BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471953
Length=2082
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17460.2 | Symbols: TRFL3 | TRF-like 3 | chr1:5998814-600271... 2119 0.0
> AT1G17460.2 | Symbols: TRFL3 | TRF-like 3 | chr1:5998814-6002716
FORWARD LENGTH=2234
Length=2234
Score = 2119 bits (1147), Expect = 0.0
Identities = 1441/1580 (91%), Gaps = 31/1580 (2%)
Strand=Plus/Plus
Query 485 GGCTTATTTCAGTCGGAAACTGCAGAAGCATATACAGAAAATATGAATTCTCAACATGAG 544
||||| ||||||||||||||||||| | | |||||||||||| |||| |||| |||||||
Sbjct 544 GGCTTCTTTCAGTCGGAAACTGCAGGACCGTATACAGAAAATTTGAACTCTCGACATGAG 603
Query 545 TCTAAAGAGGAATTGATGTATGGAACTCAGATGCTTTTTGCTCTTCCGGATACCAAATTT 604
|||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 604 TCTAAAGAGGAATTGATGAATGGATCTCAGATGCTTTTTGTTCTTCCGGATACCAAATTT 663
Query 605 CAAATTTCTAATGAGCTGCCTGGGAATGTGGAGCAAGTCCAATCCGAAGTTTTGCTGCCG 664
|| ||||||| ||||||| ||||||||||||||| ||||| |||| |||||||||||| |
Sbjct 664 CAGATTTCTACTGAGCTGTCTGGGAATGTGGAGCTAGTCCCATCCAAAGTTTTGCTGCAG 723
Query 665 GAACCAATTCTTTTTTCATCAAATCGATGCAGTATGAATCAATCTACGGATGACTTATAT 724
|||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||
Sbjct 724 GAACCAATTCTTTTTTCATCAAATGGATGCAGTATTAATCAATCTACGGATGTCTTAAAT 783
Query 725 GCTACGGGTAGTCCTAAAGAACCTAAAGAAGCTGCATTGTCAACTGCTGCCCCGAAACCT 784
||||| || || || ||||||||| |||||||||||||||||||| | ||||||
Sbjct 784 GCTAC----AG--CT--AG-TCCTAAAGAACCTGCATTGTCAACTGCTGCCTCAAAACCT 834
Query 785 GAAGTTTCTAGAGTAGCAGGCGAGATATGCTTGGATAATCTTTCAATTAGAGCATTACAA 844
|| ||||||||||| ||||||||||| |||||| |||||||||||||| || |||||||
Sbjct 835 GATTTTTCTAGAGTACCAGGCGAGATAAGCTTGGCTAATCTTTCAATTAAAGAATTACAA 894
Query 845 GAAACATCCAGGGCCACGTTTGGTCGCGAAACTACTTGC-AAGGACAATCGATGGCTCAA 903
||||| | ||| |||||||||||||| |||||||||| | |||||||| |||||||||||
Sbjct 895 GAAACTTTCAGAGCCACGTTTGGTCGTGAAACTACTT-CTAAGGACAAACGATGGCTCAA 953
Query 904 AAGGAGAATCACAATGGGACTGATTAATTCATGTGTAGTTCCAACAACTAACCTGACAAT 963
||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 954 AAGAAGAATCAAAATGGGACTGATTAATTCATGTGTAGTTCCAACAACTACCCTGACAAT 1013
Query 964 TAATGATAACAAACTGATTGGTGGAGATCAAGATGCAATTGATGCTTTTAGCAAGGATAC 1023
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1014 TAATGATAGCAAACTGATTGGTGGAGATCAAGATGCAATTGATGCTTTTAGCAAGGGTAC 1073
Query 1024 ATTAGATGAAGAAAGAGCTATTGAAAGCAAAGATACACCATCTAGTCCTGACTGCATAAA 1083
| |||||||||||| ||||| |||||||| |||||||||| ||||||||||| |||||||
Sbjct 1074 AGTAGATGAAGAAACAGCTACTGAAAGCATAGATACACCAGCTAGTCCTGACGGCATAAA 1133
Query 1084 GGGGCATTTAGATGATTTTGGGCATACTTCTGTTGAAACTTTTGTGGACTATTATTCTGG 1143
