BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471979
Length=2487
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17690.1 | Symbols: NOF1 | FUNCTIONS IN: molecular_function ... 3544 0.0
> AT1G17690.1 | Symbols: NOF1 | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED
IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive
organ expansion factor, predicted (InterPro:IPR010678); Has
25006 Blast hits to 13379 proteins in 904 species: Archae
- 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants
- 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI
BLink). | chr1:6082755-6088340 REVERSE LENGTH=2571
Length=2571
Score = 3544 bits (1919), Expect = 0.0
Identities = 2259/2415 (94%), Gaps = 55/2415 (2%)
Strand=Plus/Plus
Query 89 CAA-GCTCAACATCTCCCATAATCTCTTTCTCTGCACCACTTAGCTTCCAC-AAGATGGA 146
||| ||||||||||||| ||||||||||||||||||||| ||| ||||| | |||||||
Sbjct 130 CAAGGCTCAACATCTCCTATAATCTCTTTCTCTGCACCAGTTAACTTCC-CTAAGATGGC 188
Query 147 TCCAAACGCTGCTGGAGTCATGAAGAGACACAGGTCACATGAGAAATTCGATAAGAAAAG 206
|||||||||| |||||||| ||||||| |||||||| ||||||||||||||||||||| |
Sbjct 189 TCCAAACGCTACTGGAGTCTTGAAGAGGCACAGGTCCCATGAGAAATTCGATAAGAAACG 248
Query 207 GGATACGAAGAAGCACAAACATGTTGAAAAGGCTG-TTGTTTCCAATCCTTCAATAGAGG 265
|||||||||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct 249 AGATACGAAGAAGCACAAACATGTTGAAAAGAC-GATTGTTTCCAATCCTTC-----A-- 300
Query 266 ATCCAGATTCACCTGAAGAAGACACCATTGAGACTGAATCGGAAGCAATGCTTTTCAGAG 325
| ||||||||||||||||| | | || ||| ||||||||||||||||| ||| |||||
Sbjct 301 A--CAGATTCACCTGAAGAATCCTCTATAGAGGCTGAATCGGAAGCAATGGTTTACAGAG 358
Query 326 AACCGACACAGTACCAACATTTGCTGGCT-TCTCTTGGTTCATCTAACAAGGTTGTTGCT 384
||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 359 AACCGACACAGTACCAAAATTTGCTGG-TGTCTCTTGGTTCATCTAACAAGGTTGTTGCT 417
Query 385 GATATGAACAAAAGAAGGCAGAGAGAGGAGGAAGGTAAAAGTGACAC-----------A- 432
||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 418 GATATGAACAAAAGAAGGCAGAGAGAGGAAGAAGGTAAAAGTGACACAGAAGAAGATGAG 477
Query 433 GA--A-GAAGATGAGGATGAGGAGGAAAACAGTGGGTCTGAGGATTTAAGCTCTATTGAT 489
|| | ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 478 GACGATGAAGATGAGGATGAGGAGGAAAACAGTGGGTCTGACGATTTAAGCTCTACTGAT 537
Query 490 GGGGAGGATGATAAGATTCAAGGGGATGATCAGGAAACTCTCAGAGGTCTTA-TGATG-- 546
|||||||||||||||| ||||||||||||||||||||||||| ||||||||| || |
Sbjct 538 GGGGAGGATGATAAGAGTCAAGGGGATGATCAGGAAACTCTCGGAGGTCTTACGGACGAC 597
Query 547 --G-A--AA-ACAATGATAATCAAAGTGAAGAAGAAGATCCTGACGACTATGAAACGGAT 600
| | || ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 598 ACGCAGGAAGACAATGATAATCAGAGTGAGGAAGAAGATCCTGACGACTATGAAACGGAT 657
Query 601 GAGGA---GCATGACTTGAGTACCAATGGCCAATCCTTTGTAGATGCTTCTTCATCTGTT 657
||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 GAGGAGGTGCATGAGTTGAGTACCAATGGCCAATCCTTTGTAGATGCTTCTTCATCTATT 717
Query 658 AGTGCATTTAGTGAGCACCTTAGCCACAAATTATCCAGTGAAGAAGT-GAACACTTTACC 716
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 718 AGTGCATTTAGTGAGCACCTTAGCCACAAATTATCCAGTGAAGAAGTGGAA-ACTTTACC 776
Query 717 AAAAGGCAAGTGGAAATTTAAATGGGAATCACCTGCCTTTGACATGCCAAATTGCAGATG 776
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 777 AAAAGGCAAGTGGAAGTTTAAATGGGAATCACCTGCCTTTGACATGCCAAATTGCAAATG 836
