BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471952
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17455.1 | Symbols: ELF4-L4 | ELF4-like 4 | chr1:5997180-599... 913 0.0
AT1G72630.1 | Symbols: ELF4-L2 | ELF4-like 2 | chr1:27344270-27... 329 2e-89
> AT1G17455.1 | Symbols: ELF4-L4 | ELF4-like 4 | chr1:5997180-5998475
FORWARD LENGTH=810
Length=810
Score = 913 bits (494), Expect = 0.0
Identities = 694/778 (89%), Gaps = 63/778 (8%)
Strand=Plus/Plus
Query 1 ATTAGGTTGGCTCAAATATCTCTGTCTCAAAAGACAAGTAGATTCCTTTTTATTT--A-- 56
||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 42 ATTAGCTTCGCTCAAATATCTCTGTCTCAAAAGACAAGTAGATTCCTTTTT-TTTACAGT 100
Query 57 A-CCAGTAATTGTTATCATACCCTATAAATTATCGGTGAAAAAGAAGGATTCTTTGTTTG 115
| ||| ||| | || | | | | ||||||| |||||||||||||||||||||||||||||
Sbjct 101 ATCCAATAA-T-TTGT-A-ATCATATAAATAATCGGTGAAAAAGAAGGATTCTTTGTTTG 156
Query 116 TTTCCCGAGAAAATAAACTCGATTTCCATCTCCTATCTGTCATCGGAGCTTTTTTCCTTT 175
||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 157 TTTCCCGAGAAAATATCCTCGATTTCCATCTCCTATCTGTCATCGGAG--------CTTT 208
Query 176 CTACTTCACAAGGTAAGGAAGGAATAAAAGATCAGTCAAGAGTTTGATCTTGGTT-GAAA 234
||||||| | | |||| | | |||| ||||| |||||||||||||||| ||| |||
Sbjct 209 CTACTTC-C---G-AAGG-A-G--TAAAGGATCAATCAAGAGTTTGATCTT-GTTAGAAT 258
Query 235 AACCGAGAATGGAAGGCGATGTGTTGTCAGGATTTGGAGACAGACACAATATGGATGGGA 294
| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 AGCCGATAATGGAAGGAGATGTGTTGTCAGGATTTGGAGACAGACACAATATGGATGGGA 318
Query 295 AATTGTTGCAGAGTTTCCAGAAGAGCTTTGTGGATGTTCAAGACATTTTGGACCAAAACC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AATTGTTGCAGAGTTTCCAGAAGAGCTTTGTGGATGTTCAAGACATTTTGGACCAAAACC 378
Query 355 GATTATTGATCAACGAGATCAATCAGAACCATGAATCGAAACAACCCGATAACTTGGGTC 414
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 379 GATTATTGATCAACGAGATCAATCAGAACCATGAATCGAAACAACCAGATAACTTGGGTC 438
Query 415 GAAACGTGGGGTTGATCAAAGAGCTCAACAACAATATCAGAAGAGTAGCTAGCCTTTACG 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 439 GAAACGTGGGGTTGATCAAAGAGCTCAACAACAATATCAGAAGAGTAGCTAGCCTTTATG 498
Query 475 GTGATCTCTCTCATTCTTTTGCAAGATCAGTGGATGCTTCATCAGAAGGTGAATCTAGTG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GTGATCTCTCTCATTCTTTTGCAAGATCAGTGGATGCTTCATCAGAAGGTGAATCTAGTG 558
Query 535 GAACTTTGAAATCTGATGGGAAAGCTAACCAGAAGAGATTTAGATCCGGTTAGTATTGTA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GAACTTTGAAATCTGATGGGAAAGCTAACCAGAAGAGATTTAGATCCGGTTAGTATTGTA 618
Query 595 ACCAAGA---CCA------TCAAAGTTTATTATCATAGATTCATATTCAGA----G--CT 639
||||||| ||| |||||||| ||||||||||||||||||||||| | ||
Sbjct 619 ACCAAGAGGTCCAAGACCATCAAAGTTGATTATCATAGATTCATATTCAGATTCAGAGCT 678
Query 640 AATTGATTGACGA-A--GGAGA--G-----TTTTACAAATGTAATATCTCTGTTGAAATG 689
|||||||||| || | ||||| | ||||||||||||||||||||| ||||||||
Sbjct 679 AATTGATTGAGGAGAAAGGAGAAAGGAGAGTTTTACAAATGTAATATCTCTATTGAAATG 738
Query 690 AAAGTTGAGAGTCTTTACAAATTGAATAAACTTGTTGTAAAGTTTACACATTTCGGTT 747
| || ||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 739 A---TTAAGAGTCTTTACAA---GAA-A--CTTGTTGTAAAGTTTACACATTTCGGTT 787
> AT1G72630.1 | Symbols: ELF4-L2 | ELF4-like 2 | chr1:27344270-27345576
FORWARD LENGTH=896
Length=896
Score = 329 bits (178), Expect = 2e-89
Identities = 301/359 (84%), Gaps = 13/359 (4%)
Strand=Plus/Plus
Query 240 AGAATGGAAGGCGATGTGT-TGTCAGGATTTGGAGACAGACA-CAATATGGATGGGAAAT 297
||||||||||| ||||||| | || ||||||||||| ||| | ||| |||||||| || |
Sbjct 317 AGAATGGAAGGAGATGTGTAT-TCTGGATTTGGAGAGAGATACCAA-ATGGATGGTAAGT 374
Query 298 TGTTGCAGAGTTTCCAGAAGAGCTTTGTGGATGTTCAAGACATT-TTGGACCAAAACC-G 355
||||||||| |||||||||||||||||| | |||||||||||| || || || |||| |
Sbjct 375 TGTTGCAGAATTTCCAGAAGAGCTTTGTTCAAGTTCAAGACATTCTT-GATCAGAACCGG 433
Query 356 ATTATTGATCAACGAGATCAATCAGAACCATGAATCGAAACAACCCGATAACTTGGGTCG 415
|| ||||||||||||||||||||||||||||| ||||||||| | ||| ||||||| |
Sbjct 434 CTT-TTGATCAACGAGATCAATCAGAACCATGAGTCGAAACAAGCTGATCACTTGGGAAG 492
Query 416 AAACGTGGGGTTGATCAA-AGAGCTCAACAACAATATCAGAAGAGTAGCTAGCCTTTACG 474
||| || || ||||| || ||||||||| ||||||||||||| || || || ||||| |
Sbjct 493 AAATGTTGGTTTGAT-AAGAGAGCTCAATAACAATATCAGAACTGTTGCAAGTCTTTATG 551
Query 475 GTGATCTCTCTCATTCTTTTGCAAGATCAGTGGATGCTTCATCAGAAGGTGAATCTAGTG 534
| |||||||||||||||||||| ||||| || ||||||||||| ||||| ||||||| |
Sbjct 552 GAGATCTCTCTCATTCTTTTGCTAGATCGGTTGATGCTTCATCGGAAGGCGAATCTACCG 611
Query 535 GAACTTTGAAATCTGATGGGAAAGCTAAC--C-AGAAGAGATTTAGATCCGGTTAGTAT 590
| || ||||||||||| || || || ||| | ||||||||||||||||||| || |||
Sbjct 612 GGACATTGAAATCTGACGGTAAGGCCAACAACCAGAAGAGATTTAGATCCGGGTAATAT 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5