BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471972
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17620.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1531 0.0
> AT1G17620.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:6062216-6063291
FORWARD LENGTH=1076
Length=1076
Score = 1531 bits (829), Expect = 0.0
Identities = 986/1060 (93%), Gaps = 17/1060 (2%)
Strand=Plus/Plus
Query 1 TATAAAGAAGACACACatctcctaaatcttaccc---ttattatt-attctctctaatca 56
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 4 TATAAAGAAGACACACATCTCCTAAATCTTACCCTTATTATTATTCATTCTCTCTAATCA 63
Query 57 agtcttcttcttctctctc-aatctcaatctcCGATTATGACGGACGACAGAGTTTACCC 115
| || | ||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 64 AATC--C-TCTTCTCTCTCAAATCTCAATCTCCGATTATGACAGACGACAGAGTTTACCC 120
Query 116 TGCTTCAAAACCTCCCGCCATCGTCGGCGGCGGAGGTGGCGCAACCACAAATCCAACTTT 175
||| ||||||||||||||||||||||| ||| |||| | ||||||| |||||||||||
Sbjct 121 TGCATCAAAACCTCCCGCCATCGTCGGTGGC---GGTGCCCCAACCACCAATCCAACTTT 177
Query 176 TCCAGCGAACAAAGCTCAGCTCTACAACGCAAATCGTCCCGCTTACCGTCCACCAGCTGG 235
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CCCGGCGAACAAAGCTCAGCTCTACAACGCAAATCGTCCCGCTTACCGTCCACCAGCTGG 237
Query 236 TCGTCGCCGTAGTAGCCATAGCCGTGGATGTTGCTGCCGTTGCTGTTGCTGGACGATTTT 295
|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 238 TCGTCGTCGTACTAGCCATACCCGTGGATGTTGCTGCCGTTGCTGTTGCTGGACGATATT 297
Query 296 CGTAATCATCCTCTTAATCCTCATCGCCGCCGCCGCATCAGCCGTCGTTTACCTAATCTA 355
|||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 298 CGTAATCATCCTCTTACTCCTCATCGTCGCCGCCGCATCAGCCGTCGTATACCTAATCTA 357
Query 356 CCGTCCTCAACGGCCGAGCTTCACCGTCTCTGAACTCAAAATCTCCACTCTCAATTTCAC 415
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 358 CCGTCCTCAACGACCTAGCTTCACCGTCTCTGAACTCAAAATCTCCACTCTCAACTTCAC 417
Query 416 ATCCGCCACTCACCTCACTACCGCCATTTCCCTCTCCGTCATCGCCAGAAACCCTAACAA 475
||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCCGCCGTTCGCCTCACCACCGCCATTTCCCTCTCCGTCATCGCCAGAAACCCTAACAA 477
Query 476 AAACGTCGGGTTCAGCTACGACGCCACCGACATCACACTCTACAAAGTATCCACCGGAGG 535
|||||| || |||| |||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 478 AAACGTTGGATTCATCTACGACGTCACCGACATCACACTCTACAAAGCATCCACCGGAGG 537
Query 536 AGATGATGATGTAGTCATCGGTAAAGGAACGATCTCGTCGTTTGT-TCACGGGAAGAAGA 594
||||||||| |||||||| ||||||||||||||| || ||||| | ||||||||||||||
Sbjct 538 AGATGATGACGTAGTCATTGGTAAAGGAACGATCGCGGCGTTT-TCTCACGGGAAGAAGA 596
Query 595 ACACCACTACGCTTAGATCTACGATCGGAAGTCCTCCCGAAGATCCCGATGAGATATCGG 654
|||| |||||||||||| |||||||||||||||||| || || | ||||||||| ||||
Sbjct 597 ACACGACTACGCTTAGAAGTACGATCGGAAGTCCTCCGGATGAACTCGATGAGATCTCGG 656
Query 655 CGGGTAAGCTTAAAGGAGATCTGAAGGCGAAGAAAGCAGTAGCGATTAAGATTGTTTTGA 714
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 657 CGGGTAAGCTGAAAGGAGATCTGAAGGCGAAGAAAGCAGTGGCGATTAAGATTGTTTTGA 716
Query 715 ATTCCAAGGTGAAAGTGAAGATGGGATCTCTGAAAACTCCTAAGTCAGGAATTAGGGTTA 774
| || ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 717 ACTCGAAGGTGAAAGTGAAGATGGGAGCTCTAAAAACTCCTAAATCAGGAATTAGGGTTA 776
Query 775 CTTGTGAAGGGATTAAAGTGGTGGCTCCGACGGGAAAGAAGGCGACGACGGCTACTACCT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 777 CTTGTGAAGGGATTAAAGTGGTGGCTCCGACGGGAAAGAAGGCGACGACGGCTACGACTT 836
Query 835 CCGCCGCTAAGTGTAAGGTTGATCCAAGATTTAAGATTTGGAAAATTACTTTCTAAATAT 894
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 837 CCGCCGCTAAGTGTAAGGTTGATCCAAGATTTAAGATCTGGAAAATTACTTTCTAAATAT 896
Query 895 AGAAAACATA-TAATGGAATCACATTCTTAGttttttttttttttt-tttttattaatcc 952
|| ||||| | |||||||||||||||||||||||||| || |||| ||||||||| |||
Sbjct 897 AGTAAACAAAATAATGGAATCACATTCTTAGTTTTTTCTTCATTTTCTTTTTATTACTCC 956
Query 953 atttgtttcaattttcgtttctttttaaatttgatttcATATACAGTTCTTTGATTCCTG 1012
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATT-GTTTCAATTTTCATTTCTTTTTAAATTTGATTTCATATACAGTTCTTTGATTCCTG 1015
Query 1013 TAAGACTTTAtttttttGGTTTTATGTAAATGAAGATATA 1052
|||||||||||||||||||||| |||||||||||||||||
Sbjct 1016 TAAGACTTTATTTTTTTGGTTT-ATGTAAATGAAGATATA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51590468969
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5