BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471970
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17610.1 | Symbols: | Disease resistance protein (TIR-NBS c... 979 0.0
AT5G40090.1 | Symbols: | Disease resistance protein (TIR-NBS c... 361 1e-98
> AT1G17610.1 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr1:6056895-6058357 FORWARD LENGTH=1463
Length=1463
Score = 979 bits (530), Expect = 0.0
Identities = 597/630 (95%), Gaps = 2/630 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTCCTCTTATTCTTTTTTGTTGGCCGGAAGAGAGTTGGATGTGTTCTTGAGTTTC 60
|||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTACTTCTTATTCTTTTTTGTTGGCTGGAAGAGAGTTGGATGTGTTCTTGAGTTTC 60
Query 61 AGCGGTAAGATAGCTCTTGACGTTAATTTCGGCTATGATTTGTCTCGGAATGGCATCAAA 120
|||||||||||||||||||||||| |||| || ||||||||||| || ||||| ||||||
Sbjct 61 AGCGGTAAGATAGCTCTTGACGTTGATTTTGGTTATGATTTGTCACGAAATGGTATCAAA 120
Query 121 GCTTTTAAATCCGAAAGCTGGAAGGAGAGTAGCTTCAAACCAATTGATCAACGAACACTT 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 121 GCTTTTAAATCCGAAAGCTGGAAGGAGAGTAGCTTCAAACCAATTGATCTACGAACGCTT 180
Query 181 GAGGCTTTGACAGAGTCCAAAGTTGCAGTTGTCATGACGTCTGATGAAGAAGCTTCTTCA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 GAGGCTTTGACAGAGTCCAAAGTTGCAGTTGTCATGACGTCTGATGAAGAAGTTTCTTCA 240
Query 241 GTTGGGTTCCTTGAAGAGCTCATTGTAATAGTTGAGTTTCAAGAGAAACGTTCACTCACT 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 GTTGGGTTCCTTGAAGAGCTCATTGTAATAATTGAGTTTCAAGAGAAACGTTCACTCACT 300
Query 301 GTCATACCAATCTTCCTCACAAAACACCCTTTGGATGTGGAACAAGTCTCTCAGATATTT 360
||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 301 GTCATACCAGTCTTCCTCACAAAACACCCTTTGGATGTGGAAAAAGTCTCTCAAATATTT 360
Query 361 CCGGAGAGGGCCATAATTTGGAAGACTGCAATTGCCAAACTGGAGAGCATAGCTTCACAG 420
|| ||||| |||| |||||||| ||||||||||||||||||||| | ||||||| |||||
Sbjct 361 CCTGAGAGAGCCAAAATTTGGAGGACTGCAATTGCCAAACTGGACAACATAGCTGCACAG 420
Query 421 TACTCGTTTTCTCGGAATCTTGCGGTGATGCACGGAACACACCGGATCAAGCAAATTGCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 TACTCGTTTTCTCGGAATCTTGCGGTGATGCACGGAACACACCGGATCAAGCAGATTGCT 480
Query 481 GATGACATTAGGCTTATGTTTCTGTCCTCTGCATCAAGCGATTTCAAAGGACTTGCAGGA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 GATGACATTAGGCTTATGTTTCTGTCCTCTGCATCAAGCGATTTCAAAGGCCTTGCAGGA 540
Query 541 ATGGATCGTCACATGAAAGCATTTTATGCGTTGTTGGCTTTGGAATCTGAC-AAAGAGGT 599
||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||
Sbjct 541 ATGGACCGTCACATGAAAGCATTGTATGCGTTGTTGGCTTTAGAATCTGACGAAA-AGGT 599
Query 600 TCGTACCGTTGGCATTTGGGGTAGTGCAGG 629
||||||| |||| |||||||||||| ||||
Sbjct 600 TCGTACCATTGGTATTTGGGGTAGTTCAGG 629
Score = 773 bits (418), Expect = 0.0
Identities = 480/511 (94%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 627 AGGGGAACATCTTACAAGTTTGGATCATGAGATGAATGAAATGGCCGAAGCAAAGAAAAA 686
||||||| |||||| |||| || |||||||||||||||||||||| ||||||||| ||||
Sbjct 753 AGGGGAAGATCTTAGAAGTGTGAATCATGAGATGAATGAAATGGCGGAAGCAAAGCAAAA 812
Query 687 ACACCGGAAAGTTCTTTTGATAGCTGATGGTGTGAATAACATTGAACAAGGGAAGTGGAT 746
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 813 ACACCGGAAAGTTCTTTTGATAGCTGATGGTGTGAACAACATTGAACAAGGAAAGTGGAT 872
Query 747 CGCTGAGTACGCCAAGTGGTTTGCTCCAGGAAGCAGAGTCATTCTAATCGCTCAAGAAAA 806
