BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471977 Length=2863 Score E Sequences producing significant alignments: (Bits) Value AT1G17680.1 | Symbols: | tetratricopeptide repeat (TPR)-contai... 4394 0.0 > AT1G17680.1 | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr1:6076077-6082334 FORWARD LENGTH=3176 Length=3176 Score = 4394 bits (2379), Expect = 0.0 Identities = 2728/2890 (94%), Gaps = 50/2890 (2%) Strand=Plus/Plus Query 1 AAAGAGAGTTTTTGATTTGTTTATTCTTCTCTTGTTGAAACTTGAAAGGATGGAAGATAA 60 |||||||||||||||||||| |||||||||| | || |||||| |||||||||||| Sbjct 270 AAAGAGAGTTTTTGATTTGTGTATTCTTCTC-T-TT-----TTGAAAAGATGGAAGATAA 322 Query 61 GGGAAAGGGTGTGGTGGAAGGAGATGA-GGGAA----A---C----TTAGAAGAAGGTCC 108 ||||||||||||||||||||||||||| ||||| | | |||||||||||||| Sbjct 323 GGGAAAGGGTGTGGTGGAAGGAGATGAGGGGAACTTGATTTCTGAGTTAGAAGAAGGTCC 382 Query 109 AAGCAACATGGAATGTGACAAGGAAGTACTTGGTGGTGATGA-TAAAGACAG-TGATGAA 166 |||||| ||||||||||||||| ||||||||||||||||| | ||| | | |||| || Sbjct 383 AAGCAATATGGAATGTGACAAGCAAGTACTTGGTGGTGAT-ACTAATTA-TGATGATAAA 440 Query 167 GAAGGT---C--TG--GTAg-atg-atgat-gatgatgatgatgatgatagtgatgatga 216 | | | | || | || | | || | ||||||||||||||||||||||||||||| Sbjct 441 G-ACTTAAACAGTGATGAAGAAGGTCTGGTAGATGATGATGATGATGATAGTGATGATGA 499 Query 217 tgatgagggagatgagtcagaagaagaagaagatgaCTTTGAAGCTGGAAGTGAAATTCC 276 |||||||||||||||||| |||||||||||||||||||||||||||||||| | || Sbjct 500 TGATGAGGGAGATGAGTC---AGAAGAAGAAGATGACTTTGAAGCTGGAAGTG---TCCC 553 Query 277 AAACACGTTTGAACCACTTGAGTATGAAGCTCTGGCTGAGAGGAAACGCAAAGCACTGGC 336 |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || Sbjct 554 AAACACGTTTGAACGACCTGAGTATGAAGCTCTGGCTGAGAGGAAACGCAAAGCACTTGC 613 Query 337 TGATTCTCAACGTAATGCTATTAACATCTCGAATAGCACCTCAGGCGTGGAGGGATTCAT 396 |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 614 TGATTCTCAACGTAATCCTAGTAACATCTCGAATAGCACCTCGGGCGTGGAGGGATTCAT 673 Query 397 GGAATTTTTGTCTTCTGGTCGCCGACGGAAATCCAGGAAGTATaaaaaaaaGGGTAGAAG 456 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 674 GGAATTTATGTCTTCTGGTCGCCGACGGAAATCCAGGAAGTATAAGAAAAAGGGTAGAAG 733 Query 457 ACTTGGGTCAAAGAAAGAAGTTGCACCTGACATTCTAAAGAGGTTTAGGGAGGCTCTTTT 516 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 ACCTGGGTCAAAGAAAGAAGTTGCACCTGACATTCTAAAGAGGTTTAGGGAGGCTCTTTT 793 Query 517 TCTTCATGCACACGGCCGTGATATTGAGGCTTTACCTATTTTAGTAGAAGTTATTAAGCA 576 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 794 TCTTCATGCACATGGCCGTGACATTGAGGCTTTACCTATTTTAGTAGAAGTTATTAAGCA 853 Query 577 AGCACCAGCTTTCGATATAGCATACTATTATCTTTCACGTGTTTCTGAGCAACTTGGTAG 636 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 