BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471968
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17590.1 | Symbols: NF-YA8 | nuclear factor Y, subunit A8 | ... 1679 0.0
AT1G72830.2 | Symbols: HAP2C, ATHAP2C, NF-YA3 | nuclear factor ... 558 5e-158
> AT1G17590.1 | Symbols: NF-YA8 | nuclear factor Y, subunit A8
| chr1:6050222-6052541 REVERSE LENGTH=1452
Length=1452
Score = 1679 bits (909), Expect = 0.0
Identities = 1171/1292 (91%), Gaps = 40/1292 (3%)
Strand=Plus/Plus
Query 404 AGAGAGAGCTAATTGTTTGCCTCTGAGTCACATGGAAAAGAAAG-----GTT-CT-G--C 454
||||||||||||||| |||||||||||||||||||| ||||||| || || | |
Sbjct 177 AGAGAGAGCTAATTG-TTGCCTCTGAGTCACATGGATAAGAAAGTTTCATTTACTAGCTC 235
Query 455 ---GGCACATGCAACTCCATCATTCGTTAACACTTCCATCTCATGGGGACTTTCAACCGA 511
||||||| |||||||| ||| | ||| ||||||||||||||||||||| ||||| |
Sbjct 236 TGTGGCACATTCAACTCCACCATACCTTAGTACTTCCATCTCATGGGGACTTCCAACCAA 295
Query 512 ATCGAATGTCGGCGGT-TCTG-CT-A-TGCGTTTGAA---GGTAGATGCAAGACCAGAAC 564
||| || | || || ||| | | || ||||||| ||||||||||||||||||||
Sbjct 296 ATCCAA--T-GG-TGTGACTGAATCACTGAGTTTGAAGGTGGTAGATGCAAGACCAGAAC 351
Query 565 GTCTTTTAAACACAAATAATTTCAGTTTCCAGGACCAGGATTCATCTTCAACTCTGTCCA 624
||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 352 GTCTTATAAACACAAAGAATATCAGTTTCCAGGACCAGGATTCATCTTCAACTCTGTCCT 411
Query 625 CTGCTCAATCTTCTACCCATGTTGCTACTAGTGGAGATGATGACCCCTCCAGACATATCT 684
||||||||||||||| | ||||| | | ||||||||||||| ||||||| ||||| ||||
Sbjct 412 CTGCTCAATCTTCTAACGATGTTACAAGTAGTGGAGATGATAACCCCTCAAGACAAATCT 471
Query 685 CATTTTCAGCACATTCTGATATTTGTAAAGGATTTGAAGAAACTCAAAGGAAGCAATTTG 744
|||||| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 472 CATTTTTAGCACATTCAGATGTTTGTAAAGGATTTGAAGAAACTCAAAGGAAGCGATTTG 531
Query 745 CAAATCATATTAAATCAGGCTCCTCCACGGCAGGAATCGCTGATATTCACTTTTCTCCTT 804
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 532 -----CA-ATTAAATCAGGCTCCTCCACGGCAGGAATCGCTGATATTCACTCTTCTCCTT 585
Query 805 CCAAGGCTAACTTCTCATTTCACTATGCCGATCCACATTTTGGTGGTGTAATGCCTGCGG 864
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 586 CCAAGGCTAACTTCTCATTTCACTATGCCGATCCACATTTTGGTGGTTTAATGCCTGCGG 645
Query 865 CTTACCTACAACAGGCAACAATATGGAATCCCCAAATGGTGAGTCGAGTTCCGCTACCAT 924
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 646 CTTACCTACCACAGGCAACAATATGGAATCCCCAAA---TGACTCGAGTTCCGCTACCAT 702
Query 925 TCGACCTCATAGAAAATGAGCCTGTCTTTGTCAATGCAAAGCAATTCCATGCAATTATGA 984
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TCGATCTCATAGAGAATGAGCCTGTCTTTGTCAATGCAAAGCAATTCCATGCAATTATGA 762
Query 985 GGAGGAGGCAACAACGTGCAAAGCTAGAGGCGCAAAACAAATTAATCAGAGCCCGTAAGC 1044
||||||||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct 763 GGAGGAGGCAACAGCGTGCTAAGCTAGAGGCGCAAAACAAACTAATCAAAGCCCGTAAGC 822
Query 1045 CGTATCTTCATGAATCTCGACATGTTCACGCTCTTAAACGACCTAGAGGATCTGGTGGAA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CGTATCTTCATGAATCTCGACATGTTCACGCTCTTAAACGACCTAGAGGATCTGGTGGAA 882
