCGATCTAGACGACGGAGAAACCACAGTCCATTTCTGGATCTCCGGCCACCGTAGAATCT 272
Query 241 CCCGTCCGAATCTCGTCATGCTCCACGGATACGGAGGAAACTCCAAATGGCAATTCGTTC 300
| || | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 273 CTCGGCAGAATCTCGTCATGCTCCATGGATACGGAGGAAACTCCAAATGGCAATTCGTTC 332
Query 301 ATCAAATCTCCGATCTCTCTAAATCGTTTAATCTCTTCATCCCCGATTTGGTCTTCTTCG 360
||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 333 ATCAAGTCTCGGATCTCTCGAAATCGTTTAATCTCTTCATCCCCGATTTGGTCTTCTTCG 392
Query 361 GAAAATCATATTCGAAGAATCCAGATCGGAGCATTGAGATTCAGGCGAGGAGCATCGTCG 420
||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||||
Sbjct 393 GAAAATCGTATTCGAAGAATAGAGATCGGAGCGTTGAGATTCAGGCGAGGAGCGTCGTCG 452
Query 421 GAGGATTGAAGAAGCTGGGTTGCGTCGAAGGAGGAGGAGGAGGGATCTCGGTTTATTCGA 480
||||||||||||| ||||| ||||| ||||||||||||||| || ||| |||||||||
Sbjct 453 GAGGATTGAAGAAACTGGGATGCGTTGAAGGAGGAGGAGGA---ATATCGATTTATTCGA 509
Query 481 TTAGCTACGGTGGATTTGTGGCGTATAAAATGGCGGAGATTTGGCCGGAGATGGTTGAGA 540
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 510 TTAGTTACGGTGGATTTGTGGCGTATAAAATGGCGGAGATTTGGCCGGCGATGGTTGAGA 569
Query 541 AACTGGTGATTGTGAGCAGTGGAGTGGGATTTACACAGCAACAGAAGACGGCGGAGTTGA 600
|| ||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 570 AATTGGTGATTGTGAGTAGTGGAGTGGGATTTACACAGCAGCAGAAGACGGCAGAATTGA 629
Query 601 AAAAACACGGCGGAGATTGTTCGAAGATTCTT-GTTCCGAAAACTCCAACGGATCTACGG 659
||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||
Sbjct 630 AAAAACACGGCGGAGATTGTTCGAAGATT-TTAGTTCCGAAAACTCCGATGGATCTACGG 688
Query 660 TTGCTGATTAAGATCTCTATGAATACCGGTTTAACGTTCGTCGATTGGGTTCCAGA-TTT 718
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 689 TTGCTGATTAAGATATCTATGAATACTGGTTTAACGTTCGTCGATTGGGTTCCAGACTTT 748
Query 719 TGTCCTCTCCCAATTCATCGCTGTAATGTATGAGAAAAATCGGCAGGAGCTTCTTGAGCT 778
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 T-TCCTTTCCCAATTCATCGCTGTAATGTATGAGAAAAATCGGCAGGAGCTTCTTGAGCT 807
Query 779 AGCTAAGAATTTGTTGGAAAGAGAAGAGGAACCAGAATTGCCTGTAATATCGCAGAGAAC 838
||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||
Sbjct 808 AGCTAAGAATTTGTTGGAACGAGAGGAGGAACCAGAATTGCCTGTAATATCCCAGAAAAC 867
Query 839 ATTAATCGTTTGGGGAGACAAGGACAAGGTCTTTCCATTGGAGCATGCTTATCGGCTGCA 898
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 868 GTTAATCGTTTGGGGAGACAAGGACAAGGTGTTTCCCTTGGAGCATGCTTATCGGCTGCA 927
Query 899 AAGGCATTTACAGAGTTCCAGATTAGAGATAATAAAGGAAACTGGTCACGCTGTTAACAT 958
|||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 928 AAGGCATTTACAGAGTTCAAGATTAGAGATAATAAAGGAAACAGGACACGCTGTTAACAT 987
Query 959 TGAAGCACCAACTACTCTTAATAATTTAATTACTTCGTTTGTTTTAAGTGTTTGATTTCT 1018
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 988 TGAAGCACCAACTACTCTTAATAATTTTATTACTTCGTTTGTCTTAAGTGCTTGATTTCT 1047
Query 1019 ATTTTTGTATATACTTC 1035
|||||||||||||||||
Sbjct 1048 ATTTTTGTATATACTTC 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5