Query 777 GAAAGGAACGAGTGAAAATTTTCTTGATGGTATTCAGAGTGATGCAACTTACGGCCTCAA 836
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 837 GAAAGGAACGAGTGAAAATTTTCTTGATGGTATTCAGAGTGATGCACCTTACGGCCTCAA 896
Query 837 GCCTAAGTTATATAAGCACTGGCTTCAATTATACAAAAAATCTGGAGGCAAAGATTTGGA 896
||| ||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 897 GCCGAAGTTATATAATCACTGGCTGCAATTGTACAAAAAATGTGGAGGCAAAGATTTGGA 956
Query 897 CTCATCTAAAAGGAGAAAATTCTTCTCCATTTGCAACAACTATCTGGATATATTGCATTC 956
||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 957 CTCATCTAAGAGGAGAAAATTCTTCTCTATTTGCAACAGCTATCTGGATATATTGCATTC 1016
Query 957 TAACAAGAAACCCTTTTACCATAGTGGCTCTGACGAAGACTCAAGTGCCATGGATGCGTA 1016
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1017 TAACAAGAAACCCTTTTACCATTGTGGCTCTGACGAAGACTCAAGTGCCATGGATGCGTA 1076
Query 1017 CCTTATGCATTCTTTGAATCACATCTTTAAAACTAGAGATCTTGTGAAGAAGAATGAAAG 1076
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 CCTTATGCATTCTTTGAATCACATCTTTAAAACTAGAGATCTAGTGAAGAAGAATGAAAG 1136
Query 1077 TAAAATTGCCAAGCATCGAGAGACCTCTGAAGAGGAAATTCTCTCTGATGATGGATTTCT 1136
|||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1137 TAAAATCGCCAAGCATCGAGAGACCTCCGAAGAAGAAATTCTTTCTGATGATGGATTTCT 1196
Query 1137 GGACCAAGGATTTACTCGTCCAAAGGTACTGATTCTATTACCGTTGAGGAGCATTGCCTT 1196
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1197 GGACCAAGGATTTACTCGTCCAAAGGTCCTGATTCTATTACCATTGAGGAGCATTGCCTT 1256
Query 1197 TCGCGTTGTTAAGAGGCTCATCCAACTAACTCCGGAATCTCAAAGGGTTAGTGTAGAACA 1256
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1257 TCGCGTTGTTAAGAGGCTCATACAACTAACTCCGGAATCTCAAAGGGTTAATGTAGAACA 1316
Query 1257 CCTTGACCGGTTTAACGATGAGTTTGGATGTGAAGAGGCTACTGATGACGGTGAT-GTGG 1315
||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| || |
Sbjct 1317 CCTTGACCGGTTTAATGATGAGTTTGGATGTGAAGAGGATACTGATGACTGTGATGGT-G 1375
Query 1316 AAAAGAATACATCAAAAAATGGAAACTCAACCACACAGAAGTCTTCAAAACCTTCTGATT 1375
|||||| |||||| |||||||||||||||| || ||| |||||||||||||||||||| |
Sbjct 1376 AAAAGACTACATCGAAAAATGGAAACTCAATCAAACAAAAGTCTTCAAAACCTTCTGACT 1435
Query 1376 GGCAATCCCTCTTTGGTGCGAGTAACAACGATGATGAGTTCATGCTAGGCATTAAGCATA 1435
||||| |||| |||||||||| |||||||||||||||||| ||| |||||||||| ||||
Sbjct 1436 GGCAAGCCCTTTTTGGTGCGAATAACAACGATGATGAGTTTATGTTAGGCATTAAACATA 1495
Query 1436 CAAGGAAGAGCATTAGGCTGTATGGTGATTTTTATTCCTCAGACATTATAATTGCTTCCC 1495
|||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1496 CAAGGAAGAGTATTAGGCTATATGGTGATTTTTATTCCTCAGACATTATAGTTGCTTCCC 1555
Query 1496 CTCTCAAGTTACAAATGGCCATTGGT-CAAGCAGAAGAAAACAAGGAACGGGATGTTGAT 1554
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1556 CTCTCAAGTTACATATGGCCATTGGTGC-AGCAGAAGAAAACAAGGAACGGGATGTTGAT 1614
Query 1555 TATCTTTCCTCCATAGAGGTTTTGGTTATCGATCATGCAGACATAATATCTATGCAGAAT 1614
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 TATCTTTCTTCCATAGAGGTTTTGGTTATCGATCATGCAGACATAATATCTATGCAGAAT 1674
Query 1615 TGGTCATTCCTTGCTACAGTCGTTGATC-ACTTAAATAGATTGCCATCAAAACAACATGG 1673
||||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 1675 TGGTCGTTCCTTGCTACAGTCGTTGA-CTACTTAAATAGATTGCCAACAAAACAACATGG 1733