Query 1105 GATTCCTAAACACCAGAAAGCTTCAAGAATCTACAGACCCAAAACAAGACATGCCAATCC 1164
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 883 GATTCCTAAACACCAAAAAGCTTCAAGAATCTACAGATCCAAAACAAGACATGCCAATCC 942
Query 1165 AACAGCAACACGCAAAGGGAAACATGTCACGATTCGTGGCTC-ACCAGCTGCAGACCAGC 1223
||||||||||||||| ||||||||||||| |||| ||| || | ||| |||||| ||||
Sbjct 943 AACAGCAACACGCAACGGGAAACATGTCAAGATTTGTG-CTTTATCAGTTGCAGAACAGC 1001
Query 1224 AAGGACCGTGGTTGTTCAACCACTTCTGGCTCTGACATCACCTCTGCTTCTGACGGCGTT 1283
|| ||| ||| |||||||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 1002 AATGACTGTGATTGTTCAACCACTTCTCGCTCTGACATCACATCTGCTTCTGACAGCGTT 1061
Query 1284 GATCTCTTTGGACACTCTGAATTTCAGATATCAGATCACCCATCTCAGACAAACCCAACA 1343
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1062 AATCTCTTTGGACACTCTGAATTTCTGATATCAGATTGCCCATCTCAGACAAACCCAACA 1121
Query 1344 ATGTATGTTCATGGTCAATCAAATGACATGCATGGAGGTGGGAACACTCATCATTTCTCT 1403
||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct 1122 ATGTATGTTCATGGTCAATCAAATGACATGCATGGAGGTAGGAACACACACCATTTCTCT 1181
Query 1404 GTCCATATCTGAGACAGTGGAATTTGGTGATGTGTATTTTCCCACaaaaaaaGGGAAGTC 1463
||||||||||||| | ||||||| |||| ||||||| |||| |||||||||||||||||
Sbjct 1182 GTCCATATCTGAGCCGGTGGAATCTGGTAATGTGTACGTTCCTACAAAAAAAGGGAAGTC 1241
Query 1464 ATCCTTGGCTGCTACCTCGCT-ACTTCGCTAGTTCTTATTTCAAACGCTTTGTCCAGATA 1522
||||||||||||||| ||||| | || |||||||||||||||| ||||||||||||||||
Sbjct 1242 ATCCTTGGCTGCTACTTCGCTTA-TTAGCTAGTTCTTATTTCACACGCTTTGTCCAGATA 1300
Query 1523 TCATTTGAATGACCAAAA-CCTTCAAGCTTCAACTCTTTAGTTCTCGTCTGTCGTTTGTA 1581
|||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 1301 TCATTTGAATGACCAAAAACCTTCAAGCTTCAACTCTTTACTTTTCGTCTGTCGTTTGTA 1360
Query 1582 CCATGGATCATCGTGTGTTAAGTCAGTGATTGGATTGGAGTGTTAAATGTAAATGTAAAT 1641
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1361 CCATGGATCATCGTGTGTTAAGTCAGTGATTGGATTGGAGTGATGAATGTAAATGTAAAT 1420
Query 1642 GTAAATA-CTGTTAAGTCTCTGCTCTTTGCTT 1672
| | || | | ||||||||||||||||||||
Sbjct 1421 CTGA-TAACCGATAAGTCTCTGCTCTTTGCTT 1451
> AT1G72830.2 | Symbols: HAP2C, ATHAP2C, NF-YA3 | nuclear factor
Y, subunit A3 | chr1:27405461-27407969 REVERSE LENGTH=1689
Length=1689
Score = 558 bits (302), Expect = 5e-158
Identities = 775/990 (78%), Gaps = 85/990 (9%)
Strand=Plus/Plus
Query 540 TTGAAGGTAGATGCAAGACCAGAACGTCTTTTAAAC-ACAAA-TAATTTCAGTTTCCAGG 597
|||||||| ||| ||||||| | | | | |||| ||||| || ||||||| ||||
Sbjct 561 TTGAAGGTTGATTCAAGACCTGGGCAT-ATACAAACTACAAAGCAA-ATCAGTTTTCAGG 618
Query 598 ACCAGGATTCATCTTCAACTCTGTCCACTGCTCAATCTTCTACCCATGTTGCTACTAGTG 657
|||| |||||||||||||| | |||||||| |||||||| ||| | ||||||| |||||
Sbjct 619 ACCAAGATTCATCTTCAACACAGTCCACTGGTCAATCTTATACTGAAGTTGCTAGTAGTG 678
Query 658 GAGATGATGACCCCTCCAGACATATCTCATTTTCAGCACATTCTGATATTTGTAAAGGAT 717
| |||||| | || |||||||| ||||| ||||| | || | | | |||||
Sbjct 679 GTGATGATAATCCTTCCAGACAAATCTCCTTTTC-G-----GCT-A-A---AT-CAGGAT 726
Query 718 TTGAAGA-AACTCAAAGGAAGCAATTTGCAAATCATATTAAATC-AGGCTCCTCCACGGC 775
