BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471960
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17530.1 | Symbols: ATTIM23-1, TIM23-1 | translocase of inne... 1214 0.0
AT1G72750.1 | Symbols: ATTIM23-2, TIM23-2 | translocase inner m... 416 2e-115
> AT1G17530.1 | Symbols: ATTIM23-1, TIM23-1 | translocase of inner
mitochondrial membrane 23 | chr1:6027631-6028506 FORWARD
LENGTH=876
Length=876
Score = 1214 bits (657), Expect = 0.0
Identities = 786/847 (93%), Gaps = 14/847 (2%)
Strand=Plus/Plus
Query 3 TTCTCTCACTCCGGCGTCTCTTTCTCCGTCGCCACCATTCCTAAAACCTCTCCCGTCTTC 62
|||||| |||||| |||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 28 TTCTCTGACTCCGTCGTCTCTTTCTCCGTCGCCACCGTTCCTAAAACGTCTCCCGTCTTC 87
Query 63 CTCTAATGGCGATCAATCATAGCCCCGATAACGAATCCAACGAAAACACGCGTCTTTATC 122
||||||||||||||||| |||| ||||| | |||||| |||||||||| |||||||| |
Sbjct 88 TTCTAATGGCGATCAATCGTAGCTCCGATCATGAATCCGACGAAAACACCCGTCTTTACC 147
Query 123 ATCCTTACCAAAACTACCAGGTCCCGATCAAAGCTCAGTATCTATACAAGCTTCCGACTT 182
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 148 ATCCTTACCAGAACTACCAGGTCCCGATCAAATCTCAGTATCTATACAAGCTTCCGACTT 207
Query 183 CTCCGGAATTTCTCTTCACGGAAGAGTCTCTCAAACAGCGTCGATCATGGGGAGAAAATC 242
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 208 CTCCGGAATTTCTATTCACGGAAGAGTCTCTCAAGCAGCGTCGATCATGGGGAGAAAATC 267
Query 243 TCACTTTCTACACAGGAACGGGTTATCTCGGCGGCTCTGTAGCCGGCGCTGCAGCTGGGA 302
|||||||||||||||| ||||||||||| | ||||||||||||||| ||| |||||||||
Sbjct 268 TCACTTTCTACACAGGGACGGGTTATCTAGCCGGCTCTGTAGCCGGTGCTTCAGCTGGGA 327
Query 303 TCTTCTCCGGTATCAAGAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGA 362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TCTTCTCTGGTATCAAGAGTTTCGAAAATGGAGACACGACGAAGCTGAAAATCAACAGGA 387
Query 363 TTTTGAATTCGTCTGGTCAGGCAGGTCGCACTTGGGGTAATAGGATTGGGATTGTTGGGT 422
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 388 TTTTGAATTCGTCTGGTCAGGCAGGTCGTACTTGGGGTAATAGGGTTGGGATTGTTGGGT 447
Query 423 TGATCTACGCAGGGATTGAGAGTGGTGTTGTGGCGGTAACTGATAAGGATGATGTTTGGA 482
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 448 TGATCTACGCAGGGATTGAGAGTGGTGTGGTGGCGGTAACTGATAAGGACGATGTTTGGA 507
Query 483 CCAGTGTGGTGGCTGGTCTTGGAACGGGAGCGGTCTTTAGGGCAGCACGAGGAGTGAGAT 542
||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 508 CCAGTGTTGTCGCTGGTCTGGGAACTGGAGCGGTCTTTAGGGCAGCACGAGGAGTGAGAT 567
Query 543 CTGCGGCTGTGGCTGGTGCTTTTGGCGGAATTGCGGCTGGTGCGGTTGTGGCGGGGAAGC 602
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 568 CTGCGGCTGTGGCTGGTGCTTTTGGCGGAATTGCGGCTGGTGCAGTTGTGGCGGGGAAGC 627
Query 603 AGGTTTTCAAGCGGTATGCTCACATATGAAGAACCAGAGTG--C-------C--ACCTAT 651
||||||||||||||||||||||||||||||||||| ||||| | | ||||||
Sbjct 628 AGGTTTTCAAGCGGTATGCTCACATATGAAGAACCGGAGTGATCTTTAGAGCCCACCTAT 687
Query 652 ATGGGAAAATCATAAAAATTAGAGCTTTGTTTGGGGTTTCTAGGGTAGAATTCTGGTTTA 711
