BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471961
Length=2578
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17540.1 | Symbols: | Protein kinase protein with adenine n... 3988 0.0
> AT1G17540.1 | Symbols: | Protein kinase protein with adenine
nucleotide alpha hydrolases-like domain | chr1:6029277-6032754
REVERSE LENGTH=2574
Length=2574
Score = 3988 bits (2159), Expect = 0.0
Identities = 2459/2598 (95%), Gaps = 44/2598 (2%)
Strand=Plus/Plus
Query 1 TTCGGTCTCCTTATTTCCTCCTTGTGAGGGT-A---AAAG---G--CCACAATGTCTTTC 51
||||||||||||||||||||||| ||||||| | |||| | ||||||||||||||
Sbjct 1 TTCGGTCTCCTTATTTCCTCCTTCTGAGGGTAATTGAAAGACCGTACCACAATGTCTTTC 60
Query 52 TAGTTTC-CCGAGAAGC-AAAGTGTCCAGCAATCATCTCGAGGGCTGAGAAA-GATGGCT 108
||||||| || |||||| ||||| |||||||||||||||||||||||||||| ||||||
Sbjct 61 TAGTTTCTCC-AGAAGCAAAAGTTTCCAGCAATCATCTCGAGGGCTGAGAAACAATGGCT 119
Query 109 ACAAGAAGACTAAAAGGAAAAGACAGTAAAGCAGTTACCGCCATAGCCATTGATAAGGAT 168
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 120 GCAAGAAGACTCAAAGGAAAAGACAGCAAAGCAGTTACCGCCATAGCCATTGATAAAGAT 179
Query 169 AAGAACAGCCAACACGCTTTGAAATGGGCTGTTGAGAACATCATCATCGATTCTCCAAAC 228
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 AAGAACAGCCAACACGCTTTGAAATGGGCTGTTGAGAATATCATCATCGATTCTCCAAAC 239
Query 229 TGTATCCTTCTCCATGTTCAAACCAAATTGAGAATTGGGGCAGGAGAAAACACAGAAGCT 288
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 240 TGTATCCTTCTCCATGTTCAAACCAAACTGAGATTTGGGGCAGGAGAAAACACAGAAGCA 299
Query 289 CCACATGACAACCAAGAAGAGGCTCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCT 348
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 CCACATGACAACCAAGAAGAGGCGCATCAGTTCTTCCTTCCCTTTAGAGGATTCTGTGCT 359
Query 349 CGGAAAGGGATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCCAGTGCAATT 408
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 360 CGGAAAGGGATTATAGCAACGGAGGTTCTTCTTCACGATATTGACATCTCGAGTGCAATT 419
Query 409 GTTGACTACATCACCAACAATTCCATTTCAAATTTAGTCCTTGGAGCCTCTGCACGAAAT 468
||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||
Sbjct 420 GTTGACTACATCACCAACAATTCCATTTCAAATATAGTCATTGGAGCCTCTGCTCGAAAT 479
Query 469 TCTTTCCTCAAGAAGTTTAAGAGCGCAGATGTGCCAACGACTATGCTTAAAACAACCCCA 528
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||
Sbjct 480 TCTTTCCTCAAGAAGTTTAAGAGCGTAGATGTGCCAACGACTCTGCTTAAAACAACACCA 539
Query 529 GATACATGTGCTGTCTTCATTGTGTCTAAAGGAAAGCTCTTAACAAGCAGATCAGCTAGT 588
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 540 GATACATGTGCTGTCTTCATTGTGTCTAAAGGGAAGCTCTTAACAAGCAGATCAGCGAGT 599
Query 589 CGGCCTCAGACACCTCAAGGTCCTCAGACACCGCAAGGCCCTCATACATCGCAAGGTCCT 648
||||||||||||||||||||||||| ||| | | | | | |||||||||
Sbjct 600 CGGCCTCAGACACCTCAAGGTCCTC--ACA---C---G----C---C-T--CAAGGTCCT 641
Query 649 CTTACACCGCAAGGTCCTCAACACGCTCCTCATCCTTTAAAACATCCCGT-AATGATGTC 707
| ||||| |||| |||||||||| |||||||||||| |||||||||| | |||||||||
Sbjct 642 CAGACACCTCAAGCTCCTCAACACCCTCCTCATCCTTCAAAACATCCC-TCAATGATGTC 700
Query 708 TGATCCTGGCCCAACAAGTTCCACTTCCAGCGAATCCGGAAGGTCACCTCCTGCATTAAA 767
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct 701 TGATCCTGGCCCAACAAGTTCCACTTCCAGTGAATCCGGAAGGTCATCTCCTGCATTGAA 760
