BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471977
Length=2863
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17680.1 | Symbols: | tetratricopeptide repeat (TPR)-contai... 4394 0.0
> AT1G17680.1 | Symbols: | tetratricopeptide repeat (TPR)-containing
protein | chr1:6076077-6082334 FORWARD LENGTH=3176
Length=3176
Score = 4394 bits (2379), Expect = 0.0
Identities = 2728/2890 (94%), Gaps = 50/2890 (2%)
Strand=Plus/Plus
Query 1 AAAGAGAGTTTTTGATTTGTTTATTCTTCTCTTGTTGAAACTTGAAAGGATGGAAGATAA 60
|||||||||||||||||||| |||||||||| | || |||||| ||||||||||||
Sbjct 270 AAAGAGAGTTTTTGATTTGTGTATTCTTCTC-T-TT-----TTGAAAAGATGGAAGATAA 322
Query 61 GGGAAAGGGTGTGGTGGAAGGAGATGA-GGGAA----A---C----TTAGAAGAAGGTCC 108
||||||||||||||||||||||||||| ||||| | | ||||||||||||||
Sbjct 323 GGGAAAGGGTGTGGTGGAAGGAGATGAGGGGAACTTGATTTCTGAGTTAGAAGAAGGTCC 382
Query 109 AAGCAACATGGAATGTGACAAGGAAGTACTTGGTGGTGATGA-TAAAGACAG-TGATGAA 166
|||||| ||||||||||||||| ||||||||||||||||| | ||| | | |||| ||
Sbjct 383 AAGCAATATGGAATGTGACAAGCAAGTACTTGGTGGTGAT-ACTAATTA-TGATGATAAA 440
Query 167 GAAGGT---C--TG--GTAg-atg-atgat-gatgatgatgatgatgatagtgatgatga 216
| | | | || | || | | || | |||||||||||||||||||||||||||||
Sbjct 441 G-ACTTAAACAGTGATGAAGAAGGTCTGGTAGATGATGATGATGATGATAGTGATGATGA 499
Query 217 tgatgagggagatgagtcagaagaagaagaagatgaCTTTGAAGCTGGAAGTGAAATTCC 276
|||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 500 TGATGAGGGAGATGAGTC---AGAAGAAGAAGATGACTTTGAAGCTGGAAGTG---TCCC 553
Query 277 AAACACGTTTGAACCACTTGAGTATGAAGCTCTGGCTGAGAGGAAACGCAAAGCACTGGC 336
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 554 AAACACGTTTGAACGACCTGAGTATGAAGCTCTGGCTGAGAGGAAACGCAAAGCACTTGC 613
Query 337 TGATTCTCAACGTAATGCTATTAACATCTCGAATAGCACCTCAGGCGTGGAGGGATTCAT 396
|||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 614 TGATTCTCAACGTAATCCTAGTAACATCTCGAATAGCACCTCGGGCGTGGAGGGATTCAT 673
Query 397 GGAATTTTTGTCTTCTGGTCGCCGACGGAAATCCAGGAAGTATaaaaaaaaGGGTAGAAG 456
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 674 GGAATTTATGTCTTCTGGTCGCCGACGGAAATCCAGGAAGTATAAGAAAAAGGGTAGAAG 733
Query 457 ACTTGGGTCAAAGAAAGAAGTTGCACCTGACATTCTAAAGAGGTTTAGGGAGGCTCTTTT 516
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 ACCTGGGTCAAAGAAAGAAGTTGCACCTGACATTCTAAAGAGGTTTAGGGAGGCTCTTTT 793
Query 517 TCTTCATGCACACGGCCGTGATATTGAGGCTTTACCTATTTTAGTAGAAGTTATTAAGCA 576
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 794 TCTTCATGCACATGGCCGTGACATTGAGGCTTTACCTATTTTAGTAGAAGTTATTAAGCA 853
Query 577 AGCACCAGCTTTCGATATAGCATACTATTATCTTTCACGTGTTTCTGAGCAACTTGGTAG 636