||||||||||||||||||| | |||||| || ||| ||||||||||||||||||||||||
Sbjct 688 ATGGGAAAATCATAAAAATCAAAGCTTT-TTCGGG-TTTCTAGGGTAGAATTCTGGTTTA 745
Query 712 CGTTTTAGCATAAATTAACCTGCGAACCTTTATTTatatagata-taataataataataa 770
| ||||||| || ||||||||||||||||| |||||| | ||| |||||| ||||||||
Sbjct 746 CATTTTAGCGTATGTTAACCTGCGAACCTTTCTTTATAGATATAATAATAACAATAATAA 805
Query 771 AGGTTTTACCTTTTGGTATTCGAATCTCCATGAGTTCTTGTTTATGATTATGCTAGCTTT 830
||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 806 AGGTTTTACCTTTTGATATTCGAATCTCCATGAGTTATTGCTTATGATCATGCTAGCTTT 865
Query 831 TGTTATA 837
|||||||
Sbjct 866 TGTTATA 872
> AT1G72750.1 | Symbols: ATTIM23-2, TIM23-2 | translocase inner
membrane subunit 23-2 | chr1:27383365-27384524 FORWARD LENGTH=1160
Length=1160
Score = 416 bits (225), Expect = 2e-115
Identities = 441/544 (81%), Gaps = 19/544 (3%)
Strand=Plus/Plus
Query 102 ACGAAAACACGCGTCTTTATC-ATCCTTACCAAAACTACCAGGTCCCGAT---CAAAGCT 157
|||||||||| | ||||| | ||||||||||||||||| | ||||| || |||| ||
Sbjct 247 ACGAAAACACAAGACTTTA-CAATCCTTACCAAAACTACGAAGTCCCAATCAACAAATCT 305
Query 158 CAGTATCTATACAAGCTTCCGACTTCTCCGGAATTTCTCTTCACGGAAGAGTCTCTCAA- 216
||||| || ||||||||||| || || || || |||||||||||||| ||| || | ||
Sbjct 306 CAGTACCTTTACAAGCTTCCTACCTCCCCTGAGTTTCTCTTCACGGAGGAGGCT-TTAAG 364
Query 217 ACAGCGTCGATCATGGGGAGAAAATCTCACTTTCTACACAGGAACGGGTTATCTCGGCGG 276
|| ||| |||| ||||| || ||||||||||||||||| ||||| | ||| ||||| ||
Sbjct 365 GCAACGTAGATCTTGGGGTGAGAATCTCACTTTCTACACCGGAACAGCTTACCTCGGTGG 424
Query 277 CTCTGTAGCCGGCGCTGCAGCTGGGA-TCTTCTCCGGTA-TCAAGAGTTTCGAAAATGGA 334
||| || ||||| ||| | | | ||| || || | || | |||| || |||||| |||
Sbjct 425 CTCCGTTGCCGGAGCTTCTG-TTGGAGTCATCACTGG-AGTCAAAAGCTTCGAATCTGGC 482
Query 335 GACACGACGAAGCTGAAAATCAACAGGATTTTGAATTCGTCTGGTCAGGCAGGTCGCACT 394
||||| || ||||| |||||||||||||| ||||| || |||||||| | ||||| |||
Sbjct 483 GACACTACTAAGCTCAAAATCAACAGGATCTTGAACTCTTCTGGTCAAACTGGTCGAACT 542
Query 395 TGGGGTAATAGGATTGGGATTGTTGGGTTGATCTACGCAGGGATTGAGAGTGGTGTTGTG 454
||||||||| ||||||| || |||| ||| | ||||||||||| ||||||||| |||||
Sbjct 543 TGGGGTAATCGGATTGGTATCATTGGATTGGTTTACGCAGGGATCGAGAGTGGTATTGTG 602
Query 455 GCGGTAACTGATAAG-GATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGAACGGGAGC 513
|| | || ||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 GCTGCCACGGAT-AGAGATGATGTTTGGACCAGTGTGGTGGCTGGTCTTGGAACCGGAGC 661
Query 514 GGTCTT-TAGGGCAGC-ACGAGGAGTGAGATCTGCGGCTGTGGCTGGTGCTTTTGGCGGA 571
|| || ||| || || | |||||||||||||||| ||||| ||||||||| |||| |||
Sbjct 662 TGT-TTGTAGAGCGGCGA-GAGGAGTGAGATCTGCAGCTGTAGCTGGTGCTCTTGGTGGA 719
Query 572 ATTGCGGCTGGTGCGGTTGTGGCGGGGAAGCAGGTTTTCAAGCGGTATGCT-CACATATG 630
|||||||||| || ||||| || |||||||| || | |||||||||| | | ||| ||
Sbjct 720 CTTGCGGCTGGAGCTGTTGTAGCTGGGAAGCAAATTGTGAAGCGGTATG-TGCCCATTTG 778
Query 631 AAGA 634
||||
Sbjct 779 AAGA 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5