|||| | ||||||| ||||| ||||||| | || |||| | ||| ||| | | |
Sbjct 727 CTGAA-ATAACTCAACGGAAGGGGTTTGCAAGTAATCCTAAA-CAAGG---CTCGATGAC 781
Query 776 AGGAATCGCTG-ATATTCACTTTTCTCCTTCCA-AGGCTAACTTCTCATTTCACTATGCC 833
|| || | | ||||||||||| |||| | || ||||||| |||||||||||||||||
Sbjct 782 TGG-ATTTCCGAATATTCACTTTGCTCC-TGCACAGGCTAATTTCTCATTTCACTATGCT 839
Query 834 GATCCACATTTTGGTGGTGTAAT-GCCTGCGGCTTACCTACAACAGGCAACAATATGGAA 892
|||||||||| ||||||| || | | |||| ||||||||| ||||||| ||| ||| ||
Sbjct 840 GATCCACATTATGGTGGTTTATTAG-CTGCAACTTACCTACCACAGGCACCAACATGCAA 898
Query 893 TCCCCAAATGGTGAGT-CGAGTTCC--G-C---TACCATT-----C-GACCTCATAGAAA 939
||| |||||||||||| || |||| | | | || || | || |||| |||||
Sbjct 899 TCCTCAAATGGTGAGTATGA-TTCCTGGTCGTGTTCCTTTACCAGCAGAGCTCACAGAAA 957
Query 940 ATGAGCCTGTCTTTGTCAATGCAAAGCAATTCCATGCAATTATGAGGAGGAGGCAACAAC 999
||| || |||||||||||||| ||||||| ||| ||||||||||||||||| || ||||
Sbjct 958 CTGATCCAGTCTTTGTCAATGCGAAGCAATACCACGCAATTATGAGGAGGAGACAGCAAC 1017
Query 1000 GTGCAAAGCTAGAGGCGCAAAACAAATTAATCAGAGCCCGTAA-G--CCGTATCTTCATG 1056
|||| ||||| ||||| ||||||||| |||||||||||||||| | || ||||||||||
Sbjct 1018 GTGCTAAGCTTGAGGCTCAAAACAAACTAATCAGAGCCCGTAAGGTACCCTATCTTCATG 1077
Query 1057 AATCTCGACATGTTCACGCTCTTAAACGACCTAGAGGATCTGGTGGAAGATTCCTAAACA 1116
| |||||||||||||| ||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1078 AGTCTCGACATGTTCATGCTCTTAAAAGGCCAAGAGGATCTGGTGGAAGATTCCTAAACA 1137
Query 1117 CC-AGAAA--GCTTCAAGAAT-C-TACAGAC--C--C-A-A-AACAAG-ACATGCCAA-- 1161
|| | ||| |||||||||| | |||| | | | | | |||||| ||| | |||
Sbjct 1138 CCAAAAAACTTCTTCAAGAATCCGAACAGGCTGCTGCTAGAGAACAAGAACAGGACAAGT 1197
Query 1162 T---CCAACA-G-CAACACGCAAAGGGAAACATGTC-ACGATTCGTGGCTCACCA-GCTG 1214
| |||||| | |||| | |||| |||||||| | |||||| ||||| | ||||
Sbjct 1198 TAGGCCAACAGGTAAACA-G-AAAGACCAACATGTCTA-GATTCGAAGCTCA-TATGCTG 1253
Query 1215 CAGACCAGCAAGGACCGTGGTTGTTCAACCACTTCTGGCTCTGACATCACCTCTGCTTCT 1274
|||| || ||| |||| | | ||||||||||||||||| ||||||||||||| |||
Sbjct 1254 CAGAACAACAAAGACC---GCAGCTCAACCACTTCTGGCTCAGACATCACCTCTGTTTCC 1310
Query 1275 GACGGCGTTGATCTCTTTGGACACTCTGAATTTCAGATATCAGATCACCCATCTCAGACA 1334
||||| | |||| ||||||||||| ||||||| ||| | |||| | |||| ||| || |
Sbjct 1311 GACGGTGCTGATATCTTTGGACACACTGAATTCCAGTTTTCAGGTTTCCCAACTCCGATA 1370
Query 1335 AACCCAACAATG-TATGTTCATGGTCAATCAAATGACATGCATGGAGGTGGGA-ACACT- 1391
|||| | | ||| | |||||||||||| || |||||||||||||||||| ||| ||| |
Sbjct 1371 AACCGAGCCATGCT-TGTTCATGGTCAGTCTAATGACATGCATGGAGGT-GGAGACA-TG 1427
Query 1392 CATCATTTCTCTGTCCATATCTGAGACAGTGGAAT-TTGGTGATGTGT--ATTTTCCCAC 1448
|| |||||||||||||||||||||||||||||| | |||||| ||||| || |||||||
Sbjct 1428 CACCATTTCTCTGTCCATATCTGAGACAGTGGA-TCTTGGTGCTGTGTTCATGTTCCCAC 1486
Query 1449 aaaaaaaGGGAAGTCATCCTTGGCTGCTAC 1478
|| || |||||||||||||||||| ||||
Sbjct 1487 CAAGAAGGGGAAGTCATCCTTGGCTACTAC 1516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82630097070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5