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 854 AGCACCAGCTTTCGATATAGCATACTATTACCTTTCACGTGTTTCTGAGCAACTTGGTAA 913
Query 637 GGCCGAATCATCTTCTACGGAAGCATTAAAGATTGCTGCAAATATCAAAGGTTCAAAATC 696
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 GACCGAATCATCCTCTACGGAAGCATTAAAGATTGCTGCAAATATCAAAGGTTCAAAATC 973
Query 697 ACCTTTTTGGAAATTGCTTTATGAGAGGTTCAAGGAACAAGAGGACATGGCGGTAGCAAG 756
|||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 974 ACCTTTTTGGAAGTTGCTTTATGAGAGGTTCAAGGAACAAGAGAACATTTCGGTAGCAAG 1033
Query 757 GAGTTATGCTTCCAAAGCAATACAAGCTGATCCAGATGATATCCCTTTGAAATATGAATA 816
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GAGTTATGCGTCGAAAGCAATTCAAGCTGATCCAGATGATATCCCTTTGAAATATGAATA 1093
Query 817 TGCTGACCTCTGCCTAAATGCTGGAAAATATAGAGAAGCTGCTGAAACCTATGAGCAAAT 876
||| ||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1094 TGCAGACATCTGCCTAAATACTGGAAAATATAGAGAAGCTGCTGAAACCTTTGAGCAAAT 1153
Query 877 ATTTCGTCGGTGTCCTGAGAGAATTGAAGCACTCAAGTGGGGGATAGAGTATTTCCTTAA 936
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1154 ATTTCGTCGGTGTCCTGAGAGAATTGAAGCACTCAAGTGGGGGGTACAGTATTTCCTTAA 1213
Query 937 ATCCGGTGAGGGTGAACGAGCAGCGAGCATCTTAGAGGATCATATTAAATCCCATTCATC 996
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1214 ATCCGGTGAGGGTGAACGAGCAGCGAGCATCTTAGAGGATCATATCAAATCCCATTCATC 1273
Query 997 TGAAGTGGGGCACGATATCTTGGATTTACTGGCTTCAGTTTTCATGCAAATTAATGTGCA 1056
|||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||| |||
Sbjct 1274 TGAAGTGGGGCACGATGTCTTGGATTTACTGGCTTCTGTTTTCATGAAAATTAATGCGCA 1333
Query 1057 TGATAGAGCTCTTAAGTATATTCATGATGTGCGCCAGATTTACAATGTTGGAAAAGAACT 1116
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1334 TGATAGAGCTCTTAAGTATATTCACGATGTGCGCCAGATTTACAATGTTGGAAAAGAATT 1393
Query 1117 GTCTTCCAGCTTGAAAATCAGACAAGCCATCTGTCATGTTCACCTTGAAGAAATGGAGCA 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GTCTTCCAGCTTGAAAATCAGACAAGCCATCTGTCATGTTCACCTTGAAGAAATGGAGCA 1453
Query 1177 GGCAGAGAGTGTGTTAAGTATTCTACCACAGGAGGCTGTATCTGAACATCCAGAGCTCAT 1236
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 GGCAGAGAGCGTGTTAAGCATTCTACCACAGGAGGCTGTATCTGAACATCCAGAGCTCAT 1513
Query 1237 TACCAATTTGGCTGATGAGCTAACAAACATTGGGAATTTCCACTCTGCTCTCAAATACTA 1296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 CACCAATTTGGCTGATGAGCTAACAAACATTGGGAATTTCCACTCTGCTCTCAAATACTA 1573
Query 1297 TTTAGAAGCAATCAGTGAACCTGTGAATAATGGCTATTTGTTTGTGAAAATTGCTCGCTG 1356
| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 1574 TATAGAAGCAATCAGTGAACCTGTG---AATGGCAATTTGTTTGTAAAAATTGCTCGCTG 1630
Query 1357 TTATATGTCATTGGCAGAACGAGAACAGGCCATTGTTTTCTATTATAAAGCTCTGAATGA 1416