854 AGCACCAGCTTTCGATATAGCATACTATTACCTTTCACGTGTTTCTGAGCAACTTGGTAA 913 Query 637 GGCCGAATCATCTTCTACGGAAGCATTAAAGATTGCTGCAAATATCAAAGGTTCAAAATC 696 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 914 GACCGAATCATCCTCTACGGAAGCATTAAAGATTGCTGCAAATATCAAAGGTTCAAAATC 973 Query 697 ACCTTTTTGGAAATTGCTTTATGAGAGGTTCAAGGAACAAGAGGACATGGCGGTAGCAAG 756 |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 974 ACCTTTTTGGAAGTTGCTTTATGAGAGGTTCAAGGAACAAGAGAACATTTCGGTAGCAAG 1033 Query 757 GAGTTATGCTTCCAAAGCAATACAAGCTGATCCAGATGATATCCCTTTGAAATATGAATA 816 ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1034 GAGTTATGCGTCGAAAGCAATTCAAGCTGATCCAGATGATATCCCTTTGAAATATGAATA 1093 Query 817 TGCTGACCTCTGCCTAAATGCTGGAAAATATAGAGAAGCTGCTGAAACCTATGAGCAAAT 876 ||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1094 TGCAGACATCTGCCTAAATACTGGAAAATATAGAGAAGCTGCTGAAACCTTTGAGCAAAT 1153 Query 877 ATTTCGTCGGTGTCCTGAGAGAATTGAAGCACTCAAGTGGGGGATAGAGTATTTCCTTAA 936 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1154 ATTTCGTCGGTGTCCTGAGAGAATTGAAGCACTCAAGTGGGGGGTACAGTATTTCCTTAA 1213 Query 937 ATCCGGTGAGGGTGAACGAGCAGCGAGCATCTTAGAGGATCATATTAAATCCCATTCATC 996 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1214 ATCCGGTGAGGGTGAACGAGCAGCGAGCATCTTAGAGGATCATATCAAATCCCATTCATC 1273 Query 997 TGAAGTGGGGCACGATATCTTGGATTTACTGGCTTCAGTTTTCATGCAAATTAATGTGCA 1056 |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| ||| Sbjct 1274 TGAAGTGGGGCACGATGTCTTGGATTTACTGGCTTCTGTTTTCATGAAAATTAATGCGCA 1333 Query 1057 TGATAGAGCTCTTAAGTATATTCATGATGTGCGCCAGATTTACAATGTTGGAAAAGAACT 1116 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 1334 TGATAGAGCTCTTAAGTATATTCACGATGTGCGCCAGATTTACAATGTTGGAAAAGAATT 1393 Query 1117 GTCTTCCAGCTTGAAAATCAGACAAGCCATCTGTCATGTTCACCTTGAAGAAATGGAGCA 1176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1394 GTCTTCCAGCTTGAAAATCAGACAAGCCATCTGTCATGTTCACCTTGAAGAAATGGAGCA 1453 Query 1177 GGCAGAGAGTGTGTTAAGTATTCTACCACAGGAGGCTGTATCTGAACATCCAGAGCTCAT 1236 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1454 GGCAGAGAGCGTGTTAAGCATTCTACCACAGGAGGCTGTATCTGAACATCCAGAGCTCAT 1513 Query 1237 TACCAATTTGGCTGATGAGCTAACAAACATTGGGAATTTCCACTCTGCTCTCAAATACTA 1296 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1514 CACCAATTTGGCTGATGAGCTAACAAACATTGGGAATTTCCACTCTGCTCTCAAATACTA 1573 Query 1297 TTTAGAAGCAATCAGTGAACCTGTGAATAATGGCTATTTGTTTGTGAAAATTGCTCGCTG 1356 | ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| Sbjct 1574 TATAGAAGCAATCAGTGAACCTGTG---AATGGCAATTTGTTTGTAAAAATTGCTCGCTG 1630 Query 1357 TTATATGTCATTGGCAGAACGAGAACAGGCCATTGTTTTCTATTATAAAGCTCTGAATGA 1416 |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1631 TTATATGTCATTGGAAGAAAGAAAACAGGCCATTGTTTTCTATTATAAAGCTCTGAATGA 1690 Query 1417 ACTCAGTGATACGGTTGATATTCGCATAACTCTGGCTTCACTCCTCCTTGAAGATGGCAA 1476 ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1691 ACTCAGTGATACGGTTGATGTTCGCATAACTCTGGCTTCACTCCTCCTGGAAGATGGCAA 1750 Query 1477 ACGAGATGAAGCTGTATTAGTGCTTTCTCCTCCGGAAAATCCAGATCCTGATACTGCTAA 1536 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1751 ACGAGATGAAGCTGTATTAGTGCTTTCTCCTCCGGAAAATCCAGATCCTGATACGGCTAA 1810 Query 1537 ACTGAAGGCATGGTGGAAAAACAGAAAGATCAGGATGAATCTTTGTCAGATCTATCATTC 1596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1811 ACTGAAGGCATGGTGGAAAAACAGAAAGATCAGGATGAATCTTTGTCAGATCTATCATTC 1870 Query 1597 AGAGGGAATGCTTGAGGACTTCGCCAATACAGCACTGCAGTTGGTACTTAAGTGGGTTTG 1656 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1871 AGAGGGAATGCTGGAGGACTTCGCCAATACAGCACTGCAGTTGGTACTTAAGTGGGTTTG 1930 Query 1657 GCGGCGGACGGTCAAGGGGAAAAGAAAACGACTGGTTCTTTCAGAGCATCAAAGAAACAA 1716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1931 GCGGCGGACGGTCAAGGGGAAAAGAAAACGACTGGTTCTTTCAGAGCATCAAAGAAACAA 1990 Query 1717 AAAACGCCGACGTCCTAGAGATGCTCAAGCTTCCCAGTTGAGAGGCGGACCAAAAAAGTG 1776 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1991 AAAACGCCGACGTCCTAGAGATGCTCAAGCTTCCCAGTTGAGAGGGGGACCAAAAAAGTG 2050 Query 1777 GCGCAAAATCAGGGCAACATTAAATGAAACAAGAAGAATTAGAGAACGAGCTGCTATCAA 1836 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 2051 GCGCAAAATCAGGGCAACGTTAAATGAAACAAGAAGAATTAGAGAACGAGCTGCTATTAA 2110 Query 1837 AGCTCATAACGAAGATATCTGCAGTGAATCTGAGGAAGAAGTTATCAAGGATGAAGAGTA 1896 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2111 AGCTCATAACGAAGATGTCTGCAGTGAATCTGAGGAAGAAGTTATCAAGGATGAAGAGTA 2170 Query 1897 TCACCGTCTCTTTGTGGATTTGTGCAAGGCATTGGCATCCCTGCAGAGATATTGGGAAGC 1956 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2171 TCACCGTCTCTTTGTGGATTTGTGCAAGGCATTGGCATCCCTACAGAGATATTGGGAAGC 2230 Query 1957 TCTGGAGATAGTTAATTTGGCTCGGAGATTGGATGCTAAAATGCTGCCTGTTGAGACAAA 2016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2231 TCTGGAGATAGTTAATTTGGCTCGGAGATTGGATGCTAAAATGCTGCCTGTTGAGACAAA 2290 Query 2017 AAAGGAGCTTCAGTCACTTGGAGCTAAAATATCGTGCGATACTATGGATCCAAAGCAGTG 2076 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2291 AAAGGAGCTTCAGTCACTTGGAGCTAAAATATCTTGCGATACTATGGATCCAAAGCAGTG 2350 Query 2077 GTTTGACTGTGTAAGATCTGTCATTCAGCAACATCCATATCGTTTGAATGCCTGGAACTG 2136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351 GTTTGACTGTGTAAGATCTGTCATTCAGCAACATCCATATCGTTTGAATGCCTGGAACTG 2410 Query 2137 CTATTACAGAGTCATTTCAAGACTAGGGAAAAGAGCATCGACTGAAGCTAAGTTCATGCA 