Query 768 CGGAGAATTATCTCCACCTACACCTCATTACAAGCAATCTTTCAATAGGAGTTCCATGTC 827
||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 761 CGGAGAATTATCTCCACCTACACCTCATTACAAGCCATCTTTGTATAGGAGTTCTATGTC 820
Query 828 AGAGCTTAGCAATGAATCTCCCAGTGGTCACAGTGCTGAATCAAATGCTAGTTTCTACAG 887
||||||||| ||||||| |||||| | |||||||||||||||||||||||| ||||||||
Sbjct 821 AGAGCTTAGTAATGAATTTCCCAGCGATCACAGTGCTGAATCAAATGCTAGCTTCTACAG 880
Query 888 CATCCTAGGACGATCCACATATGGAGGAAGCTCACACTCTTCCATGTCTGAAATGACTGA 947
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 881 CATCCTAGGACGATCCACATATGGAGGAAGCTCACACTCTTCCATGTCTGAGATAACTGA 940
Query 948 TGGAGAAGAAAGCTTATCAGGGGGCAACATCACTGAACACCAGAATCAAAATCTTGAAGC 1007
|||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 941 TGGAGAGGAAAGCTTATCTGGGGGCAATATCACTGAACACCAGAATCAAAATCTTGAAGC 1000
Query 1008 AGAAGTGAGAAGATTGAGACTCGAATTGCACCAGTTTAATGCTTCCATATGCAGAGAAAG 1067
||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||||
Sbjct 1001 AGAAGTGAGAAGATTGAGATTCGAATTGCAGCAGTTTAATGCTTCCATGTCCAGAGAAAG 1060
Query 1068 TGCCCCTCATCTTCAAGGACCTAGAGCTACCGCCGAAACTGAAAAGCTGGAGGAAGCAAA 1127
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1061 TGCCCCTCATCTTCTAGGACCTAGAGCTACCGCCGAAACTGAAAGGCTGGAGGAAGCAAA 1120
Query 1128 GGCAGCAAGAGAGATGCTTAGGGCATTGTCCGAGATGGATAAGCAAAAAACACAGAGTGC 1187
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 1121 GGCAGCAAGAGAGATGCTTAGGGCATTGTCTGAGATGGACAAGCAAAAAACACAGACTGC 1180
Query 1188 GATCCAAGCAACTGAAATGGCACAACGTCTAGCGGAAATAGAGACCCAGAAGAGACGACT 1247
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GATCCAAGCAACTGAAGTGGCACAACGTCTAGCGGAAATAGAGACCCAGAAGAGACGACT 1240
Query 1248 TGTGGAGATGCAAGCCAAGTTCAAGGAACAGAACATGGCCGATAGTATATCCTACAGACG 1307
||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1241 TGTGGAGATGCAAGCCAGGTTCAAGGAACAGAATATGGCCGATAGTATTTCCTACAGACG 1300
Query 1308 ATATAGCATCAGAGATGTTGAAGGTGCTACCGACGGTTTTTCAGATGCTCTAAAGATTGG 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 ATATAGCATCAGAGATGTTGAAGGTGCTACCGACGGTTTTTCAGATGCTCTAAAGATTGG 1360
Query 1368 GGAAGGAGGGTATGGACCTGTGTATAAAGCCGTTCTTGAAAACACTTCTGTTGCCATCAA 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 GGAAGGAGGGTATGGACCTGTGTATAAAGCCGTTCTTGAAAACACTTCTGTTGCCATCAA 1420
Query 1428 AATCTTGAAGTCAGATGTCTCACAAGGCCTGAAGCAGTTTAACCAAGAGATCGAGGTTCT 1487
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 ACTCTTGAAGTCAGATGTCTCACAAGGCCTGAAGCAGTTTAACCAAGAGATCGAGGTTCT 1480
Query 1488 AAGTTGCATGAGGCACCCTAACATGGTAATCCTCCTCGGTGCTTGTCCCGAATATGGCTG 1547
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1481 AAGTTGCATGAGGCACCCTAACATGGTGATCCTCCTCGGTGCTTGTCCCGAATATGGCTG 1540
Query 1548 CCTTGTGTATGAGTACATGGAAAATGGAACACTAGAAGATCGTCTCTTCTGCAAAGATAA 1607
||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1541 CCTGGTGTATGAGTACATGGAAAATGGAACATTAGAAGATCGTCTCTTTTGCAAAGATAA 1600
Query 1608 TACTCCACCATTATCTTGGAGAGCACGGTTCAGAATCGCTGCTGAGATTGCTACAGGACT 1667
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 TACTCCACCACTATCTTGGAGAGCACGGTTCAGAATCGCTGCTGAGATTGCTACAGGACT 1660
Query 1668 TCTTTTCCTTCATCAGGCCAAACCCGAGCCACTAGTACATCGAGATCTGAAGCCAGCAAA 1727