|||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1631 TTATATGTCATTGGAAGAAAGAAAACAGGCCATTGTTTTCTATTATAAAGCTCTGAATGA 1690
Query 1417 ACTCAGTGATACGGTTGATATTCGCATAACTCTGGCTTCACTCCTCCTTGAAGATGGCAA 1476
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1691 ACTCAGTGATACGGTTGATGTTCGCATAACTCTGGCTTCACTCCTCCTGGAAGATGGCAA 1750
Query 1477 ACGAGATGAAGCTGTATTAGTGCTTTCTCCTCCGGAAAATCCAGATCCTGATACTGCTAA 1536
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1751 ACGAGATGAAGCTGTATTAGTGCTTTCTCCTCCGGAAAATCCAGATCCTGATACGGCTAA 1810
Query 1537 ACTGAAGGCATGGTGGAAAAACAGAAAGATCAGGATGAATCTTTGTCAGATCTATCATTC 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 ACTGAAGGCATGGTGGAAAAACAGAAAGATCAGGATGAATCTTTGTCAGATCTATCATTC 1870
Query 1597 AGAGGGAATGCTTGAGGACTTCGCCAATACAGCACTGCAGTTGGTACTTAAGTGGGTTTG 1656
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 AGAGGGAATGCTGGAGGACTTCGCCAATACAGCACTGCAGTTGGTACTTAAGTGGGTTTG 1930
Query 1657 GCGGCGGACGGTCAAGGGGAAAAGAAAACGACTGGTTCTTTCAGAGCATCAAAGAAACAA 1716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1931 GCGGCGGACGGTCAAGGGGAAAAGAAAACGACTGGTTCTTTCAGAGCATCAAAGAAACAA 1990
Query 1717 AAAACGCCGACGTCCTAGAGATGCTCAAGCTTCCCAGTTGAGAGGCGGACCAAAAAAGTG 1776
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1991 AAAACGCCGACGTCCTAGAGATGCTCAAGCTTCCCAGTTGAGAGGGGGACCAAAAAAGTG 2050
Query 1777 GCGCAAAATCAGGGCAACATTAAATGAAACAAGAAGAATTAGAGAACGAGCTGCTATCAA 1836
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2051 GCGCAAAATCAGGGCAACGTTAAATGAAACAAGAAGAATTAGAGAACGAGCTGCTATTAA 2110
Query 1837 AGCTCATAACGAAGATATCTGCAGTGAATCTGAGGAAGAAGTTATCAAGGATGAAGAGTA 1896
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2111 AGCTCATAACGAAGATGTCTGCAGTGAATCTGAGGAAGAAGTTATCAAGGATGAAGAGTA 2170
Query 1897 TCACCGTCTCTTTGTGGATTTGTGCAAGGCATTGGCATCCCTGCAGAGATATTGGGAAGC 1956
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2171 TCACCGTCTCTTTGTGGATTTGTGCAAGGCATTGGCATCCCTACAGAGATATTGGGAAGC 2230
Query 1957 TCTGGAGATAGTTAATTTGGCTCGGAGATTGGATGCTAAAATGCTGCCTGTTGAGACAAA 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2231 TCTGGAGATAGTTAATTTGGCTCGGAGATTGGATGCTAAAATGCTGCCTGTTGAGACAAA 2290
Query 2017 AAAGGAGCTTCAGTCACTTGGAGCTAAAATATCGTGCGATACTATGGATCCAAAGCAGTG 2076
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2291 AAAGGAGCTTCAGTCACTTGGAGCTAAAATATCTTGCGATACTATGGATCCAAAGCAGTG 2350
Query 2077 GTTTGACTGTGTAAGATCTGTCATTCAGCAACATCCATATCGTTTGAATGCCTGGAACTG 2136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2351 GTTTGACTGTGTAAGATCTGTCATTCAGCAACATCCATATCGTTTGAATGCCTGGAACTG 2410
Query 2137 CTATTACAGAGTCATTTCAAGACTAGGGAAAAGAGCATCGACTGAAGCTAAGTTCATGCA 2196