|||||||| | ||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 1134 GGGGCATTCAAATGATTTTGGGCATAGTCCTGTTGAAACTTTTGTGGACCATTATTCTGG 1193
Query 1144 AAACGAAGATTTTGATGGTGAACATAGGTCTGCAAAGAGAGTTAGGAAGCCTACAAGGAG 1203
||||||||||||||| |||||| || |||||||||| ||||| |||||||||||||||||
Sbjct 1194 AAACGAAGATTTTGAAGGTGAAGATGGGTCTGCAAAAAGAGTGAGGAAGCCTACAAGGAG 1253
Query 1204 ATATATTGTAGAAACTTCAGAAACCGGTGAAAGACAACAAAGTGACGAGTCAATGATCCC 1263
|||||||| |||||| | || ||||| |||||||| ||||| ||||||||||||
Sbjct 1254 ATATATTGAAGAAAC--C---AA----TGAAAAACAACAAATTGACGGGTCAATGATCCC 1304
Query 1264 ATCAAAAGAT-CAGAGCTCTATTCAAGCCGTTTCTTCAGGAGGGGGAGTTGTTGTCACCA 1322
||||||||| || ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1305 TTCAAAAGATCCA-AGCTCTATTCAAGCCGTTTCTTCAGAAGGGAGAGTTGTTGTCACCA 1363
Query 1323 GGATGGTATCCCTAGCTGGTTCAAGAATTCAGGTTCCCTATGTTTCTCATGTAAGAAGAA 1382
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1364 GGATGGTATCCCTTGCTGGTTCCAGAATTCAGGTTCCCTATGTTTCTCATGTAAGGAGAA 1423
Query 1383 GCCGTCCAAGAGAAAACATAATGGCTCTCGGGGAATTTCATTCCAAGTCATGGGAGGTGA 1442
| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||
Sbjct 1424 GTCGTCCAAGAGAAAACATAATGGCTCTTGGGGAATTTCGTTCTAAGTCATGGGAGGTGA 1483
Query 1443 AAGCTACTCCAGACAAGGGTAACCTGAATCTAAGCCCATCTCAGTTGAACAATGATGTGA 1502
||||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1484 AAGCTGCTCCAGAGGAGGGTAACCTGAATCTAAGCCCACCTCAGTTGAGCAATGATGTGA 1543
Query 1503 ACCGAGTTCCAGGTGTCAAATCTGCGCCTAGACT-CGTCCAGAAAGAAGTAAGCGACAAG 1561
||||||||||||||||||||||||| ||||| | |||||||||| | ||| |||||
Sbjct 1544 ACCGAGTTCCAGGTGTCAAATCTGCATCTAGA-TGTGTCCAGAAAG-A--AAGTGACAAA 1599
Query 1562 GACCATTTAAAACCAATTTTCACTGATGTGGATCAAGACATGATGGAGCCAGAGCTCTTA 1621
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1600 GACCATTTAAAACCAATTTTCACTGATGTGGATCAAGAGATGATGGAGCCAGAGCTCTTA 1659
Query 1622 GACTCATCTGGAGATAGCTCAGATGATAATTGCGTTGATGTACCAATCACGCAAAGTGCA 1681
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1660 GACTCATCTGGAGATAGCTCAGATGATAATTTCGTTGATGCACCAATCACGCAAAGTGCA 1719
Query 1682 ATTAGAAGGAAGCTTCATCGAGCTTGGAATGTCTCTGAAGTTGAAAAACTAGTCGAAGGT 1741
| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1720 AGTGGAAGGAAGCTTCATCGAGCTTGGACTATCTCTGAAGTTGAAAAACTAGTCGAAGGT 1779
Query 1742 GTGTCCAAATATGGAGTAGGGAAATGGTCTGAGATCAAAAGGCTTTCATTCTCACCATAC 1801
||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 1780 GTGTCCAAATATGGAGTAGGGAAATGGACTGAGATCAAAAAGCTTTCATTTTCACCATAC 1839
Query 1802 ACACATCGTACCTCTGTGGATCTCAAGGACAAATGGCGAAATTTACAAAAAGCAAGTTCT 1861
|| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1840 ACGCATCGTACCACTGTGGATCTCAAGGACAAATGGCGAAATCTACAAAAAGCAAGTTCT 1899
Query 1862 TCAAACAGAATGGGAGGAGGTCTGAAGAAACACGGATCGATGGCTATTCCTAGTCACATT 1921
