BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471956
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17480.1 | Symbols: IQD7 | IQ-domain 7 | chr1:6006461-600826... 1871 0.0
> AT1G17480.1 | Symbols: IQD7 | IQ-domain 7 | chr1:6006461-6008266
REVERSE LENGTH=1464
Length=1464
Score = 1871 bits (1013), Expect = 0.0
Identities = 1156/1223 (95%), Gaps = 18/1223 (1%)
Strand=Plus/Plus
Query 1 CACAAGCAAATTCCCAGAAACAATCTTTCTGCTTTTCCCACATTGC-AGCTCTAAAGCTT 59
||||| |||||||||||||||||||||| ||||||||||||||| | ||||| |||||||
Sbjct 1 CACAACCAAATTCCCAGAAACAATCTTTTTGCTTTTCCCACATTTCAAGCTCCAAAGCTT 60
Query 60 CGAATTTTTGAATCAATAGCTTCTGAAGTTGTGATCTTTTGT---A---G--------GG 105
||||||||||||||||||||||| ||||||||||| |||||| | | ||
Sbjct 61 CGAATTTTTGAATCAATAGCTTCCGAAGTTGTGAT-TTTTGTAGAATTCGAAAACCAAGG 119
Query 106 TTTCGATTTGAGAAGATGGGTGGGTCAGGAAATTGGATTAGATCACTAATATCTCACAGA 165
| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 120 TCTCGATTTGAGAAGATGGGTGGGTCAGGAAATTGGATTAGATCACTGATATCTAACAGA 179
Query 166 AAACCAGTAAATGATCAGCAGGAGAAGTTAAGTGAGAAGAGCAGCAAGAAGAAATGGAAG 225
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 180 AAACCCGTAAATGATCAGCAGGAGAAGTTAAGTGATAAGAGCAGCAAGAAGAAATGGAAG 239
Query 226 CTTTGGAGGATCTCATCAGAGAGCTTCA-CATCTTCTTCTTTCAAGAGCCGAGGAAGCTA 284
|| |||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 240 CTGTGGAGGATTTCATCGGAGAGCTT-AGCATCTTCTTCTTTCAAGAGCCGAGGAAGCTA 298
Query 285 TGCAGCTTCTTCGTTTGGCTCAGAGCCACCGTCTTTCTCGGCTGACGAGACTTTTACTAC 344
||||||||||||||| || ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 299 TGCAGCTTCTTCGTTAGGTTCAGAGCTACCGTCTTTCTCGGCTGACGAGGCTTTTACTAC 358
Query 345 TGCCATGGCAGCTCTCATTCGAGCTCCTCCAAAGGATTTTTTGATGGTTAAGCGAGAATG 404
||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||
Sbjct 359 GGCCATGGCAGCACTCATTCGAGCTCCTCCTAGGGATTTTTTGATGGTTAAGAGAGAATG 418
Query 405 GGCTTCAACAAGAATCCAGGCTGCTTTTCGTGCTTTCCTGGCAAGACAGGCGTTTAGAGC 464
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 419 GGCTTCAACAAGAATCCAGGCTGCTTTTCGTGCTTTCCTCGCAAGACAGGCGTTTAGAGC 478
Query 465 TCTGAAGGCTGTAGTGAGAATTCAGGCAATTTTTCGTGGAAGACAAGTTAGGAAACAAGC 524
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 479 TCTGAAGGCTGTCGTGAGAATTCAGGCCATTTTTCGTGGCAGACAAGTTAGGAAACAAGC 538
Query 525 AGCCGTTACACTCAGGTGTATGCAAGCTCTCGTTCGTGTTCAGTCTCGTGTAAGAGCTCA 584
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 TGCCGTTACACTCAGGTGTATGCAAGCTCTTGTTCGTGTTCAGTCTCGTGTAAGAGCTCA 598
Query 585 TCGTAGAGCGCCTTCAGACTCTATTGAGCTAAAAGATCCTGTAAAGCAGACTGAGAAGGG 644
||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct 599 TCGTAGAGCGCCTTCTGACTCGCTTGAGCTAAAAGATCCTGTTAAGCAGACCGAGAAGGG 658
Query 645 TTGGTGTGGTAGCCCCAGAAGTATAAAAGAAGTGAAAACGAAGTTACAGATGAAGCAAGA 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTGGTGTGGTAGCCCCAGAAGTATAAAAGAAGTGAAAACGAAGTTACAGATGAAGCAAGA 718
Query 705 AGGGGCTATTAagagagagagagCTATGGTTTATGCGCTCACACATCAGTCGAGGACGTG 764
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGGGGCTATTAAGAGGGAGAGAGCTATGGTTTATGCGCTCACACATCAGTCGAGGACGTG 778
Query 765 TCCAAGTCCAAGCGGAAGAGCGATTACGCATCATGGTTCACGCAAGAGCAGTCCTGGTTG 824
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 779 TCCAAGTCCAAGCGGAAGAGCGATTACGCATCATGGTTTGCGCAAGAGCAGTCCTGGTTG 838
Query 825 GAACTGGTATGAAGATGTTGGGACATTTTCAAGGAAAAGTAGTGAGAGCAGTGTAATATC 884
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 GAACTGGTATGATGATGTTGGGACATTTTCAAGGAAAAGTAGTGAGAGCAGTGTGTTATC 898
Query 885 TGAATATGAAACTGTAAAAGTCAGGAAGAACAATCTTTCTTCAACTAGAGTTCTTGCTAG 944
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 TGAATATGAGACTGTAACAGTCAGGAAGAACAATCTTTCTTCAACTAGAGTTCTTGCCAG 958
Query 945 ACCTCCTCTTCTTCTTCCTCCGGTTTCGTCTGGCACGAGTTATGATTCTTTACACGATGA 1004
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 959 ACCTCCTCTTCTTCTTCCTCCGGTTTCGTCTGGCATGAGTTATGATTCTTTACACGATGA 1018
Query 1005 GACATCAACATCATCGACATCTCAATCACCAGTTGCATTCTCCAGCAGTGTTCTTGATGG 1064
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AACATCAACATCATCGACATCTCAATCACCAGTTGCATTCTCCAGCAGTGTTCTTGATGG 1078
Query 1065 TGGTGGATACTATCGAAAGCCGAGCTATATGAGCCTGACGCAATCTACTCAAGCCAAGCA 1124
|||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1079 TGGTGGGTACTATCGAAAGCCGAGCTACATGAGCCTGACACAATCTACTCAAGCCAAGCA 1138
Query 1125 GAGACAATCAGGATTATCTTGCAACGGAGATGCAAGATGCAGTGCTGGTTCAGACCAGTG 1184
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1139 GAGACAATCAGGATTATCTTGCAACGGAGATGCAAGACGCAGTGCTGGTTCAGACCAGTG 1198
Query 1185 TACTGATCTATACCCACCGGGGA 1207
||||||||||||||| |||||||
Sbjct 1199 TACTGATCTATACCCTCCGGGGA 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61495667625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5