BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471975
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17650.1 | Symbols: GLYR2, GR2 | glyoxylate reductase 2 | ch... 1842 0.0
> AT1G17650.1 | Symbols: GLYR2, GR2 | glyoxylate reductase 2 |
chr1:6069477-6072012 REVERSE LENGTH=1242
Length=1242
Score = 1842 bits (997), Expect = 0.0
Identities = 1096/1144 (96%), Gaps = 6/1144 (1%)
Strand=Plus/Plus
Query 1 TGAGAATTTCGGCCACAGTCTACTTAACAAACGCACTGGCCAATGGCCATGCCTTTTGGT 60
|||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||
Sbjct 1 TGAGAATTTCGGCCACAGTCTACTAAACAAACGCACTGGCCAGTGGCTATGCC-TTTGGT 59
Query 61 TTCATTATCTTTTGCTTCTTCTTCTTCAAGAGCCATGGCTTTGTGCTCTATCTTCTGCCC 120
|||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||
Sbjct 60 TTCATTATCTTTTGCTTCATCTTCTTCAAAAGCCATGGCTTTGTGCTCTA---TCTGTCC 116
Query 121 TCGTATCCCTCTTCGATTCAGGCCAAAACCCATTTCCCCTTTTCTCTCAAAACCTCAAAT 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TCGCATCCCTCTTCGATTCAGGCCAAAACCCATTTCCCCTTTTCTCTCAAAACCTCAAAT 176
Query 181 TTGTCTCTCTTATAGGGTTTACTCTTCCCTGCAATCTACTACTCCCTCTACCAAAGATGA 240
||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 TTGTCTCGCTTACAGGGTTTACTCTTCCCTGCAATCTACTACTCCCTCTACCAGAGATGA 236
Query 241 ACTTGGCACTGTTAGCATTGGGTTTCTTGGTATGGGAATCATGGGTTCTCCAATGGCACA 300
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 ACTTGGAACTGTTAGCATTGGGTTTCTGGGTATGGGAATCATGGGTTCTCCAATGGCACA 296
Query 301 AAACCTCATCAAAGCTGGGTGTGATGTGACTGTATGGAATCGAACTAAGAGCAAATGTGA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAACCTCATCAAAGCTGGGTGTGATGTGACTGTATGGAATCGAACTAAGAGCAAATGTGA 356
Query 361 TCCTCTCGTTGGATTAGGAGCAAAGTACAAGTCTTCTCCTGAAGAAGTGACTGCAACTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TCCTCTCGTTGGATTAGGAGCAAAGTACAAGTCTTCTCCTGAAGAAGTGACTGCAACTTG 416
Query 421 TGATCTCACATTTGCAATGCTTGCTGATCCTGAAAGTGCAATTGATGTTGCCTGTGGAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 TGATCTCACATTTGCAATGCTTGCTGATCCTGAAAGTGCAATTGATGTTGCATGTGGAAA 476
Query 481 TAATGGAGCCGTATTTGGAATTAGTTCAGGAAAAGGGTATGTTGATGTCTCAACCGTTGA 540
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GAATGGAGCCATATTTGGGATTAGTTCAGGAAAAGGGTATGTTGATGTCTCAACCGTTGA 536
Query 541 TGCTG-CCTCATCGATTCTAATCAGCAAGCAAATAAAGGATACCGGAGCATTGTTCTTGG 599
|| || ||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 537 TG-TGGCCTCATCAATACTAATCAGCAAGCAAATAAAGGATACCGGAGCCTTGTTCTTGG 595
Query 600 AGGCACCAGTTTCAGGTTCCAAAAAGCCTGCCGAAGATGGGCAGTTGATATTCCTCACAG 659
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 596 AGGCACCAGTTTCAGGTTCCAAAAAGCCTGCCGAAGATGGGCAGTTAATATTTCTCACTG 655
Query 660 CAGGTGACAAGCCGCTATACGAAAAAGCTGCTCCTTTCTTAGACATCATGGGAAAGTCAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CAGGTGACAAGCCGCTATACGAAAAAGCTGCTCCTTTCTTAGACATCATGGGAAAGTCAA 715
Query 720 GATTCTATTTGGGTGAAGTTGGTAATGGAGCAGCAATGAAACTTGTTGTCAATATGATCA 779
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 716 AATTCTATTTGGGTGAAGTTGGTAATGGAGCAGCAATGAAACTTGTCGTCAACATGATCA 775
Query 780 TGGGAAGCATGATGGCATCATTCGCTGAGGGAATACTTCTAAGCCAGAAAGTTGGACTCG 839
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 776 TGGGAAGTATGATGGCATCATTCGCGGAGGGAATACTTCTAAGCCAGAAAGTTGGACTCG 835
Query 840 ATCCAAATGTACTGGTCGAGGTTGTCTCACAGGGAGCTATCAATGCGCCAATGTACTCGC 899
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 836 ATCCAAATGTACTTGTCGAGGTTGTCTCACAGGGAGCTATCAATGCGCCAATGTACTCAC 895
Query 900 TAAAGGGTCCTTCAATGATCAAGTCAGTTTACCCGACGGCTTTTCCATTAAAACACCAGC 959
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 896 TAAAGGGTCCTTCAATGATCAAGTCAGTGTACCCGACGGCTTTTCCATTAAAGCATCAGC 955
Query 960 AGAAGGATATGAGACTCGCACTTGGACTAGCGGAATCCGTATCTCAATCTACTCCGATTG 1019
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 AGAAGGATATGAGACTCGCACTTGGACTAGCGGAATCCGTATCGCAATCTACTCCGATTG 1015
Query 1020 CAGCGGCTGCGAACGAGCTTTACAAGGTCGCAAAATCTTATGGGTTGAGTGATGAAGATT 1079
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1016 CAGCCGCTGCGAACGAGCTTTACAAGGTTGCAAAATCTTATGGGTTGAGCGATGAAGATT 1075
Query 1080 TCTCTGCAGTTATTGAAGCACTGAAAGCTGCGAAATCCTGAGAAGCTTAGCTGAAGATTT 1139
|||||||||| ||||||||||| |||||||| |||||| ||||||||||||| |||||||
Sbjct 1076 TCTCTGCAGTAATTGAAGCACTAAAAGCTGCAAAATCCCGAGAAGCTTAGCTAAAGATTT 1135
Query 1140 GTTC 1143
||||
Sbjct 1136 GTTC 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5