Query 1674 AACCAATGTCATGCGAATTCGGCCGTTGTATCTGGATGGACATGCAAGGTTTTATCGCCA 1733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1734 AACCAATGTCATGCGAATTCGGCCGTTGTATCTGGATGGACATGCAAGGTTTTATCGCCA 1793
Query 1734 GTCAATAATTCTAAGTTCTTATTTAACCCCAGAGATGAATTCTCTATTCAATCGCCACTG 1793
||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||
Sbjct 1794 GTCAATAATTCTAAGTTCTTATTTAACTCCGGAGATGAATTCTCTATTCGGTCGCCACTG 1853
Query 1794 CTTGAACTATAAAGGAAAGATGAAGCTGGCGTGTGAATACAAGGGTGTTCTTGAGAAAGT 1853
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1854 CTTGAACTATAAGGGAAAGATGAAGATGGCGTGTGAATACAAGGGTGTTCTTGAGAAAGT 1913
Query 1854 GTTGCTCCCTGTCCGTCAGATTTATGAAAGATTTGATGCAGACTCCATAACCCAAGTGGA 1913
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1914 GTTGCTCCCTGTCCGTCAGATTTATGAAAGATTTGATGCAGCCTCCATAACCCAAGTGGA 1973
Query 1914 CGATGCACGTCTTGAATATTTTACCAAAAAGATTTTCCCAAAGATTAGAGATTCTGTTCA 1973
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1974 CGATGCACGTCTTGAATATTTTACCAAAAAGATTTTCCCAAAGATTAAAGATTCTGTTCA 2033
Query 1974 GGGAGGAGTAATGATCTTTATCCATTCTTACTTCGAGTTCGTCAGGCTTAGAAACTTTTT 2033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 GGGAGGAGTAATGATCTTTATCCATTCTTACTTCGAGTTCGTCAGGCTTAGAAACTTTTT 2093
Query 2034 AAATACGCAGAATACCTCTTTCTGTCTTCTTGGAGATTATGCAAAAAATGCTGATATATC 2093
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2094 GAATACGCAGAATACCTCTTTCTGTCTTCTTGGAGATTATGCAAAAAATGCAGATATATC 2153
Query 2094 CCGAGCAAGAGAACGGTTTTTTGTAGGGAGCCGAAAGATCATGCTTTACACTGAGAGAGC 2153
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 CCGAGCAAGAGAACAGTTTTTTGTAGGGAGCCGAAAGATCATGCTTTACACTGAGAGAGC 2213
Query 2154 ATACTTTTATAAGAGATACAAGATCCGTGGTATAAAGAACTTAATCTTCTATTCTCTTCC 2213
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2214 ATACTTTTATAAGAGATACAAGATCCGTGGTATAAAGAACTTAATCTTATATTCTCTTCC 2273
Query 2214 GGAGCGGAAGGAGTTTTACCCTGAGATAATGAACATGCTTGAAGAAGGATCACATGAGAT 2273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2274 GGAGCGGAAGGAGTTTTACCCTGAGATAATGAACATGCTTGAAGAAGGATCACATGACAT 2333
Query 2274 GATGTCCACTGCACTTTTTTCTCGTTTTGATATGCTCCAGCTGGAAAGGATCGTTGGCTC 2333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 GATGTCCACTGCACTTTTTTCTCGTTTTGATATGCTCCAGCTGGAAAGGATCGTTGGCTC 2393
Query 2334 TACTTCCGCAACGAGAATGATCAGTTCTGAGAAGAACATGTTTGCTTTTTGTTAAGAAAC 2393
||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 2394 TACTTCCGCAAAGAGAATGATCACTTCTGAGAAGAACATGTTTGCTTTCTGTTAAGAAAC 2453
Query 2394 TAAATAGTT--TAGTCTATCTATTTTGGTGATCTTAATCGCCCAGTTTTGATTCTACCAT 2451
||||||| || ||||| | ||| ||||||||| ||||||||||||||||| | | ||
Sbjct 2454 AAAATAGTCGATA-TCTATTTGTTT-GGTGATCTTGATCGCCCAGTTTTGATTATGCTAT 2511
Query 2452 TTTCAGAGTTCAGAC 2466
|||| ||||||||
Sbjct 2512 TTTCTTTGTTCAGAC 2526
Score = 132 bits (71), Expect = 2e-29
Identities = 83/88 (94%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 1 GGGTTTTAATCTGCTCGGCCGCCGCTTTA-TTTTCAGACCAAACCTATGAACTTCGTTTT 59
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 9 GGGTTTTAATCTGCTCGGCCGCCGCTTTATTTTTCAGACCAAACCTACGAACTTCGTTTT 68
Query 60 GAGGCAGtttttt-t-ACAACTAAAATC 85
||||||||||||| | ||| ||||||||
Sbjct 69 GAGGCAGTTTTTTCTGACAGCTAAAATC 96
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123410679780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5