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1661 TCTTTTCCTTCATCAGGCCAAACCCGAGCCGCTAGTACATCGAGATCTGAAGCCAGCAAA 1720
Query 1728 CATTCTGCTAGACAGATATTTAATTAGCAAAATCAGTGACGTTGGTTTAGCTCGGTTGGT 1787
||||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1721 CATTCTGATAGACAGACATTTCACTAGCAAAATCAGTGACGTTGGTTTAGCTCGGTTGGT 1780
Query 1788 ACCTCCCA-CTGTTGCTGATAGCTTCTCCAATTATCACATGACTGCTGCGGCCGGTACAT 1846
|||| || |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1781 ACCT-GCAGCTGTTGCTGATAGCTTCTCCAACTATCACATGACTGCTGCAGCCGGTACAT 1839
Query 1847 TTTGTTACATCGACCCCGAGTACCAGCAAACGGGAATGCTTGGGGTGAAGTCTGACTTGT 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 TTTGTTACATCGACCCCGAGTACCAGCAAACGGGAATGCTTGGGGTGAAGTCTGACTTGT 1899
Query 1907 ACTCATTTGGTGTGGTGCTTCTGCAAATCATCACAGCGATGCCAGCAATGGGTTTAAGCC 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 ACTCATTTGGTGTGGTGCTTCTGCAAATCATCACAGCGATGCCAGCAATGGGTTTAAGCC 1959
Query 1967 ATAGAGTAGAGAAATCAATTGAGAAGAAGACATTCCGAGAAGTTTTGGATCCAAAAATAT 2026
|||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1960 ATAGAGTAGAGAAAGCAATTGAGAAGAAGAAACTCCGAGAAGTTTTGGATCCAAAAATAT 2019
Query 2027 CAGACTGGCCTGAAGAAGAGACTCTGGTGCTAGCTCAATTGGCTTTGCAGTGCTGCGAGC 2086
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2020 CAGACTGGCCTGAAGAAGAGACAATGGTGCTAGCTCAATTGGCTTTGCAGTGCTGCGAGC 2079
Query 2087 TGCGGAAAAAGGACAGACCTGATCTTGCTTCCGTTCTGTTGCCTGCACTGAGCAAGCTAA 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2080 TGCGGAAAAAGGACAGACCTGATCTTGCTTCCGTTCTGTTGCCTGCACTGAGCAAGCTAA 2139
Query 2147 GAGAGTTTGCAACAGAGAATCATGAAGTACATAACTCCGATAAAACATTTCATGTGTCAC 2206
||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||
Sbjct 2140 GAGAGTTTGCAACAGAGGATCATGAAGTACATAACTCTGATAGAACATTTCATGTGTCAC 2199
Query 2207 GTGCTCAAAATTCGGTTCCTCTTTCCCCAATATCTTCCTCTCAGACAGA---TGATGCTT 2263
||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2200 GTGCTCACAATTTGGTTCCTCTTTCCCCAATATCTTCCTGTCAGACAGAGGATGATGCTT 2259
Query 2264 GGGAAAATCCTTTTGACAGAAAGATTGGAACGTCGACGTAGATCAAAGTGAAGCGACATT 2323
||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2260 GGGAAAATCCTATTGACAGAAAGATTGGAACTTCGACGTAAATCAAAGTGAAGCGACATT 2319
Query 2324 GGCTATCTCTGAGATCCGCGA-AGCACTTGTTCAGTTTAAGCATCCGATGCCATCCCATG 2382
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2320 GGCTATCTCTGAGATCCGCGATAA-ACTTGTTCAGTTTAAGCATCCGATGCCATCCCATA 2378
Query 2383 CCCACCAGAAGAAGGTGATTTACATGATCATAAACAAGCCAATGCAA-GCGAAGTTGTTG 2441
||||||| |||||||||||||||||||||| |||||||||||||||| | ||||||||||
Sbjct 2379 CCCACCACAAGAAGGTGATTTACATGATCACAAACAAGCCAATGCAAAG-GAAGTTGTTG 2437
Query 2442 TCAGTCTTTCATGATTTGTACTCCACCC-AAAGTTCAATGTTGAACTTCCATAGTGTCGG 2500
||||||| |||||| ||||||||||||| |||||| |||||||||||||||| || ||||
Sbjct 2438 TCAGTCTCTCATGAATTGTACTCCACCCCAAAGTTGAATGTTGAACTTCCATTGTATCGG 2497
Query 2501 AGTTCTTATCTTGTTTATCAAACACTTTATTTTTTGGTCTCATGAAAAGAAACACATTTA 2560
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2498 AGTTCCTATCTTGTTTATCAAACACTTTATTTTT-GGTCTCATGAAAAGAAACACATTTA 2556
Query 2561 TTATAGAAGATTTGTATC 2578
||||||||||||||||||
Sbjct 2557 TTATAGAAGATTTGTATC 2574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127975871593
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5