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2411 CTATTACAGTGTCATTTCGAGACTAGGGAAAAGAGCATCGACTGAAGCTAAGTTCATGCA 2470
Query 2197 TCACTTAAGGAGCAAGTACCGAGATTGCGTACCGCCCATTCTAATTGCTGGTCATCACTT 2256
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2471 TCACTTAAGGAGCAAGTACCGAGATTGCGTACCCCCCATTCTTATTGCTGGTCATCACTT 2530
Query 2257 TACCGTGACAAGCCGACATCAAGATGCTGCAAGAGAATACCTTGAAGCATATAAATTAAT 2316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2531 CACCGTGACAAGCCGACATCAAGATGCTGCAAGAGAATACCTTGAAGCATATAAATTAAT 2590
Query 2317 GCCTGATAGTCCTTTAATTAACCTGTGTGTGGGAGCTGCTTTAATCAACTTAGCCCTCGG 2376
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2591 GCCTGAGAGTCCTTTAATTAACCTGTGTGTGGGAGCTGCGTTAATCAACTTAGCCCTCGG 2650
Query 2377 TTTTCGACTCAAAAACCGACATGAGTGTCTTGCTCAAGGCTTTGCATTTCTGTACAACAA 2436
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2651 TTTTCGACTCAAAAACAGACACGAGTGTCTTGCTCAAGGCTTTGCATTTCTGTACAACAA 2710
Query 2437 TCTCAGAATTTGCAGTGACAGTCAGGAGGCGTTGTATAACGTTGCTCGAGCGTATCAGCA 2496
|||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 2711 TCTCAGAATTTGCAGTAACAGTCAGGAGGCGTTATACAACGTTGCTCGAGCGTATCAGCA 2770
Query 2497 TGTGGGACTAGTGACTCTTGCAGCTTCATACTACGAGAAGGTTTTAGCGATTTACGAGAA 2556
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2771 TGTAGGACTAGTGACTCTTGCAGCTTCATACTACGAGAAGGTGTTAGCGATTTACGAGAA 2830
Query 2557 AGAATAC-CTGATGCCGAAACTCCCTAACGAGGATCCGAATGTTGCAGAAGAGCGGAAGC 2615
||| ||| | |||||||||||| |||||||||||||||| |||||| |||||||||||||
Sbjct 2831 AGATTACAC-GATGCCGAAACTTCCTAACGAGGATCCGATTGTTGCGGAAGAGCGGAAGC 2889
Query 2616 CTGTGAATTGTGATCTCCGCAAAGAAGCTGCACACAATCTGCATTTGATCTATAAGCACA 2675
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2890 CTGTGAACTGTGACCTACGCAAAGAAGCTGCACACAATCTGCATTTGATCTATAAGCACA 2949
Query 2676 GTGGAGCAGTT-GATCTCGCGAGGCAAGTCTTAAAGGATCACTGCAGTTTCTGAGTCTCC 2734
||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 2950 GTGGAGC-GTTTGATCTCGCGAGGCAAGTATTAAAGGATCACTGCACTTTCTGAGTCTCG 3008
Query 2735 TTATCATTGTCGttttttttttAAACGAAGATAAAACACTAGGAAACCAC-CCTATTTTA 2793
| ||||||||| || |||||| ||||||||||||||||||||| ||| || | ||||
Sbjct 3009 TAATCATTGTCCTTGTTTTTTCAAACGAAGATAAAACACTAGGGAACTGTTCC-AGTTTA 3067
Query 2794 TATGTTCCAAACAAAGTTTGTTTTTCATGCATTTATTTAGTTTTCTCACAAAACTTGATC 2853
| | |||||||||||||||||||||||| | |||||||||||||||| |||||||
Sbjct 3068 TTTAAAGGGAACAAAGTTTGTTTTTCATGCATT-ACTTAGTTTTCTCACAAATCTTGATC 3126
Query 2854 TGGATATTGC 2863
|| |||||||
Sbjct 3127 TGTATATTGC 3136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142273450348
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5