||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||
Sbjct 1900 TCAAACAGAATGGAAGGAGGTCTGAAGAAACACGGGTCGATGGCCATTCCTACTCACATT 1959
Query 1922 ATGTTGCAGGTAAGAGAGCTTGCTCAGAAACAATCACCAATTTCACCTGTAGAAAGCAAG 1981
|||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||
Sbjct 1960 ATGTTGCAGGTAAGAGAGCTTGCTCAAAAACAATCACCGATTTCACGTGTAGTGAGCAAG 2019
Query 1982 GCTAGAGTGGTGAAGAGATCAAGATCAAGAAACGGTTTCTTGTAGCGTTTATTTTTCTCG 2041
|||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||
Sbjct 2020 GCTAGAGTGGTGAAGAGATCGAGATCAAGAAACGGTTTCTTGTAGCGTTTCTACT-CTCG 2078
Query 2042 TATAAATTTTTTGTAGTTTT 2061
||||||||| ||||||||
Sbjct 2079 TATAAATTT---GTAGTTTT 2095
Score = 641 bits (347), Expect = 0.0
Identities = 445/491 (91%), Gaps = 11/491 (2%)
Strand=Plus/Plus
Query 1 CAAAACaaaaaaaaTTAAAGCAGAACAAAAAAGTTT-CTAAATTTCCAAGCTTTTT-GCT 58
|||||||||||||| ||||||||||||||||||||| | |||| |||||| ||||| |||
Sbjct 1 CAAAACAAAAAAAAATAAAGCAGAACAAAAAAGTTTGC-AAATATCCAAGGTTTTTAGCT 59
Query 59 TAGTCAAGAAGCCTCTCCTCCGAGAACTCTCGCCGATGAAACAACGAGCTCACTGGAAAG 118
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 60 TAGTCAAGAAGCCTCTCCTCCGAGATTTCTCGCCGATGAAACTACGAGCTCACTGGAAAG 119
Query 119 TCTAAAACTTTTGGCTTCCCCGTTCGCGTTCTACTTTCTCTGTTGCATTTGGTAGGTTAG 178
||| | |||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 120 TCT--GATTTTTTTCTTCTCCGTTCCCGTTCTACTTTCTCTGTTGCATTTGGTAGGTTA- 176
Query 179 ACTTCA-GG-AGCAATGTTTGGAAATGTGGAAGGCTATGGAGATATGTTTCAAGACAGTA 236
| | | || | ||||||||||||||||| ||| ||||||||| | ||||||||||||||
Sbjct 177 AAAT-AGGGTAACAATGTTTGGAAATGTGAAAGACTATGGAGAGACGTTTCAAGACAGTA 235
Query 237 TTTTTCAGACAAGAAGCGGTTCACTTTCTTCAACAAATCAAATTGGAAACCGTGTTGCGT 296
||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||| |||
Sbjct 236 TTTTTCAGACAAGAAACGGATCACTTTCCTCAACAAATCAAATTGGAAACCCTGTTACGT 295
Query 297 ACAAGCTTGTGCGGGTTGCAGGAGATGGGACTCTAGTTCCTGCAACTGATGAAGAAATGT 356
|||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||
Sbjct 296 ACAAGCTTGTGCGGGTTGCAGGCGACGGGAGTCTAGTTCCTGCAACTGATGAAGAGATGT 355
Query 357 TGAAGGTCAAGGATTTGCTTGAGAACAACGAGCCTGATATGCCTGTTTTACCAGAGCCTA 416
|| |||||||| ||||||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 356 TGGAGGTCAAGAATTTGCTTGAGAAAAACGAGCAAGATATGCCTGTTTTACCAGATCCTA 415
Query 417 TACAAACTGA-GAAGTACATTCCCGATGAAGGTTCACCTTCTCAGTTTCTGCAGCTAGAA 475
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TACAAACTGAGGAA-TACATTCCCGATGAAGGTTCACCTTCTCAGTTTCTGCAGCTAGAA 474
Query 476 AACTTTGAAGG 486
|| ||||||||
Sbjct 475 AATTTTGAAGG 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103212320520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5