2196 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2411 CTATTACAGTGTCATTTCGAGACTAGGGAAAAGAGCATCGACTGAAGCTAAGTTCATGCA 2470 Query 2197 TCACTTAAGGAGCAAGTACCGAGATTGCGTACCGCCCATTCTAATTGCTGGTCATCACTT 2256 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 2471 TCACTTAAGGAGCAAGTACCGAGATTGCGTACCCCCCATTCTTATTGCTGGTCATCACTT 2530 Query 2257 TACCGTGACAAGCCGACATCAAGATGCTGCAAGAGAATACCTTGAAGCATATAAATTAAT 2316 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2531 CACCGTGACAAGCCGACATCAAGATGCTGCAAGAGAATACCTTGAAGCATATAAATTAAT 2590 Query 2317 GCCTGATAGTCCTTTAATTAACCTGTGTGTGGGAGCTGCTTTAATCAACTTAGCCCTCGG 2376 |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2591 GCCTGAGAGTCCTTTAATTAACCTGTGTGTGGGAGCTGCGTTAATCAACTTAGCCCTCGG 2650 Query 2377 TTTTCGACTCAAAAACCGACATGAGTGTCTTGCTCAAGGCTTTGCATTTCTGTACAACAA 2436 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 2651 TTTTCGACTCAAAAACAGACACGAGTGTCTTGCTCAAGGCTTTGCATTTCTGTACAACAA 2710 Query 2437 TCTCAGAATTTGCAGTGACAGTCAGGAGGCGTTGTATAACGTTGCTCGAGCGTATCAGCA 2496 |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| Sbjct 2711 TCTCAGAATTTGCAGTAACAGTCAGGAGGCGTTATACAACGTTGCTCGAGCGTATCAGCA 2770 Query 2497 TGTGGGACTAGTGACTCTTGCAGCTTCATACTACGAGAAGGTTTTAGCGATTTACGAGAA 2556 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2771 TGTAGGACTAGTGACTCTTGCAGCTTCATACTACGAGAAGGTGTTAGCGATTTACGAGAA 2830 Query 2557 AGAATAC-CTGATGCCGAAACTCCCTAACGAGGATCCGAATGTTGCAGAAGAGCGGAAGC 2615 ||| ||| | |||||||||||| |||||||||||||||| |||||| ||||||||||||| Sbjct 2831 AGATTACAC-GATGCCGAAACTTCCTAACGAGGATCCGATTGTTGCGGAAGAGCGGAAGC 2889 Query 2616 CTGTGAATTGTGATCTCCGCAAAGAAGCTGCACACAATCTGCATTTGATCTATAAGCACA 2675 ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2890 CTGTGAACTGTGACCTACGCAAAGAAGCTGCACACAATCTGCATTTGATCTATAAGCACA 2949 Query 2676 GTGGAGCAGTT-GATCTCGCGAGGCAAGTCTTAAAGGATCACTGCAGTTTCTGAGTCTCC 2734 ||||||| ||| ||||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 2950 GTGGAGC-GTTTGATCTCGCGAGGCAAGTATTAAAGGATCACTGCACTTTCTGAGTCTCG 3008 Query 2735 TTATCATTGTCGttttttttttAAACGAAGATAAAACACTAGGAAACCAC-CCTATTTTA 2793 | ||||||||| || |||||| ||||||||||||||||||||| ||| || | |||| Sbjct 3009 TAATCATTGTCCTTGTTTTTTCAAACGAAGATAAAACACTAGGGAACTGTTCC-AGTTTA 3067 Query 2794 TATGTTCCAAACAAAGTTTGTTTTTCATGCATTTATTTAGTTTTCTCACAAAACTTGATC 2853 | | |||||||||||||||||||||||| | |||||||||||||||| ||||||| Sbjct 3068 TTTAAAGGGAACAAAGTTTGTTTTTCATGCATT-ACTTAGTTTTCTCACAAATCTTGATC 3126 Query 2854 TGGATATTGC 2863 || ||||||| Sbjct 3127 TGTATATTGC 3136 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 142273450348 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5