BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471958

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17510.1 | Symbols:  | unknown protein; Has 11 Blast hits to...   625    1e-178


> AT1G17510.1 | Symbols:  | unknown protein; Has 11 Blast hits 
to 11 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:6023504-6024309 REVERSE LENGTH=667
Length=667

 Score =  625 bits (338),  Expect = 1e-178
 Identities = 449/500 (90%), Gaps = 18/500 (4%)
 Strand=Plus/Plus

Query  1    gagagagagagagTGCATAGTCGTGTTTGTCAATGGCGATCAAAGCGGGAAAGGTTTTGA  60
            |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct  67   GAGAGAAAGAGAGTGCATAGTCGTGCTTGTCGATGGCGATCAAAGCGGGAAAGGTGTTGA  126

Query  61   GAACGGCGACTGCGGCGGCGAGGAAGTTCCAACAGAAACAGTTCTCAGGCACATCTTC-G  119
            ||||||||||||| || ||||||||||||||||||||||||||||||| | ||||||| |
Sbjct  127  GAACGGCGACTGCTGCTGCGAGGAAGTTCCAACAGAAACAGTTCTCAGCCTCATCTTCGG  186

Query  120  -G----C---G------CCGGTGTCTCCATCTTCCGGTGTAGGATCATTTCTGGGTATTC  165
             |    |   |      ||||||||||||||||||||||||||| |||||||||||||||
Sbjct  187  CGTTTCCAGAGCCACCACCGGTGTCTCCATCTTCCGGTGTAGGAGCATTTCTGGGTATTC  246

Query  166  CCAAGATTCGTCGCTCGGAATCCGATTTGTTAATCTCCAAGTACATCAGACTTGCCCAGG  225
            ||||||||  |||||||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct  247  CCAAGATTATTCGCTCGGAATCCGATTTATTAGTCTCCAAGTACATCAGAATTGCCCAGG  306

Query  226  GTCGATTGACGAAGAAGGGTGATTTCACAGAGGAGAAGCTTACGAAAATGTTGTCTGGTG  285
            |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct  307  GTCGATTGACGAAGAAGGGTGATTACACAGAGGAGAAGCTAAAGAAAATGTTGTCTGGTG  366

Query  286  AAGACAGGGTAGGGATCGGTGAGACAATGAAGTTACTGGAGGGTCGCAAAACTGGAGTAG  345
            ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||
Sbjct  367  AAGACAGGGTAGGGATCGGTGAGACCATGAAGTTACTCGAGGGTCGCAACACTGGACTAG  426

Query  346  AATCTTCTaaaaaaaCAAACACCGCTCGATCCAAGAAGTAATTCTTCTGTCTCCATCATC  405
             ||||||||||||| ||||| ||| ||||||||| |||| |||| ||||| |||||||||
Sbjct  427  TATCTTCTAAAAAACCAAACTCCGGTCGATCCAAAAAGTGATTCCTCTGTTTCCATCATC  486

Query  406  AAGCTTTTGCACTTCTAGTTTGCAAGttttttttttGTTGGATTTCTTCAACAACTAGTT  465
            ||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||   |||
Sbjct  487  AAGCTTTTGCATTTCTAGTTTGCAAGTTTCTTTCTTGTTGGATTTCTTCTACAA---GTT  543

Query  466  GTTGTATGAATCACAATATA  485
            ||||||||||||||||||||
Sbjct  544  GTTGTATGAATCACAATATA  563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5