||| ||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 873 CGCGGAGAACGCCAACTGGTTTGCTCCAGGAAGTAGAGTCATTCTAATCACTCAAGAAAA 932
Query 807 AAGTTTGCTTGTGGAATCTGGAGTGAATCATGTGTATGAAGTTGGTTCTCTAAGATACGA 866
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 933 AAGTTTGCTTGTGCAATCAGGAGTGAATCATGTGTATGAAGTTGGTTCTCTAAGATATGA 992
Query 867 TGAAGCTCTCCAACTCTTCTCACGTTTTGCTTTCACGCAGTCATATCCTCCTCCTGATTT 926
||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||
Sbjct 993 TGAAGCTCTCCAACTCTTCTCACGTTTTGCTTTCAAGCAGCCATATCCTTCTCCTGATTT 1052
Query 927 CGAACGCCTCTCGGTTCGTGCTGTCCAGCTTGCAGGGTTTCTTCCTGTGGCCATTAGACT 986
||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1053 TGAACGCCTCTCAGTTCGTGCTGTTCAGCTTGCAGGGTTTCTTCCTGTGACCATTAGACT 1112
Query 987 GTTTGGTTCGTTTTTAAATGGTAGAGATAAAGAGGAATGGGAAGCTACACTGCTTAAACT 1046
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1113 GTTTGGTTCGTTTTTAACTGGTAGAGATAAAGAGGAGTGGGAAGCTACACTGCTTAAACT 1172
Query 1047 CAATGCAAAGCAAGGTAAAGACATAACGGAAGTGTGGAAGATTATGGAGGCATTAGAAGA 1106
|||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||
Sbjct 1173 CAATGCAAAGCAAGGTAAAGACATAAAGGAAGTTTGGAAGATTATGGAAGCATTAGAAGA 1232
Query 1107 TAAAGATATCGTGGAAGCATCAGAAACATAA 1137
||||||||||||||||||||| ||| ||||
Sbjct 1233 TAAAGATATCGTGGAAGCATCCCAAAGATAA 1263
> AT5G40090.1 | Symbols: | Disease resistance protein (TIR-NBS
class) | chr5:16041919-16043494 REVERSE LENGTH=1576
Length=1576
Score = 361 bits (195), Expect = 1e-98
Identities = 373/458 (81%), Gaps = 16/458 (3%)
Strand=Plus/Plus
Query 662 ATGAAATGGCCGAAGCAAAGAAAAAACACCGGAAAGTTCT-TTTGATAGCTGATGGTGTG 720
||||||| ||||||||| | |||||||||||| |||| || || ||||||| ||||
Sbjct 800 ATGAAATTACCGAAGCAAGGCGTAAACACCGGAAAATTCTCCTT-ATCGCTGATGATGTG 858
Query 721 AATAACATTGAACAAGGGAAGTGGATCGCTGAGTACGCCAAGTGGTTTGCTCCAGGAAGC 780
|| ||||| |||||||||||||||||| ||| || || || ||||||||||||||||||
Sbjct 859 AACAACATGGAACAAGGGAAGTGGATCATTGAATATGCTAACTGGTTTGCTCCAGGAAGC 918
Query 781 AGAGTCATTCTAATC-GCTCAAGAA-AA-AAGTTTGCTTGTGGAATCTGGAGTGAATC-A 836
||||||||||| || || || ||| || || ||||||||| || | ||||||| | |
Sbjct 919 AGAGTCATTCTTATTAGC-CA-GAACAAGAA-TTTGCTTGTTGACGCCGGAGTGA-TGGA 974
Query 837 TGTGTATGAAGTTGGTTCTCTAAGATACGATGAAGCTCTCCAACTCTTCTCACGTTTTGC 896
|||||| ||||| | ||| ||||||| ||||||||||| ||| ||||||| | ||||||
Sbjct 975 TGTGTACGAAGTCAGATCTTTAAGATATGATGAAGCTCTTCAAGTCTTCTCTCATTTTGC 1034
Query 897 TTTCACGCAGTCATATCCTCCTCCTGATTTCGAAC-GCCTCTCGGTTCGTGCTGTCCAGC 955
||||| |||| | ||||| ||| ||||||||||| || || | |||||||||||||| |
Sbjct 1035 TTTCAAGCAGCCTTATCCACCTTCTGATTTCGAAGAGC-TCGCAGTTCGTGCTGTCCATC 1093
Query 956 TTGCAGGGTTTCTTCCTGTGG-CCATTAGACTGTTTGGTTCGTTTTTAAATGGTAGAGAT 1014
| ||||| ||||||||| ||| || |||||||||| || ||||||||| ||||| || |
Sbjct 1094 TCGCAGGCTTTCTTCCTTTGGGCC-TTAGACTGTTAGGGTCGTTTTTAGCTGGTAAAGGT 1152
Query 1015 AAAGAGGAATGGGAAGCTACACTGCTTAAACTCAATGCAAAGCAAGGTAAAGACATAACG 1074
|||||| |||| |||| ||||||| |||||||| |||||||||||| | | |||| |
Sbjct 1153 CGAGAGGAGTGGGTAGCTGCACTGCTCAAACTCAAGGCAAAGCAAGGTGGACATATAATG 1212
Query 1075 GAAGTGTGGAAGA-TTATGGAGGCATTAGAAGATAAAG 1111
||||||||||| | ||||||| ||| ||| |||||||
Sbjct 1213 GAAGTGTGGAA-ACTTATGGAAGCAACAGACGATAAAG 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55772805495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5